def parse(self, text):
"""
Parses the given configuration. Asserts that all required keys and
no invalid keys were specified in the configuration.
:param text: configuration to parse
:type text: string or open file
"""
if not hasattr(text, 'readline'):
text = StringIO(text)
ini_parser = SafeConfigParser()
ini_parser.readfp(text)
if 'DEFAULT' in ini_parser.sections():
self.global_settings = dict(ini_parser.items('DEFAULT'))
if 'tractor' in ini_parser.sections():
found_req_keys = []
invalid_keys = []
for key, value in ini_parser.items('tractor'):
if not key in self.KEYS:
invalid_keys.append(key)
continue
if key in self.REQUIRED_KEYS:
found_req_keys.append(key)
self.settings[key] = value
#
if invalid_keys:
raise ParsingError('Found invalid keys in [tractor] '
'config section: %s' % (invalid_keys,))
diff = self.REQUIRED_KEYS.difference(found_req_keys)
if diff:
raise ParsingError('Not all required keys found in [tractor] '
'config section (found: %s, missing: %s).'
% (found_req_keys, list(diff)))
def _loadConfig(configFile):
parser = SafeConfigParser()
if (len(parser.read(configFile)) == 0):
logging.error("Configuration file not found (%s)", configFile)
exit()
bgpConfig = parser.items("BGP")
dataplaneConfig = dict()
for vpnType in ['ipvpn', 'evpn']:
try:
dataplaneConfig[vpnType] = dict(
parser.items("DATAPLANE_DRIVER_%s" % vpnType.upper()))
except NoSectionError:
if vpnType == "ipvpn": # backward compat for ipvpn
dataplaneConfig['ipvpn'] = dict(
parser.items("DATAPLANE_DRIVER"))
logging.warning("Config file is obsolete, should have a "
"DATAPLANE_DRIVER_IPVPN section instead of"
" DATAPLANE_DRIVER")
else:
logging.error(
"Config file should have a DATAPLANE_DRIVER_EVPN section")
apiConfig = parser.items("API")
# TODO: add a default API config
config = {"bgpConfig": dict(bgpConfig),
"dataplaneConfig": dataplaneConfig,
"apiConfig": dict(apiConfig)
}
return config
def createS3TestsUsers(rgw_node, rgw_name):
config = SafeConfigParser()
config.read('s3tests/s3-tests.conf')
s3main_list = config.items('s3 main')[3:]
s3main_data = {}
s3main_data['client_key'] = "client.radosgw.%s" % (rgw_name)
for i in range (len(s3main_list)):
s3main_data[s3main_list[i][0]] = s3main_list[i][1]
s3main_usercreate_cmd = 'sudo radosgw-admin -n {client_key} user create --uid={user_id} --display-name=\"{display_name}\" \
--email={email} --access_key={access_key} --secret={secret_key} --key-type s3'.format(**s3main_data)
cmd = "ssh %s %s" % (rgw_node, s3main_usercreate_cmd)
rc,stdout,stderr = launch(cmd=cmd)
if rc != 0:
raise Exception, "Error while creating s3 main user'. Error message: '%s'" % (stderr)
s3alt_list = config.items('s3 alt')[3:]
s3alt_data = {}
s3alt_data['client_key'] = "client.radosgw.%s" % (rgw_name)
for i in range (len(s3alt_list)):
s3alt_data[s3alt_list[i][0]] = s3alt_list[i][1]
s3alt_usercreate_cmd = 'sudo radosgw-admin -n {client_key} user create --uid={user_id} --display-name=\"{display_name}\" \
--email={email} --access_key={access_key} --secret={secret_key} --key-type s3'.format(**s3alt_data)
cmd = "ssh %s %s" % (rgw_node, s3alt_usercreate_cmd)
rc,stdout,stderr = launch(cmd=cmd)
if rc != 0:
raise Exception, "Error while creating s3 alt user'. Error message: '%s'" % (stderr)
def parse_config(filename, dirs=None):
if dirs:
filenames = [os.path.join(d, filename) for d in dirs]
else:
filenames = [filename]
config = SafeConfigParser()
n = config.read(filenames)
if not len(n) >= 1:
raise PkgNotFound("Could not find file(s) %s" % str(filenames))
# Parse meta and variables sections
meta = parse_meta(config)
vars = {}
if config.has_section('variables'):
for name, value in config.items("variables"):
vars[name] = _escape_backslash(value)
# Parse "normal" sections
secs = [s for s in config.sections() if not s in ['meta', 'variables']]
sections = {}
requires = {}
for s in secs:
d = {}
if config.has_option(s, "requires"):
requires[s] = config.get(s, 'requires')
for name, value in config.items(s):
d[name] = value
sections[s] = d
return meta, vars, sections, requires
class JsonConfigParser(BaseConfigParser):
CONFIG_FILE = 'polygamy.json'
def parse_file(self):
with open(self.config_path) as config_file:
json_data = json.loads(config_file.read())
self.repositories = json_data['repos']
self.remotes = json_data['remotes']
self.preference_config = ConfigParser()
self.preference_config.add_section('groups')
self.preference_config.add_section('git')
self.preference_config.read(
os.path.join(self.config_dir, 'preferences.ini')
)
self.enabled_groups = {
k for k, v in self.preference_config.items('groups')
}
self.git_config = self.preference_config.items('git')
def save_preferences(self):
self.preference_config.remove_section('groups')
self.preference_config.add_section('groups')
for group in self.enabled_groups:
self.preference_config.set('groups', group, '')
with open(os.path.join(self.config_dir, 'preferences.ini'), 'w') as f:
self.preference_config.write(f)
def configure(config_file):
if not config_file:
print "==> ERROR: configuration file not specified!!!"
sys.exit(1)
else:
print "==> Reading configuration file..."
