def testPdbId(self):
pdbid ="1ddf"
for loc in self.res:
r = Residues("\t 1ddf \t"+loc[0]+"\t\n\n\n")
self.assertEqual(r.pdbid, pdbid)
self.assertEqual(str(r), pdbid+" "+loc[0])
r = Residues(pdbid+" "+loc[0])
self.assertEqual(r.pdbid, pdbid)
self.assertEqual(str(r), pdbid+" "+loc[0])
r = Residues("104l A:112-113")
self.assertEqual(r.pdbid, "104l")
self.assertEqual(r.fragments, (('A', '112', '113'),))
def testPdbId(self):
pdbid ="1ddf"
for loc in self.res :
r = Residues("\t 1ddf \t"+loc[0]+"\t\n\n\n")
assert r.pdbid == pdbid
assert str(r) == pdbid+" "+loc[0]
r = Residues(pdbid+" "+loc[0])
assert r.pdbid == pdbid
assert str(r) == pdbid+" "+loc[0]
r = Residues("104l A:112-113")
assert r.pdbid == "104l"
assert r.fragments == (('A', '112', '113'),)
def testAstralParse(self) :
"""Astral encloses residue subsets in brackets. Lets make sure we
can parse those too.
"""
for loc in self.res :
r = Residues("("+loc[0]+")")
assert r.fragments == loc[1], str(r.locations)
def testJustPdbId(self):
r = Residues("1sds")
self.assertEqual(r.pdbid, "1sds")
self.assertFalse(r.fragments)
def testAstralParse(self):
"""Test if we can parse residue subsets enclosed in brackets"""
for loc in self.res:
r = Residues("("+loc[0]+")")
self.assertEqual(r.fragments, loc[1])
def testStr(self):
for loc in self.res:
r = Residues(loc[0])
self.assertEqual(str(r), loc[0])
def testParse(self):
for loc in self.res:
r = Residues(loc[0])
self.assertEqual(r.fragments, loc[1])
def testParseError(self) :
try:
r = Residues("09324923423hh./;,.389")
assert 0, "Should never get here: "+str(r)
except ValueError, e :
pass
def testJustPdbId(self) :
r = Residues("1sds")
assert r.pdbid == "1sds"
assert not r.fragments
def testStr(self):
for loc in self.res :
r = Residues(loc[0])
assert str(r) == loc[0], str(r)+" is not "+loc[0]
def testParse(self):
for loc in self.res :
r = Residues(loc[0])
assert r.fragments == loc[1], str(r.locations)
