def RunQC(verbose= False, sample_level=False, remove_samples=False, variant_level=False, client_secrets=None, project_number=None, dataset=None, variant_table=None, expanded_table=None, poll=False): qc = GenomicsQC(verbose=verbose, client_secrets=client_secrets, project_number=project_number, dataset=dataset, variant_table=variant_table, expanded_table=expanded_table) if sample_level is True: qc.sample_qc(remove=remove_samples) if variant_level is True: qc.variant_qc(poll)
def RunQC(verbose=False, sample_id=None, sample_file=None, variant_file=None, client_secrets=None, project_number=None, dataset=None, variant_table=None, expanded_table=None): qc = GenomicsQC(verbose=verbose, client_secrets=client_secrets, project_number=project_number, dataset=dataset, variant_table=variant_table, expanded_table=expanded_table) if sample_id is not None: qc.remove_sample(sample_id) if sample_file is not None: qc.remove_samples_from_file(sample_file) if variant_file is not None: qc.remove_positions_from_file(variant_file)
def RunQC(verbose=False, sample_level=False, remove_samples=False, variant_level=False, client_secrets=None, project_number=None, dataset=None, variant_table=None, expanded_table=None, poll=False, qc_step=None): qc = GenomicsQC(verbose=verbose, client_secrets=client_secrets, project_number=project_number, dataset=dataset, variant_table=variant_table, expanded_table=expanded_table) if sample_level is True: qc.sample_qc(remove=remove_samples) if variant_level is True: qc.variant_qc(poll) if qc_step is not None: qc.custom_list(qc_step)
def RunQC(verbose= False, sample_id=None, sample_file=None, variant_file=None, client_secrets=None, project_number=None, dataset=None, variant_table=None, expanded_table=None): qc = GenomicsQC(verbose=verbose, client_secrets=client_secrets, project_number=project_number, dataset=dataset, variant_table=variant_table, expanded_table=expanded_table) if sample_id is not None: qc.remove_sample(sample_id) if sample_file is not None: qc.remove_samples_from_file(sample_file) if variant_file is not None: qc.remove_positions_from_file(variant_file)