cf_parser = SafeConfigParser()
if len(cf_parser.read(config_file)) == 0:
print ('Cannot read configuration file: %s!' % config_file)
sys.exit(1)
for key,val in cf_parser.items('mnemos'):
globals() [key]=val
# logfile
global logfile
logfile=''+logdir+'/mnemos_publisher.log'
# touch logfile
if not os.path.exists(os.path.dirname(logfile)):
os.system('sudo mkdir -p '+os.path.dirname(logfile)+'')
os.system('sudo touch '+logfile+'')
os.system('sudo chown mnemos:mnemos '+logfile+'')
# config cloud plugin
global cloud_cf
cloud_cf = cf_parser.items(cloud_name)
# config database plugin
global db_cf
db_cf = cf_parser.items(db_name)
def reload_config(cls, filename):
cls.config_file = filename
print "Loading configuration from " + filename
if not os.path.isfile(filename):
print "Config file not found - failing"
sys.exit(1)
cls.remote = None
cls.local = None
cls.nova = None
parser = SafeConfigParser()
parser.read(filename)
if not parser.has_section('remote'):
print "No remote database configuration - failing"
sys.exit(1)
if not parser.has_section('local'):
print "No local database configuration - failing"
sys.exit(1)
if not parser.has_section('nova') and cls.nova is None:
print "No nova credentials provided - failing"
sys.exit(1)
cls.remote = {}
cls.local = {}
cls.nova = {}
for (name, value) in parser.items('remote'):
cls.remote[name] = value
for (name, value) in parser.items('local'):
cls.local[name] = value
for (name, value) in parser.items('nova'):
cls.nova[name] = value
verify_nova_creds(cls.nova)
def _from_stream(cls, stream, section, filename=None):
"helper for from_string / from_path"
# Py2k #
pos = stream.tell()
# end Py2k #
p = SafeConfigParser()
if py32_lang:
# Py3.2 deprecated readfp
p.read_file(stream, filename or "<???>")
else:
p.readfp(stream, filename or "<???>")
# Py2k #
try:
items = p.items(section)
except InterpolationSyntaxError, err:
if not _is_legacy_parse_error(err):
raise
#support for deprecated 1.4 behavior, will be removed in 1.6
if filename:
warn("from_path(): the file %r contains an unescaped '%%', this will be fatal in passlib 1.6" % (filename,), stacklevel=3)
else:
warn("from_string(): the provided string contains an unescaped '%', this will be fatal in passlib 1.6", stacklevel=3)
p = ConfigParser()
stream.seek(pos)
p.readfp(stream)
items = p.items(section)
def __init__( self ):
config = SafeConfigParser( defaults )
config.read( os.path.expanduser( "~/.pyjacksmrc" ) )
self.jackname = config.get( "DEFAULT", "jackclientname" )
# setup infra
if config.has_section( "infra" ):
self.infra_clients = {}
for inf in config.items( "infra" ):
self.infra_clients[inf[0]] = inf[1]
else:
self.infra_clients = { "a2j": "a2jmidid" }
# setup path
if config.has_section( "path" ):
self.path_map = {}
for p in config.items( "path" ):
self.path_map[p[0]] = p[1]
else:
self.path_map = {}
# implicit clients... should b conf too
self.implicit_clients = [ "system" ]
self.sessiondir = os.path.expanduser( config.get( "DEFAULT", "sessiondir" ) ) + "/"
self.templatedir = os.path.expanduser( config.get( "DEFAULT", "templatedir" ) ) + "/"
def items(self, section, raw=False, vars=None):
"""
Same as @c super.items(), but options from ancestors in the section
tree are included in the result.
"""
nodes = section.split('.')
config = dict(SafeConfigParser.items(self, nodes[0], raw, vars))
path = nodes[0]
# Now this is a pain. We have to clear the DEFAULT section, lest the
# code below overwrites the options that have defaults. The reason is
# that crappy ConfigParser does not have a method that enumerates only
# the keys defined in particular section; the keys in the DEFAULT
# section are always included.
tmp_defaults = self._defaults
self._defaults = {}
for node in nodes[1:]:
path = node if len(path) == 0 else path + '.' + node
try:
next_config = dict(SafeConfigParser.items(self, path, raw, vars))
for key in self.options(path):
# Overwrite only the keys defined in the child section
config[key] = next_config[key]
except ConfigParser.NoSectionError:
pass
self._defaults = tmp_defaults
return config.iteritems()
def _parse_config_files(self):
"""
Parse the possible config files and set appropriate values
default values
"""
parser = SafeConfigParser(self.defaults)
parser.read(self.config_files)
self.config = dict(parser.defaults())
if parser.has_section(self.command):
self.config.update(dict(parser.items(self.command, raw=True)))
for section in self.sections:
if parser.has_section(section):
self.config.update(dict(parser.items(section, raw=True)))
else:
raise NoSectionError("Mandatory section [%s] does not exist."
% section)
# filter can be either a list or a string, always build a list:
if self.config['filter']:
if self.config['filter'].startswith('['):
self.config['filter'] = eval(self.config['filter'])
else:
self.config['filter'] = [ self.config['filter'] ]
else:
self.config['filter'] = []
def read(self, filepath):
"""
read configuration file
@param filepath: full path to source file
@type filepath: str
@return: None
"""
# DEBUG: separate SafeConfigParser() instance per section really required (due to defaults)?
# preferences
cfg = SafeConfigParser(self.prefs)
cfg.read(filepath)
section = "preferences"
self.baseDir = os.path.expanduser(cfg.get(section, "baseDir"))
self.file_active = cfg.get(section, "file_active")
self.file_archive = cfg.get(section, "file_archive")
self.file_report = cfg.get(section, "file_report")
self.useUTC = cfg.get(section, "useUTC")
# colors
cfg = SafeConfigParser(self.colors)
cfg.read(filepath)
for k, v in cfg.items("colors"):
self.colors[k] = v
# highlight colors
cfg = SafeConfigParser(self.highlightColors)
cfg.read(filepath)
for k, v in cfg.items("highlights"):
self.colors[k] = v
def load_track(path,default_accessor="ArrayAccessor",**kwargs):
"""
Factory function that returns a Track instance to access the data stored in <path>.
