def test_basic_isochizomers(self):
"""Test to be sure isochizomer and neoschizomers are as expected."""
self.assertEqual(Acc65I.isoschizomers(), [Asp718I, KpnI])
self.assertEqual(Acc65I.elucidate(), 'G^GTAC_C')
self.assertEqual(Asp718I.elucidate(), 'G^GTAC_C')
self.assertEqual(KpnI.elucidate(), 'G_GTAC^C')
self.assertTrue(Acc65I.is_isoschizomer(KpnI))
self.assertFalse(Acc65I.is_equischizomer(KpnI))
self.assertTrue(Acc65I.is_neoschizomer(KpnI))
self.assertIn(Acc65I, Asp718I.equischizomers())
self.assertIn(KpnI, Asp718I.neoschizomers())
self.assertIn(KpnI, Acc65I.isoschizomers())
def test_basic_isochizomers(self):
"""Test to be sure isochizomer and neoschizomers are as expected."""
self.assertEqual(Acc65I.isoschizomers(), [Asp718I, KpnI])
self.assertEqual(Acc65I.elucidate(), 'G^GTAC_C')
self.assertEqual(Asp718I.elucidate(), 'G^GTAC_C')
self.assertEqual(KpnI.elucidate(), 'G_GTAC^C')
self.assertTrue(Acc65I.is_isoschizomer(KpnI))
self.assertFalse(Acc65I.is_equischizomer(KpnI))
self.assertTrue(Acc65I.is_neoschizomer(KpnI))
self.assertIn(Acc65I, Asp718I.equischizomers())
self.assertIn(KpnI, Asp718I.neoschizomers())
self.assertIn(KpnI, Acc65I.isoschizomers())
def test_basic_isochizomers(self):
"""Test to be sure isochizomer and neoschizomers are as expected.
"""
self.assertEqual(Acc65I.isoschizomers(), [Asp718I, KpnI])
self.assertEqual(Acc65I.elucidate(), 'G^GTAC_C')
self.assertEqual(Asp718I.elucidate(), 'G^GTAC_C')
self.assertEqual(KpnI.elucidate(), 'G_GTAC^C')
def test_comparisons(self):
"""Test comparison operators between different enzymes."""
# Comparison of iso- and neoschizomers
self.assertEqual(Acc65I, Acc65I)
self.assertNotEqual(Acc65I, KpnI)
self.assertFalse(Acc65I == Asp718I)
# self.assertNotEqual(Acc65I, Asp718I) it doesn't work as expected
self.assertFalse(Acc65I != Asp718I)
self.assertNotEqual(Acc65I, EcoRI)
self.assertTrue(Acc65I >> KpnI)
self.assertFalse(Acc65I >> Asp718I)
# Compare length of recognition sites
self.assertFalse(EcoRI >= EcoRV)
self.assertTrue(EcoRV >= EcoRI)
with self.assertRaises(NotImplementedError):
EcoRV >= 3
self.assertFalse(EcoRI > EcoRV)
self.assertTrue(EcoRV > EcoRI)
with self.assertRaises(NotImplementedError):
EcoRV > 3
self.assertTrue(EcoRI <= EcoRV)
self.assertFalse(EcoRV <= EcoRI)
with self.assertRaises(NotImplementedError):
EcoRV <= 3
self.assertTrue(EcoRI < EcoRV)
self.assertFalse(EcoRV < EcoRI)
with self.assertRaises(NotImplementedError):
EcoRV < 3
# Compare compatible overhangs
self.assertTrue(Acc65I % Asp718I)
self.assertTrue(Acc65I % Acc65I)
self.assertFalse(Acc65I % KpnI)
with self.assertRaises(TypeError):
Acc65I % "KpnI"
self.assertTrue(SmaI % EcoRV)
self.assertTrue(EarI % EarI)
self.assertIn(EcoRV, SmaI.compatible_end())
self.assertIn(Acc65I, Asp718I.compatible_end())
def test_comparisons(self):
"""Test comparison operators between different enzymes."""
# Comparison of iso- and neoschizomers
self.assertEqual(Acc65I, Acc65I)
self.assertNotEqual(Acc65I, KpnI)
self.assertFalse(Acc65I == Asp718I)
self.assertFalse(Acc65I != Asp718I)
self.assertNotEqual(Acc65I, EcoRI)
self.assertTrue(Acc65I >> KpnI)
self.assertFalse(Acc65I >> Asp718I)
# Compare length of recognition sites
self.assertFalse(EcoRI >= EcoRV)
self.assertTrue(EcoRV >= EcoRI)
with self.assertRaises(NotImplementedError):
EcoRV >= 3
self.assertFalse(EcoRI > EcoRV)
self.assertTrue(EcoRV > EcoRI)
with self.assertRaises(NotImplementedError):
EcoRV > 3
self.assertTrue(EcoRI <= EcoRV)
self.assertFalse(EcoRV <= EcoRI)
with self.assertRaises(NotImplementedError):
EcoRV <= 3
self.assertTrue(EcoRI < EcoRV)
self.assertFalse(EcoRV < EcoRI)
with self.assertRaises(NotImplementedError):
EcoRV < 3
# Compare compatible overhangs
self.assertTrue(Acc65I % Asp718I)
self.assertTrue(Acc65I % Acc65I)
self.assertFalse(Acc65I % KpnI)
with self.assertRaises(TypeError):
Acc65I % 'KpnI'
self.assertTrue(SmaI % EcoRV)
self.assertTrue(EarI % EarI)
self.assertIn(EcoRV, SmaI.compatible_end())
self.assertIn(Acc65I, Asp718I.compatible_end())