assert (uvdata.header.date_obs == '2003-02-25')
sutable = uvdata.table('SU', 1)
assert (sutable.version == 1)
assert (sutable[0].epoch == 2000.0)
antable = uvdata.table('AN', 0)
assert (antable.version == 1)
stabxyz = antable[3].stabxyz
assert (3822846 < stabxyz[0] < 3822847)
cltable = uvdata.table('CL', 0)
start = cltable[0].time
nxtable = uvdata.table('NX', 0)
for row in nxtable:
assert (row.time >= start)
for row in nxtable:
assert (sutable[row.source_id - 1].id__no == row.source_id)
start2 = cltable[0]['time']
assert (start2 == start)
assert (uvdata.table_highver('NX') == 1)
uvdata.table('NX', 0).zap()
assert (uvdata.table_highver('NX') == 0)
uvdata.clrstat()
finally:
uvdata.zap()
print 'clean: Removal all AIPS catalog entries'
print 'usage: doImage clean.py <aipsNumber>'
print 'where <aipsNumber> Your *PIPELINE* AIPS number (should always be the same)'
print ''
quit()
AIPS.userno = int(sys.argv[1]) # retrieve AIPS pipeline user number
mydisk = 2 # choose a good default work disk
baddisk = 1 # list a disk to avoid (0==no avoidance)
catalog = AIPSCat()[mydisk]
catalog_size = len(catalog)
print 'catalog_size', catalog_size
for xx in range(catalog_size):
aname = AIPSCat()[mydisk][xx].name
aclass = AIPSCat()[mydisk][xx].klass
aseq = AIPSCat()[mydisk][xx].seq
spectra = AIPSUVData(aname, aclass, mydisk, aseq)
image = AIPSImage(aname, aclass, mydisk, aseq)
if spectra.exists():
spectra.clrstat()
elif image.exists():
image.clrstat()
AIPSCat().zap() # empty the catalog
def __init__(self, iterNum, **args):
self.iterNum = iterNum
self.args = args
AIPS.userno=self.args["user"]#username
snInit = 0
clInit = 1
AIPSTask.msgkill = -5 #makes the output less verbose
uvdata = AIPSUVData(self.args["name"], 'UVDATA', 1, self.args["inseq"])
cleaninseq = iterNum
imageClean = AIPSImage(self.args["name"], 'ICL001', 1, cleaninseq)
imageDirty = AIPSImage(self.args["name"], 'IBM001', 1, cleaninseq)
imageCleanSC = AIPSImage(self.args["source"], 'ICL001', 1, 1)
imageDirtySC = AIPSImage(self.args["source"], 'IBM001', 1, 1)
flag = AIPSUVData(self.args["name"], 'TASAV', 1, 100)
if uvdata.exists() and iterNum == 1:
print("Data is already present")
ans1 = raw_input('\033[33mDo you want to zap the data (yes/no)? \033[0m').upper()
if ans1 == 'YES':
print("Zapping data and reloading.")
uvdata.clrstat()
uvdata.zap()
fitld = AIPSTask('fitld')
fitld.datain = self.args["dataPath"]
fitld.outname = self.args["name"]
fitld.outseq = self.args["inseq"]
fitld.ncount = self.args["fileCount"]
fitld.doconcat = 1
#fitldFL = AIPSTask("FITLD")
#fitldFL.datain = args["flagPath"]
#fitldFL.outname = self.args["name"]
#fitldFL.outseq = 100
#fitldFL.ncount = 1
#fitldFL.go()
snVers = 0
clVers = 1
fitld.go()
else:
ans2 = raw_input('\033[33mDo you want to zap the tables and images(yes/no)? \033[0m').upper()
if ans2 == 'YES':
print("Zapping tables/images.")
uvdata.clrstat()
uvdata.zap_table('SN', -1)
uvdata.zap_table('FL', -1)
tablesToDelete = 0
for i in uvdata.tables:
if i[1] == 'AIPS CL' and i[0]>tablesToDelete:
tablesToDelete = i[0]
for k in range(tablesToDelete,1,-1):
uvdata.zap_table('CL', k)
snVers = 0
clVers = 1
else:
print("Going direclty to imaging.")