It determines the correct ArrayAccessor to use by looking for the config file track.rc
in the directory.
"""
from ConfigParser import SafeConfigParser as ConfigParser, NoSectionError
import os
import byo.io.track_accessors as track_accessors
if path.endswith('.fa') or path.endswith('.fna') or path.endswith('.fasta'):
system,ext = os.path.splitext(os.path.basename(path))
return Track(os.path.dirname(path),track_accessors.GenomeAccessor,system=system,**kwargs)
elif path.endswith(".bam") and os.path.isfile(path):
return Track(path,track_accessors.BAMAccessor,description="BAM('%s')" % os.path.basename(path), **kwargs)
track_dict = dict(accessor_type=default_accessor,description=os.path.basename(path))
try:
cp = ConfigParser()
cp.read(os.path.join(path,"track.rc"))
track_dict.update(dict(cp.items("track")))
kwargs.update(dict(cp.items("kwargs")))
kwargs.update(track_dict)
#except IOError,NoSectionError:
# TODO: Do not just silence everything. Might shadow important issues
except:
pass
#from pprint import pprint
#pprint(kwargs)
accessor = getattr(track_accessors,track_dict["accessor_type"])
return Track(path,accessor,**kwargs)
def process_script(s):
out = ['--allowmissing']
cfg = SafeConfigParser()
cfg.readfp(file(s))
for k, v in cfg.items('args'):
out.append('--%s' % k)
out.append(v)
for rname in cfg.sections():
if rname == 'args':
continue
out.append('--delregion')
out.append(rname)
out.append('--newregion')
out.append(rname)
for k, v in cfg.items(rname):
if k == 'tiles':
k = 'setregiontiles'
out.append('--%s' % k)
out.append('%s=%s' % (rname, v))
return out
def parseConfig(f):
"""Use configparser module to parse configuration file
config file must be in right format, otherwise, server cannot start
This function returns 2 dictionaries:
- handle_servers stores requested server, handles server and weight
- constructed_cluster store requested server and handle server
This thing is ugly but it works :-)
"""
print 'Reading configuration file....'
cluster = {}
group = {}
constructed_cluster = {}
parser = SafeConfigParser()
parser.read(f)
if parser.has_section('farms'):
farm_list = [value for name, value in parser.items('farms')]
for item in farm_list[0].split(','):
if parser.has_section(item):
cluster[item] = {name:value for name, value in parser.items(item)}
else:
sys.stderr.write("Configuration file error, no item 'farms' defined\n")
sys.stderr.write("Exit!\n")
sys.exit(2)
for i in parser.get('farms','list').split(','):
list_redirect_domain = [parser.get(parser.get(i, 'list').split(',')[j], 'domain') for j in range(len(parser.get(i, 'list').split(','))) ]
constructed_cluster[parser.get(i, 'domain')] = list_redirect_domain
for server_group, server_list in cluster.iteritems():
temporary_list = []
origin_domain_name = server_list['domain']
servers = [server for server in server_list['list'].split(',')]
for s in servers:
temporary_list.append([v for k, v in parser.items(s) if v != 'on'])
group[origin_domain_name] = temporary_list
return (group, constructed_cluster)
class ConfigLoader(object):
def __init__(self, cfg_file):
self.config = SafeConfigParser()
with open(cfg_file, 'r') as config_file:
self.config.readfp(config_file)
self.login_script = self.config.get('system', 'login_script')
self.repo_path = self.config.get('system', 'repo_path')
self.repo_user = self.config.get('system', 'repo_user')
self.lock_script = self.config.get('system', 'lock_script')
def _filtered_sections(self, section_name):
for section in self.config.sections():
if section.startswith(section_name + ":"):
yield section
@staticmethod
def as_bool(value):
return value.lower() in ('yes', 'true', 'on')
@staticmethod
def as_list(value):
return [item.strip() for item in value.split(",")
if value]
@staticmethod
def clean_section_name(name):
return name.split(':')[1]
@property
def repos(self):
for section in self._filtered_sections('repo'):
values = dict(self.config.items(section))
values['path'] = self.clean_section_name(section)
yield Repository.from_config(values, self.repo_path,
self.lock_script)
@property
def users(self):
for section in self._filtered_sections('user'):
values = dict(self.config.items(section))
values['username'] = self.clean_section_name(section)
yield User.from_config(values, self.login_script)
@property
def user_dict(self):
return dict((user.username, user) for user in self.users)
@property
def repo_user_authorized_keys(self):
home_dir = os.path.expanduser('~' + self.repo_user)
if '~' in home_dir:
raise ValueError("User {0!r} doesn't exist".format(self.repo_user))
return os.path.join(home_dir, '.ssh', 'authorized_keys')
def get_config(config_file='seq2seq.ini'):
parser = SafeConfigParser()
parser.read(config_file)
# get the ints, floats and strings
_conf_ints = [ (key, int(value)) for key,value in parser.items('ints') ]
_conf_floats = [ (key, float(value)) for key,value in parser.items('floats') ]
_conf_strings = [ (key, str(value)) for key,value in parser.items('strings') ]
return dict(_conf_ints + _conf_floats + _conf_strings)
def test_command_config_with_invalid_smtp(self):
config_changed = self.mm_config_fill()
citems = self.get_default_config_scheme()
config = SafeConfigParser()
config.read(self.config_path)
assert config.has_section('Mail')
assert config.items('Mail') == citems, \
"\n[%s]\n[%s]" % (config.items('Mail'), citems)
def get_setup():
config = SafeConfigParser()
config.read(['setup.cfg'])
