find_parser_problems.py <GenBank file to parse>
"""
# standard library
import sys
# GenBank
from Bio import GenBank
verbose = 0
if len(sys.argv) != 2:
print("Usage ./find_parser_problems <GenBank file to parse>")
sys.exit()
feature_parser = GenBank.FeatureParser(debug_level=0)
parser = GenBank.ErrorParser(feature_parser)
handle = open(sys.argv[1], 'r')
iterator = GenBank.Iterator(handle, parser, has_header=1)
while 1:
have_record = 0
while have_record == 0:
try:
cur_record = iterator.next()
have_record = 1
except GenBank.ParserFailureError as msg:
print "Parsing Problem:", msg
sys.exit()