"""
snVers = 0
clVers = 0
for i in uvdata.tables:
if i[1] == 'AIPS SN' and i[0] > snVers:
snVers = i[0]
if i[1] == 'AIPS CL' and i[0] > clVers:
clVers = i[0]
"""
clVers = int(raw_input("What cl table would you like to use? "))
loc = location_finder.Location_finder(clVers, **self.args)
sys.exit()
elif not uvdata.exists():
print("Loading data")
fitld = AIPSTask('fitld')
fitld.datain = self.args["dataPath"]
fitld.outname = self.args["name"]
fitld.outseq = self.args["inseq"]
fitld.ncount = self.args["fileCount"]
fitld.doconcat = 1
fitld.go()
#fitldFL = AIPSTask("FITLD")
#fitldFL.datain = args["flagPath"]
#fitldFL.outname = self.args["name"]
#fitldFL.outseq = 100
#fitldFL.ncount = 1
#fitldFL.go()
snVers = 0
clVers = 1
else:
snVers = 0
clVers = 0
for i in uvdata.tables:
if i[1] == 'AIPS SN' and i[0] > snVers:
snVers = i[0]
if i[1] == 'AIPS CL' and i[0] > clVers:
clVers = i[0]
print("Deleting tables.")
uvdata.zap_table('SN', -1)
for k in range(clVers,1,-1):
uvdata.zap_table('CL', k)
snVers = 0
clVers = 1
if imageClean.exists():
imageClean.clrstat()
imageClean.zap()
if imageDirty.exists():
imageDirty.clrstat()
imageDirty.zap()
if flag.exists():
flag.clrstat()
flag.zap()
fitldFL = AIPSTask("FITLD")
fitldFL.datain = args["flagPath"]
fitldFL.outname = self.args["name"]
fitldFL.outseq = 100
fitldFL.ncount = 1
fitldFL.go()
print("Copying flagging")
tacop = AIPSTask("TACOP")
tacop.indata = flag
tacop.invers = 3
tacop.ncount = 1
tacop.outname = self.args["name"]
tacop.outseq = self.args["inseq"]
tacop.outclass = 'UVDATA'
tacop.outdisk = 1
tacop.outver = 0
tacop.inext = 'FG'
tacop.go()
if self.args["doBP"]:
uvdata.zap_table('BP', -1) #create a new bp table for each reftelly
print("Running bandpass")
bpass = AIPSTask('BPASS')
bpass.indata = uvdata
bpass.calsour[1] = self.args["bandPassCal"]
bpass.timer = self.args["time"]
bpass.refant = self.args["refTelly"]
if self.args["excludeTelly"]:
bpass.antennas[1:] = self.args["excludedTellys"]
bpass.go()
"""
uvdata.zap_table('TY', -1)
uvdata.zap_table('GC', -1)
print("Running antab")
antab = AIPSTask('ANTAB')
antab.indata = uvdata
antab.calin = self.args["antPath"]
antab.go()
print("Running apcal")
apcal = AIPSTask('APCAL')
apcal.indata = uvdata
apcal.timer = self.args["time"]
apcal.tyver = 1
apcal.gcver = 1
apcal.go()
snVers = snVers + 1
print("apcal made snVers {0}".format(snVers))
#applies new SN table to CL
print("Running clcal.")
clcal = AIPSTask('clcal')
clcal.indata = uvdata
clcal.calsour[1] = self.args["cal"]
clcal.timerang = self.args["time"]
clcal.snver = snVers
clcal.inver = snVers
clcal.gainver = clInit #apply to original cl
clcal.timer = self.args["time"]
clcal.interpol = "ambg"
clcal.opcode = "calp"
clcal.refant = self.args["refTelly"]
clcal.go()
clVers = clVers + 1
print("clcal made cl table {0}".format(clVers))
"""
print("Running Fring.")