options = dict(config.items('options'))
database = dict(config.items('database'))
creds = dict(config.items('twitter_credentials'))
return database, options, creds
def _parse_config(self, cnf_file):
if not os.path.isfile(cnf_file):
raise NoConfigError('Filename %s not found' % cnf_file)
cnf = SafeConfigParser()
cnf.read(cnf_file)
self.db_cnf = dict(cnf.items("db"))
self.svn_cnf = dict(cnf.items("svn"))
def _get_file(self, config):
""" Read a per-user .ini file, which is expected to have either
a ``[scraperkit]`` or a ``[$SCRAPER_NAME]`` section. """
config_file = SafeConfigParser()
config_file.read([os.path.expanduser('~/.scrapekit.ini')])
if config_file.has_section('scrapekit'):
config.update(dict(config_file.items('scrapekit')))
if config_file.has_section(self.scraper.name):
config.update(dict(config_file.items(self.scraper.name)))
return config
def _loadConfig (self):
config = SafeConfigParser()
# TODO: exception for lack of .cfg
config.read(os.path.join(INSTALL_DIR,'osimage-autotest.cfg'))
confitens = config.items('global')
for param,value in confitens:
self.engineConfig[param] = value
confitens = config.items(self.engineConfig['virt'])
for param,value in confitens:
self.virtPlayerConfig[param] = value
def get_metadata_and_options():
config = SafeConfigParser()
config.read(['metadata.cfg', 'site.cfg'])
metadata = dict(config.items('metadata'))
options = dict(config.items('options'))
metadata['py_modules'] = list(filter(None, metadata['py_modules'].split('\n')))
metadata['classifiers'] = list(filter(None, metadata['classifiers'].split('\n')))
return metadata, options
def get_metadata_and_options():
config = SafeConfigParser()
config.read(["metadata.cfg", "site.cfg"])
metadata = dict(config.items("metadata"))
options = dict(config.items("options"))
metadata["py_modules"] = filter(None, metadata["py_modules"].split("\n"))
metadata["classifiers"] = filter(None, metadata["classifiers"].split("\n"))
return metadata, options
def parse_ini(instance_type, check_all=True):
parser = SafeConfigParser()
parser.read(os.path.abspath('fabfile/conf/conf.ini'))
parser.set('CONFIG', 'AFP_PATH',
os.path.join(os.path.dirname(__file__), os.path.pardir))
parser.set('CONFIG', 'SSH_SETTING_PATH', _base('settings/ssh'))
parser.set('PRODUCTION_ENV_CONFIG', 'AWS_ACCESS_KEY_ID', ec2_key)
parser.set('PRODUCTION_ENV_CONFIG', 'AWS_SECRET_ACCESS_KEY', ec2_secret)
parser.set('STAGING_ENV_CONFIG', 'AWS_ACCESS_KEY_ID', ec2_key)
parser.set('STAGING_ENV_CONFIG', 'AWS_SECRET_ACCESS_KEY', ec2_secret)
fabconf = {}
_green("Parsing conf.ini file")
for name, value in parser.items('CONFIG'):
# print ' %s = %s' % (name, value)
fabconf['%s' % name.upper()] = value
for name, value in parser.items('%s' % env.environment.upper()):
# print ' %s = %s' % (name, value)
fabconf['%s' % name.upper()] = value
if instance_type == 'messagingserver':
fabconf['INSTANCE_NAME_TAG'] = "MessagingServer"
fabconf['INSTANCE_RECIPE'] = "messagingserver"
env_config = {}
for name, value in parser.items('%s_ENV_CONFIG' % env.environment.upper()):
# print ' %s = %s' % (name, value)
env_config['%s' % name.upper()] = value
fabconf['ENV_VARS'] = ','.join('{}="{}"'.format(i, k)
for i, k in env_config.items())
env.fabconf = fabconf
env.env_config = env_config
env.ec2_amis = [fabconf['EC2_AMIS']]
env.ec2_keypair = fabconf['EC2_KEYPAIR']
env.ec2_secgroups = [fabconf['EC2_SECGROUPS']]
env.ec2_instancetype = fabconf['EC2_INSTANCETYPE']
print(_yellow("SSH private key verification..."))
try:
open(fabconf['SSH_PRIVATE_KEY_PATH']).read()
except Exception, e:
print(_red("SSH private key does not exist in the provided path %s !" %
fabconf['SSH_PRIVATE_KEY_PATH']))
exit()
def get_scrapycfg_targets(cfgfiles=None):
cfg = SafeConfigParser()
cfg.read(cfgfiles or [])
baset = dict(cfg.items('deploy')) if cfg.has_section('deploy') else {}
targets = {}
targets['default'] = baset
for x in cfg.sections():
if x.startswith('deploy:'):
t = baset.copy()
t.update(cfg.items(x))
targets[x[7:]] = t
return targets
def Main():
parser = argparse.ArgumentParser(description='Turbidostat controller.')
parser.add_argument("-c", "--config_filename", default="config.ini",
help="Where to load configuration from.")
args = parser.parse_args()
# Startup stacktracer for debugging deadlock
stacktracer.trace_start("trace.html", interval=60, auto=True)
# Read configuration from the config file
config = SafeConfigParser()
print 'Reading config file from', args.config_filename
config.read(args.config_filename)
controller_params = dict(config.items('controller'))
port_names = dict(config.items('ports'))
pump_params = dict(config.items('pump'))
logs = dict(config.items('log'))
# Open ports
cont_port = serial.Serial(port_names['controllerport'],
int(controller_params['baudrate']),
timeout=4,
writeTimeout=1)
cont_port.lock = threading.RLock()
if (port_names['pumpport'].upper()!='NONE'):
pump_port = serial.Serial(port_names['pumpport'],
int(pump_params['baudrate']),timeout = 1,
writeTimeout = 1)
pump_port.lock = threading.RLock()
else:
pump_port = None
# Make and start the controler
cont = Controller(controller_params, logs, pump_params,
cont_port, pump_port)
cont.start()
# Setup network configue port
def cb(cmd):
if 'list' in cmd:
return str(controller_params)
netserv = CTBasicServer(('', int(port_names['network'])), cb)
netserv.start()
print 'num threads: ' + str(len(sys._current_frames().keys()))
