def fastTanimotoSimilarity(A, nA, B):
"""Same as tanimotoSimilarity but expecting in A and B a long integer representing the binary fingetprint
and nA the number of ONbits in A"""
#Not validating input since this function has to called very often.
AandB = A & B
nAB = miscUtilities.countOnBits(AandB) # Number of match ON Bits
nAnB = 0.0 + nA + miscUtilities.countOnBits(B) # nA+nB
if not nAnB: return 0.0
else: return nAB / (nAnB - nAB)
def fastTanimotoSimilarity(A,nA,B):
"""Same as tanimotoSimilarity but expecting in A and B a long integer representing the binary fingetprint
and nA the number of ONbits in A"""
#Not validating input since this function has to called very often.
AandB = A & B
nAB = miscUtilities.countOnBits(AandB) # Number of match ON Bits
nAnB = 0.0 + nA + miscUtilities.countOnBits(B) # nA+nB
if not nAnB: return 0.0
else: return nAB / (nAnB - nAB)
def tanimotoSimilarity(A, B):
"""Calculates the tanimnoto similarity defined by:
ts = c/(a+b-c)
where a is the number of bits in A
b is the number of bits in B
c is the number of bits in common
A and B are the strings containing the bits
This returns a value between 0 and 1:
0 - Nothing in common
1 - Identical
len(A) and len(A) and len(B) are expected to be the same
"""
#Not validating input since this function has to called very often.
nAB = 0.0 + miscUtilities.countOnBits(int(A, 2) & int(B, 2))
nAnB = A.count("1") + B.count("1")
if not nAnB: return 0.0
else: return nAB / (nAnB - nAB)
def tanimotoSimilarity(A, B):
"""Calculates the tanimnoto similarity defined by:
ts = c/(a+b-c)
where a is the number of bits in A
b is the number of bits in B
c is the number of bits in common
A and B are the strings containing the bits
This returns a value between 0 and 1:
0 - Nothing in common
1 - Identical
len(A) and len(A) and len(B) are expected to be the same
"""
#Not validating input since this function has to called very often.
nAB = 0.0 + miscUtilities.countOnBits(int(A,2) & int(B,2))
nAnB = A.count("1") + B.count("1")
if not nAnB: return 0.0
else: return nAB / (nAnB - nAB)