fring = AIPSTask('fring') #finds fringes
fring.indata = uvdata
fring.docalib = 1
fring.gainuse = clVers
if self.args["excludeTelly"]:
fring.antennas[1:] = self.args["excludedTellys"]
fring.calsour[1] = self.args["cal"]
fring.bchan = self.args["bchan"]
fring.echan = self.args["echan"]
fring.timer = self.args["time"]
fring.refant = self.args["refTelly"]
if self.args["doBP"]:
fring.doband = 1
fring.bpver = 1
fring.go()
snVers = snVers + 1
SN = 0
for i in uvdata.tables:
if i[1] == 'AIPS SN' and i[0]>SN:
SN = i[0]
if not SN == snVers:
sys.exit("SN table number missmatch")
print("Fring created SN table {0}".\
format(snVers))
#applies new SN table to CL
print("Running clcal.")
clcal = AIPSTask('clcal')
clcal.indata = uvdata
clcal.calsour[1] = self.args["cal"]
clcal.timerang = self.args["time"]
if self.args["excludeTelly"]:
clcal.antennas[1:] = self.args["excludedTellys"]
clcal.snver = snVers
clcal.inver = snVers
clcal.gainver = clInit #apply to original cl
clcal.timer = self.args["time"]
clcal.interpol = "ambg"
clcal.opcode = "calp"
clcal.refant = self.args["refTelly"]
clcal.go()
"""
clcal.snver = snVers
clcal.inver = snVers
clcal.gainver = clVers
clcal.go()
"""
CL = 0
clVers = clVers + 1
clFring = clVers
for i in uvdata.tables:
if i[1] == 'AIPS CL' and i[0]>CL:
CL = i[0]
if not CL == clVers:
sys.exit("CL table number missmatch")
print("Clcal created CL table {0}".\
format(clVers))
#determines calibration, creates new SN
print("Running calib")
calib = AIPSTask('calib')
calib.indata = uvdata
calib.calsour[1] = self.args["cal"]
calib.docalib = 1
calib.gainuse = clVers
if self.args["excludeTelly"]:
calib.antennas[1:] = self.args["excludedTellys"]
calib.smodel[1] = 1
calib.solint = 0.2
calib.soltype = 'L1'
calib.solmode = 'P'
if self.args["doBP"]:
calib.doband = 1
calib.bpver = 1
calib.timer = self.args["time"]
calib.refant = self.args["refTelly"]
calib.go()
snVers = snVers + 1
SN = 0
for i in uvdata.tables:
if i[1] == 'AIPS SN' and i[0]>SN:
SN = i[0]
if not SN == snVers:
sys.exit("SN table number missmatch")
print("Calib created SN table {0}".\
format(snVers))
#takes SN table created by calib and applies to CL
print("Running clcal")
clcal.sources[1] = self.args["cal"]
clcal.snver = snVers
clcal.inver = snVers
clcal.gainver = clVers
clcal.go() #Apply only to cal
clVers = clVers + 1
CL = 0
for i in uvdata.tables:
if i[1] == 'AIPS CL' and i[0]>CL:
CL = i[0]
if not CL == clVers:
sys.exit("CL table number missmatch")
print("Clcal created CL table {0}".format(clVers))
#cleans the image
print("Running imagr")
imagr = AIPSTask('IMAGR')
imagr.indata = uvdata
imagr.sources[1] = self.args["cal"]
imagr.timerang = self.args["time"]
imagr.docalib = 1