# Run until a keyboard interrupt.
try:
while True:
time.sleep(1)
except KeyboardInterrupt:
print 'shutting down'
cont.quit()
time.sleep(1.1)
def from_file(cls, filename):
config = SafeConfigParser()
config.read(filename)
metadata = dict(config.items('metadata'))
required_vars = map(operator.itemgetter(1),
config.items('required_vars'))
return TemplateManifest(metadata=metadata,
required_vars=required_vars)
def loadConfiguration(path):
print 'Load configuration files settings'
configAll = SafeConfigParser()
configAll.read(path)
profile = dict(configAll.items('profile'))
owncloud = dict(configAll.items('owncloud'))
stacksync = dict(configAll.items('stacksync'))
log_server = dict(configAll.items('log_server'))
graphite = dict(configAll.items('graphite'))
return {'profile': profile,
'ss': {'owncloud': owncloud, 'stacksync': stacksync},
'ls': log_server,
'graphite': graphite}
def getConf(cfgType):
conf = {'auth':{},
'backup':{}}
config = SafeConfigParser()
config.read('conf/auth/'+cfgType+'.auth')
for arg in config.items('auth'):
conf['auth'][arg[0]] = arg[1]
config.read('conf/'+cfgType+'.cfg')
for arg in config.items('backup'):
conf['backup'][arg[0]] = arg[1]
return conf
def get_host_modules(app, host_name=None, appman_file=None, config_dir=CONFIG_DIR):
'''
Get a list of all hosts in the appman.conf file, and a list of modules
to start on each host. If a specific host is queried, return a list
just for that host
'''
hosts = {}
if appman_file is None:
appman_file = 'appman.conf'
conf_file = os.path.join(config_dir, app, appman_file)
parser = SafeConfigParser()
if not os.path.isfile(conf_file):
raise ValueError('%s not found' % (conf_file))
parser.read(conf_file)
for section in parser.sections():
if section[:7] == 'module ':
module = section[7:]
config = dict(parser.items(section))
host = DEFAULT_HOST
if 'host' in config:
host = config['host']
if host_name is not None:
if host != host_name:
continue
if host not in hosts:
hosts[host] = []
hosts[host].append(module)
return hosts
def read_bitcoin_config(dbdir):
"""Read the wavi.conf file from dbdir, returns dictionary of settings"""
from ConfigParser import SafeConfigParser
class FakeSecHead(object):
def __init__(self, fp):
self.fp = fp
self.sechead = '[all]\n'
def readline(self):
if self.sechead:
try:
return self.sechead
finally:
self.sechead = None
else:
s = self.fp.readline()
if s.find('#') != -1:
s = s[0:s.find('#')].strip() + "\n"
return s
config_parser = SafeConfigParser()
config_parser.readfp(FakeSecHead(open(os.path.join(dbdir, "wavi.conf"))))
return dict(config_parser.items("all"))
class ConfigWrapper(object):
def __init__(self, path):
self.__path = path
self.__parser = SafeConfigParser(DEFAULTS)
self.__parser.read(path)
def __getattr__(self, section):
return self[section]
def __getitem__(self, section):
return SectionWrapper(config=self, section=section)
def __hasattr__(self, section):
return section in self
def __contains__(self, section):
return self.__parser.has_section(section)
def add_section(self, section):
self.__parser.add_section(section)
def _get_option(self, section, option):
return self.__parser.get(section, option)
def _set_option(self, section, option, value):
self.__parser.set(section, option, value)
with open(self.__path, 'wb') as configfile:
self.__parser.write(configfile)
def _has_option(self, section, option):
return self.__parser.has_option(section, option)
def _iter(self, section):
return iter(self.__parser.items(section))
#!/usr/bin/python
#-*- coding: UTF-8 -*-
from ConfigParser import SafeConfigParser
parser = SafeConfigParser()
parser.read('multisection.ini')
for section_name in parser.sections():
print 'Section:', section_name
print 'Options:', parser.options(section_name)
for name, value in parser.items(section_name):
print ' {0} = {1}'.format(name, value)
print
def main():
if len(sys.argv) < 4:
print "Usage: sourceDir resultDir configFile"
sys.exit(1)
sourceDir = sys.argv[1]
resultDir = sys.argv[2]
configFile = sys.argv[3]
inetnumFilePath = os.path.join(sourceDir, "inetnum")
if not os.path.exists(inetnumFilePath):
print "{0} doesn't exist".format(inetnumFilePath)
sys.exit(1)
orgFilePath = os.path.join(resultDir, "org_lacnic")
mapFilePath = os.path.join(resultDir, "inetnum_org_lacnic")
orgFd = open(orgFilePath, "w")
mapFd = open(mapFilePath, "w")
onlyStartRe = re.compile("^{\n?$", re.I)
endStartRe = re.compile("^}{\n?$", re.I)
onlyEndRe = re.compile("^}\n?$", re.I)
configParser = SafeConfigParser()
configParser.read(configFile)
orgConfig = configParser.items("org")
keys = []
for key, option in orgConfig:
keys.append(key)
orgFd.write("\t".join(keys) + "\n")
netOrgMap = {}
orgKeys = {}
currObj = None
currJsonList = []
orgNum = 0
objNum = 0
lineNum = 0
with open(inetnumFilePath, "r") as fd:
for line in fd:
lineNum += 1
if currObj: #current in a json object
isEnd = False
isStart = False
if endStartRe.match(
line): #match }{, got a complete json object
isEnd = True
isStart = True
elif onlyEndRe.match(line):
isEnd = True
else:
currJsonList.append(line)
continue
if isEnd:
currJsonList.append("}")
objNum += 1
if objNum % 10000 == 0:
print "process {0} objects and {1} of them have org".format(
objNum, orgNum)
response = getOrgInfo(currJsonList)
if response[0] == 1:
orgNum += 1
resultDict = response[1]
netKey = response[2]
orgKey = response[3]
if not orgKeys.has_key(orgKey):
resultDict['type'] = "organisation"
tempResp = crossMatch(resultDict, orgConfig)
if tempResp[0] == 1:
resultList = tempResp[1]
orgFd.write("\t".join(resultList) + "\n")
orgKeys[orgKey] = 1
netOrgMap[response[2]] = response[3]
else:
print "{0}".format(currJsonList)
currObj = None
currJsonList = []
if isStart:
currJsonList = ["{"]
currObj = 1
continue
else:
if onlyStartRe.match(line):
currObj = 1
currJsonList.append("{")
else:
print "error process line at {0}: {1}".format(
lineNum, line)
sys.exit(1)
for netKey in netOrgMap:
mapFd.write("\t".join([netKey, netOrgMap[netKey]]) + "\n")
print "finish processing {0} objects and {1} of them have org".format(
objNum, orgNum)
orgFd.close()
mapFd.close()
def generate_components_config():
settings = {}
settings["sahara"] = s2b(cluster_settings.get('sahara', 'false'))
settings["murano"] = s2b(cluster_settings.get('murano', 'false'))
settings["ceilometer"] = s2b(cluster_settings.get('ceilometer', 'false'))
settings["volumes_lvm"] = s2b(cluster_settings.get('volumes_lvm', 'false'))
settings["volumes_ceph"] = s2b(
cluster_settings.get('volumes_ceph', 'false'))
settings["images_ceph"] = s2b(cluster_settings.get('images_ceph', 'false'))
settings["ephemeral_ceph"] = s2b(
cluster_settings.get('ephemeral_ceph', 'false'))
settings["osd_pool_size"] = cluster_settings.get('osd_pool_size', 1)
return settings
def s2b(v):
return v.lower() in ("yes", "true", "t", "1")
if __name__ == '__main__':
parser = SafeConfigParser()
parser.read(argv[1])
cluster_settings = dict(parser.items('cluster'))
fuel_ip = argv[2]
kvm_count = int(cluster_settings.get('node_count'))
delete_environment()
create_environment()
deploy_environment()
await_deploy()
parser.read('health_monitor.ini')
# Read path to log file
LOG_FILENAME = parser.get('config', 'log_filename')
# monitoring period in seconds
MONITORING_PERIOD = parser.getint('config', 'monitoring_period')
# minimum logging period in seconds
MIN_LOG_PERIOD = parser.getint('config', 'min_log_period')
# remote logging URL
REMOTELOG_URL = parser.get('config', 'remotelog_url')
# List of monitored devices names and IP addresses
MONITORED_DEVICES = parser.items('monitored_devices')
#################
# LOGGING SETUP
#################
LOG_LEVEL = logging.INFO # Could be e.g. "DEBUG" or "WARNING"
# Configure logging to log to a file, making a new file at midnight and keeping the last 3 day's data
# Give the logger a unique name (good practice)
logger = logging.getLogger(__name__)
# Set the log level to LOG_LEVEL
logger.setLevel(LOG_LEVEL)
# Make a handler that writes to a file, making a new file at midnight and keeping 3 backups
handler = logging.handlers.TimedRotatingFileHandler(LOG_FILENAME,
when="midnight",
backupCount=3)
class EasyConfig(object):
"""
This class is a wrapper for python's SafeConfigParser. The purpose of
this class is to allow for more convenient use of the ConfigParser,
along with adding built-in support for list type.
Additionally, the class handle the type conversion implicitly inside
it, so config options are retrieved with their appropriate type.
Accessing configuration options with the class is performed as if the
options where class members, so, for example, if the configuration file
as the following section and item:
[SomeSection]
some_item = some_value
Then, accessing the item will look like that:
conf = EasyConfig("path_to_config.ini")
print conf.SomeSection.some_item # Will print "some_value"
conf.SomeSection.some_item = 3.14
print conf.SomeSection.some_item # Will print 3.14
conf.SomeSection.some_item += 0.01
print conf.SomeSection.some_item # Will print 3.15
A list config item is written as if it was a python's legit list deler-
ation. For example:
[SomeSection]
some_list = [1, 2, 3]
"""
def __init__(self, config):
"""
The class is initialized with a path to a configuration file passed
via config, or a file-like object.
"""
self.parser = SafeConfigParser()
if isinstance(config, basestring):
self.config_path = config
config = open(self.config_path, "r")
else:
self.config_path = None
self.parser.readfp(config)
for section in self.parser.sections():
options = self.parser.items(section)
options = map(lambda op: Option(*op), options)
self.add_section(Section(section, options))
def __iter__(self):
""" Iterate over all the section in the configuration. """
for section in self.__dict__.values():
if isinstance(section, Section):
yield section
def __iadd__(self, section):
"""
If section is of type Section, adds the section to the
config (if it's not already present). Otherwise, the operator does
nothing.
"""
self.add_section(section)
return self
def add_section(self, section):
"""
Adds a new section to the config. If section is str, it's converted
to Section object. If section is Section, it's left untouched.
If a section with the same name does not already exists in the
config, it's added, and the function returns True. If such section
already exists, the call is ignored, and the function return False.
"""
if isinstance(section, Section):
section_name = section.name
elif isinstance(section, str):
section_name = section
section = Section(section)
else:
raise TypeError("section should be either str or Section")
if not self.__dict__.has_key(section_name):
setattr(self, section_name, section)
return True
else:
return False
def save(self, config = None):
"""
Will pass the configuration to the ConfigParser module, and save
the configuration.
If config is none, the configuration will be saved in the path
with which the object was initialized.
If config is a path to a file, the configuration will be saved in
that file. If config is a file-like object, it will be written to
it.
"""
if not config:
if not self.config_path:
raise RuntimeError(
"No output defined (either path or file-like object.")
config = open(self.config_path, "w")
elif isinstance(config, basestring):
config = open(config, "w")
self.update_parser()
self.parser.write(config)
def update_parser(self):
"""
Updates the state of the internal ConfigParser.
"""
for section in self:
if not self.parser.has_section(str(section)):
self.parser.add_section(str(section))
for option in section:
self.parser.set(str(section), str(option), option.value_str)
def upgrade(self, other_easy_config):
"""
Adds all the values from the other config to the current config. If
the other config contains options that are already present in the
current config, the new options are ignored.
