#!/usr/bin/env python
"""Test the Location code located in SeqFeature.py
This checks to be sure fuzzy and non-fuzzy representations of locations
are working properly.
"""
from Bio import SeqFeature
# --- test fuzzy representations
print("Testing fuzzy representations...")
# check the positions alone
exact_pos = SeqFeature.ExactPosition(5)
within_pos_s = SeqFeature.WithinPosition(10, left=10, right=13)
within_pos_e = SeqFeature.WithinPosition(13, left=10, right=13)
between_pos_e = SeqFeature.BetweenPosition(24, left=20, right=24)
before_pos = SeqFeature.BeforePosition(15)
after_pos = SeqFeature.AfterPosition(40)
print "Exact:", exact_pos
print("Within (as start, %i): %s" % (int(within_pos_s), within_pos_s))
print("Within (as end, %i): %s" % (int(within_pos_e), within_pos_e))
print("Between (as end, %i): %s" % (int(between_pos_e), between_pos_e))
print "Before:", before_pos
print "After:", after_pos
# put these into Locations
location1 = SeqFeature.FeatureLocation(exact_pos, within_pos_e)
location2 = SeqFeature.FeatureLocation(before_pos, between_pos_e)
location3 = SeqFeature.FeatureLocation(within_pos_s, after_pos)
#!/usr/bin/env python
"""Test the Location code located in SeqFeature.py
This checks to be sure fuzzy and non-fuzzy representations of locations
are working properly.
"""
from Bio import SeqFeature
# --- test fuzzy representations
print "Testing fuzzy representations..."
# check the positions alone
exact_pos = SeqFeature.ExactPosition(5)
within_pos = SeqFeature.WithinPosition(10, 3)
between_pos = SeqFeature.BetweenPosition(20, 4)
before_pos = SeqFeature.BeforePosition(15)
after_pos = SeqFeature.AfterPosition(40)
print "Exact:", exact_pos
print "Within:", within_pos
print "Between:", between_pos
print "Before:", before_pos
print "After:", after_pos
# put these into Locations
location1 = SeqFeature.FeatureLocation(exact_pos, within_pos)
location2 = SeqFeature.FeatureLocation(before_pos, between_pos)
location3 = SeqFeature.FeatureLocation(within_pos, after_pos)
for location in [location1, location2, location3]:
print "Location:", location