imagr.outseq = iterNum #test to force it to make file
imagr.gainuse = clVers
imagr.bchan = self.args["bchan"]
imagr.echan = self.args["echan"]
imagr.nchav = (self.args["echan"]-self.args["bchan"] + 1)
if self.args["doBP"]:
imagr.doband = 1
imagr.bpver = 1
if self.args["excludeTelly"]:
imagr.antennas[1:] = self.args["excludedTellys"]
imagr.cellsize = AIPSList([0.0001,0.0001])
imagr.imsize = AIPSList([256,256])
imagr.nboxes = len(self.args["CalCleanBox"])
imagr.clbox[1:] = self.args["CalCleanBox"]
imagr.niter = 1000
imagr.go()
print("Done with imagr")
#to get last positive row
latestImgTable = 0
for j in imageClean.tables:
if j[1] == 'AIPS CC' and j[0]>latestImgTable:
latestImgTable = j[0]
ccTable = imageClean.table('CC', latestImgTable)
for row, i in enumerate(ccTable, start=2): #start @ 2 to get last positive
if i['flux']<0:
lastPositive = row
break
print("The last positive component number is: {0}".\
format(lastPositive))
print("Running Calib")
calibSelf = AIPSTask('calib')
calibSelf.in2data = imageClean
calibSelf.indata = uvdata
calibSelf.calsour[1] = self.args["cal"]
calibSelf.docalib = 1
calibSelf.gainuse = clFring
calibSelf.solint = 0.2
calibSelf.soltype = 'L1'
calibSelf.solmode = 'A&P'
if self.args["excludeTelly"]:
calibSelf.antennas[1:] = self.args["excludedTellys"]
calibSelf.ncomp[1] = lastPositive
calibSelf.timer = self.args["time"]
if self.args["doBP"]:
calibSelf.doband = 1
calibSelf.bpver = 1
calibSelf.go()
snVers = snVers + 1
SN = 0
for i in uvdata.tables:
if i[1] == 'AIPS SN' and i[0]>SN:
SN = i[0]
if not SN == snVers:
print("SN = {0} , snVers = {1}".format(SN, snVers))
sys.exit("SN table number missmatch")
print("calibSelf created SN table {0}".format(snVers))
#makes contour plot
kntr = AIPSTask('KNTR')
kntr.indata = imageClean
kntr.levs = AIPSList([-1,1,2,3,4,5,7,10])
kntr.dogrey = -1
kntr.dotv = -1
kntr.dovect = - 1
#kntr.blc[1] = .80*self.args["fitBox"][1]
#kntr.blc[2] = .80*self.args["fitBox"][2]
#kntr.trc[1] = 1.20*self.args["fitBox"][3]
#kntr.trc[2] = 1.20*self.args["fitBox"][4]
kntr.go()
lwmp = AIPSTask('LWPLA')
lwmp.indata = imageClean
lwmp.plver = 1
lwmp.invers = 1
lwmp.outfile = os.getcwd() + '/images_{0}/{1}_time{2}'.format(self.args["date"],self.args["cal"],self.iterNum) + '.ps'
lwmp.go()
print("Running clcal")
clcal.snver = snVers
clcal.inver = snVers
clcal.sources[1] = self.args["cal"]
clcal.calsour[1] = self.args["cal"]
clcal.gainver = clVers
print("clVers = {0}".format(clVers))
clcal.go() #Apply only to cal
clVers = clVers + 1
CL = 0
for i in uvdata.tables:
if i[1] == 'AIPS CL' and i[0]>CL:
CL = i[0]
if not CL == clVers:
sys.exit("CL table number missmatch")
print("clcal created CL table {0}".format(clVers))
print("Running clcal.")