"""
for other_section in other_easy_config:
# False means that such section name already exists.
if not self.add_section(other_section):
for other_option in other_section:
section = getattr(self, other_section.name)
section += other_option
def __init__(self, params, status, calib_data, service_name):
"""
:param params: pywws configuration.
:type params: :class:`pywws.DataStore.params`
:param status: pywws status store.
:type status: :class:`pywws.DataStore.status`
:param calib_data: 'calibrated' data.
:type calib_data: :class:`pywws.DataStore.calib_store`
:param service_name: name of service to upload to.
:type service_name: string
"""
self.logger = logging.getLogger('pywws.ToService(%s)' % service_name)
self.params = params
self.status = status
self.data = calib_data
self.service_name = service_name
# 'derived' services such as 'underground_rf' share their
# parent's config and templates
config_section = self.service_name.split('_')[0]
if config_section == self.service_name:
self.parent = None
else:
self.parent = config_section
self.old_response = None
self.old_ex = None
self.http_headers = None
# set default socket timeout, so urlopen calls don't hang forever
if eval(self.params.get('config', 'asynchronous', 'False')):
socket.setdefaulttimeout(60)
else:
socket.setdefaulttimeout(20)
# open params file
service_params = SafeConfigParser()
service_params.optionxform = str
param_string = pkg_resources.resource_string(
'pywws', 'services/%s.ini' % (self.service_name))
if sys.version_info[0] >= 3:
param_string = param_string.decode('utf-8')
service_params.readfp(StringIO.StringIO(param_string))
# get URL
self.server = service_params.get('config', 'url')
parsed_url = urlparse.urlsplit(self.server)
if parsed_url.scheme == 'aprs':
self.send_data = self.aprs_send_data
server, port = parsed_url.netloc.split(':')
self.server = (server, int(port))
elif parsed_url.scheme == 'mqtt':
self.send_data = self.mqtt_send_data
else:
self.send_data = self.http_send_data
self.use_get = eval(service_params.get('config', 'use get'))
# get fixed part of upload data
self.fixed_data = dict()
for name, value in service_params.items('fixed'):
if value[0] == '*':
value = self.params.get(config_section, value[1:], 'unknown')
self.fixed_data[name] = value
# create templater
self.templater = Template.Template(self.params,
self.status,
self.data,
self.data,
None,
None,
use_locale=False)
template_name = self.params.get(config_section, 'template', 'default')
if template_name != 'default':
template_dir = self.params.get(
'paths', 'templates',
os.path.expanduser('~/weather/templates/'))
self.template_file = open(
os.path.join(template_dir, template_name), 'rb')
else:
template_name = 'services/%s_template_%s.txt' % (
config_section, self.params.get('config', 'ws type'))
if not pkg_resources.resource_exists('pywws', template_name):
template_name = 'services/%s_template_1080.txt' % (
config_section)
self.template_file = pkg_resources.resource_stream(
'pywws', template_name)
# get other parameters
self.auth_type = service_params.get('config', 'auth_type')
if self.auth_type == 'basic':
user = self.params.get(config_section, 'user', 'unknown')
password = self.params.get(config_section, 'password', 'unknown')
details = user + ':' + password
self.auth = 'Basic ' + base64.b64encode(
details.encode('utf-8')).decode('utf-8')
elif self.auth_type == 'mqtt':
self.user = self.params.get(config_section, 'user', 'unknown')
self.password = self.params.get(config_section, 'password',
'unknown')
self.catchup = eval(service_params.get('config', 'catchup'))
self.expected_result = eval(service_params.get('config', 'result'))
self.interval = eval(service_params.get('config', 'interval'))
self.interval = max(self.interval, 40)
self.interval = timedelta(seconds=self.interval)
if service_params.has_option('config', 'http_headers'):
self.http_headers = eval(
service_params.get('config', 'http_headers'))
# move 'last update' from params to status
last_update = self.params.get_datetime(self.service_name,
'last update')
if last_update:
self.params.unset(self.service_name, 'last update')
self.status.set('last update', self.service_name,
last_update.isoformat(' '))
# set timestamp of first data to upload
self.next_update = datetime.utcnow() - max(
timedelta(days=self.catchup), self.interval)
class Model:
def __init__(self):
# gui flag
self.gui = False
# cred config section
self.taxicompany = False
self.rentcompany = False
self.countercars = 0
self.allcars = 0
self.currentfirstcar = 0
self.phonenumbersgiven = False
self.phonenumbers = []
# flag config section
self.loginwifi = False
self.creategoogleaccount = False
self.installapps = False
self.pairdriverapp = False
self.configuresettings = False
# wifi config section
self.wifissid = ""
self.wifipw = ""
# create google account config section
self.birthday = "00"
self.birthmonth = "00"
self.birthyear = "0000"
self.customerfirstname = ""
self.customerlastname = ""
# # install apps config section
self.installappsps = []
self.installappslf = []
self.startapps = []
self.simpins = []
# pair driver app config section
self.drivername = ""
self.driverpw = ""
# configure settings config section
self.configurepowersavingmode = False
self.configurehomescreen = False
self.configurelockscreenapp = False
self.configurelocationsettings = False
self.configuresoundsettings = False
self.disablesimlock = False
self.configurescreenbrightness = False
self.disabledevoptions = False
self.rebootdevicewhenfinished = False
# configure device lock
self.enablelockdevice = False
self.lockpattern = -1
# which mode should start ? (-c = Config Mode)
if len(sys.argv) > 0 and sys.argv[1] == '-c':
debug_print("Read Config")
self.parser = SafeConfigParser()
self.mode = ScriptMode.configmode
self.interactivemode = None
self.parser.read('../config.cfg')
for section_name in self.parser.sections():
print 'Section:', section_name
if section_name == "cred":
self._iterateoverlistandaddproperties(self.parser.items(section_name))
if section_name == "flags":