clcalFinal = AIPSTask('clcal')
clcalFinal.indata = uvdata
clcalFinal.sources[1] = self.args["source"]
clcalFinal.calsour[1] = self.args["cal"]
clcalFinal.timerang = self.args["time"]
clcalFinal.snver = snVers
clcalFinal.inver = snVers
clcalFinal.gainver = clFring
if self.args["excludeTelly"]:
clcalFinal.antennas[1:] = self.args["excludedTellys"]
clcalFinal.timer = self.args["time"]
clcalFinal.refant = self.args["refTelly"]
print("clFring = {0}".format(clFring))
clcalFinal.go()
clVers = clVers +1
CL = 0
for i in uvdata.tables:
if i[1] == 'AIPS CL' and i[0]>CL:
CL = i[0]
if not CL == clVers:
sys.exit("CL table number missmatch")
print("clcalFinal created CL table {0}".format(clVers))
print("Running imagr")
imagrSC = AIPSTask('IMAGR')
imagrSC.indata = uvdata
imagrSC.sources[1] = self.args["source"]
imagrSC.timerang = self.args["time"]
imagrSC.docalib = 1
imagrSC.outseq = 1
imagrSC.outname = self.args["source"]
imagrSC.gainuse = clVers
imagrSC.bchan = self.args["SCbchan"]
imagrSC.echan = self.args["SCechan"]
imagrSC.nchav = (self.args["SCechan"]-self.args["SCbchan"] + 1)
if self.args["doBP"]:
imagrSC.doband = 1
imagrSC.bpver = 1
if self.args["excludeTelly"]:
imagrSC.antennas[1:] = self.args["excludedTellys"]
imagrSC.cellsize = AIPSList([0.0001,0.0001])
imagrSC.imsize = AIPSList([256,256])
imagrSC.nboxes = 1
imagrSC.clbox[1] = self.args["fitBox"]
imagrSC.niter = 1000
imagrSC.go()
print("Done with imagr")
#makes contour plot
kntrSC = AIPSTask('KNTR')
kntrSC.indata = imageCleanSC
kntrSC.levs = AIPSList([2,3,4,5,7,10,13,17])
kntrSC.dogrey = -1
kntrSC.dotv = -1
kntrSC.dovect = - 1
#kntr.blc[1] = .80*self.args["fitBox"][1]
#kntr.blc[2] = .80*self.args["fitBox"][2]
#kntr.trc[1] = 1.20*self.args["fitBox"][3]
#kntr.trc[2] = 1.20*self.args["fitBox"][4]
kntrSC.go()
lwmpSC = AIPSTask('LWPLA')
lwmpSC.indata = imageCleanSC
lwmpSC.plver = 1
lwmpSC.invers = 1
lwmpSC.outfile = os.getcwd() + '/images_{0}/{1}_time{2}'.format(self.args["date"],self.args["source"],self.iterNum) + '.ps'
lwmpSC.go()
loc = location_finder.Location_finder(clVers, **self.args)
imageClean.zap()
imageDirty.zap()
imageCleanSC.zap()
imageDirtySC.zap()
flag.zap()
with open(os.getcwd() + '/images_{0}/params{1}.txt'.format(self.args["date"],self.iterNum),'w') as f:
for l in self.args:
f.write("\n{0}".format(l))
print 'usage: doImage clean.py <aipsNumber>'
print 'where <aipsNumber> Your *PIPELINE* AIPS number (should always be the same)'
print ''
quit()
AIPS.userno=int(sys.argv[1]) # retrieve AIPS pipeline user number
mydisk=2 # choose a good default work disk
baddisk=1 # list a disk to avoid (0==no avoidance)
catalog = AIPSCat()[mydisk]
catalog_size = len(catalog)
print 'catalog_size',catalog_size
for xx in range(catalog_size):
aname = AIPSCat()[mydisk][xx].name
aclass = AIPSCat()[mydisk][xx].klass
aseq = AIPSCat()[mydisk][xx].seq
spectra = AIPSUVData( aname, aclass, mydisk, aseq)
image = AIPSImage( aname, aclass, mydisk, aseq)
if spectra.exists():
spectra.clrstat()
elif image.exists():
image.clrstat()
AIPSCat().zap() # empty the catalog