self._iterateoverlistandaddproperties(self.parser.items(section_name), True)
print ' Options:', self.parser.options(section_name)
for name, value in self.parser.items(section_name):
print ' %s = %s' % (name, value)
if len(sys.argv) > 2:
if sys.argv[2] == '-g':
debug_print("GUI will be displayed")
self.gui = True
else:
debug_print("Interactive Mode")
self.mode = ScriptMode.interactivemode
self.interactivemode = InteractiveMode()
self.parser = None
def __str__(self):
return str(self.__class__) + ": " + str(self.__dict__)
def _iterateoverlistandaddproperties(self, list, flagcred=None):
if flagcred is None:
for name, value in list:
for ownattribute in [a for a in dir(self) if not a.startswith('__') and not callable(getattr(self, a))]:
if name == ownattribute:
setattr(self, name, value)
print "Added to own model: " + name + " and value: " + value
else:
for name, value in list:
for ownattribute in [a for a in dir(self) if not a.startswith('__') and not callable(getattr(self, a))]:
if name == ownattribute:
setattr(self, name, value)
print "Added to own model: " + name + " and value: " + value
if bool(value):
self._iterateoverlistandaddproperties(self.parser.items(name))
def get_current_birthday(self):
if int(self.birthday) == 28:
self.birthday = 1
return self.birthday
self.birthday += 1
return self.birthday
def get_current_birthmonth(self):
if int(self.birthmonth) == 12:
self.birthmonth = 1
return self.birthmonth
self.birthmonth += 1
return self.birthmonth
def get_current_birthyear(self):
if self.birthyear == 1995:
self.birthyear = 1951
return self.birthyear
self.birthyear += 1
return self.birthyear
def main_thread():
parser = create_parser()
opt = parser.parse_args()
conf = SafeConfigParser()
if opt.conf:
conf.readfp(opt.conf)
elif opt.reset:
conf.readfp(opt.reset)
elif opt.list:
conf.readfp(opt.list)
else:
parser.print_help()
return
workspace_ = conf.get('common', 'workspace')
try:
os.makedirs(workspace_)
except OSError:
pass
if opt.reset:
Filter(workspace_).reset()
return
if opt.list:
keys = Filter(workspace_).list_doing_task()
for k in keys:
print k
return
output_service_conf = dict(conf.items('source'))
input_service_conf = dict(conf.items('destination'))
if conf.has_option('common', 'threads'):
_threads = conf.getint('common', 'threads')
else:
_threads = 10
if conf.has_option('common', 'record_succ'):
_record_succ = conf.getboolean('common', 'record_succ')
else:
_record_succ = True
print _record_succ
log_config['handlers']['error_file']['filename'] = path.join(workspace_, 'failed_files.txt')
dictConfig(log_config)
loads_services()
output_service = services_[output_service_conf['type']](**output_service_conf)
input_service = services_[input_service_conf['type']](**input_service_conf)
migrator = ThreadMigrator(input_service=input_service,
output_service=output_service,
work_dir=conf.get('common', 'workspace'),
threads=_threads,
record_succ=_record_succ)
migrator.start()
import time
try:
while True:
state = migrator.status()
if state['finish']:
break
time.sleep(3)
except KeyboardInterrupt:
state = migrator.status()
print state
#import sys
#sys.exit()
migrator.stop()
state = migrator.status()
print 'summary:\n ', 'failed: ', state['fail'], ' success: ', state['success']
def get_search_names(path="/etc/geode/settings.conf", raw=False):
"""Gets all of the search in the config file"""
parser = SCP()
parser.read(path)
return [search[0] for search in parser.items("Searches", raw=raw)]
class ClusterDiagram(MultiprocessingBase):
def __init__(self, abort_event):
super(ClusterDiagram, self).__init__(abort_event)
self.name = 'ClusterDiagram'
self.project = None
self.files = []
#general options
self.tags = []
self.order = []
self.marks = set()
self.colors = {}
# display options (also in general section)
self.pagesize = 'A4'
self.default_color = colors.grey
self.no_border = False
self.no_color = False
#crosslinks options
self.add_crosslinks = True
self.min_identity = 0
self.min_length = 0
self.evalue = 10
#label options
self.name_size = 9
self.gene_size = 10
self.unknown_gene_size = 7
self.gene_angle = 15
#results
self.clusters = []
self.fsets = []
self.crosslinks = []
self.diagram = None
def _get_option(self, section, option, default, conv=None):
try:
val = self.project.get(section, option)
if conv is not None: val = conv(val)
except (ConfigError, ValueError): val = default
return val
def load(self, project_file, overrides=None): #TODO: implement overrides
self.project = SafeConfigParser()
try: self.project.read(project_file)
except ConfigError as e:
print 'Unable to load %s:\n%s' % (project_file, str(e))
return False
# parse general section
if not self.project.has_section('general'):
print 'Malformed project file.\nNo "general" section in %s' % project_file
return False
self.tags = shlex.split(self._get_option('general', 'tags', ''))
if not self.tags:
print 'No "tags" were value was found in "general" section in %s' % project_file
return False
self.name = project_file
self.order = shlex.split(self._get_option('general', 'order', ''))
self.marks = set(shlex.split(self._get_option('general', 'marks', '')))
self.pagesize = self._get_option('general', 'page_size', 'A4')
self.no_border = self._get_option('general', 'no_border', None) is not None
self.no_color = self._get_option('general', 'no_color', None) is not None
self.default_color = self._get_option('general', 'default_color', '')
if self.default_color:
self.default_color = colors.HexColor(self.default_color)
else: self.default_color = colors.grey
# files section
self.files = []
if self.project.has_section('files'):
dir = self._get_option('files', 'dir', '')
files = shlex.split(self._get_option('files', 'files', ''))
if files:
self.files = list(chain.from_iterable(glob(os.path.join(dir, f)) for f in files))
# crosslinks options
self.add_crosslinks = self.project.has_section('crosslinks')
if self.add_crosslinks:
self.min_identity = self._get_option('crosslinks', 'min_identity', 0, float)
self.min_length = self._get_option('crosslinks', 'min_length', 0, float)
self.evalue = self._get_option('crosslinks', 'evalue', 10, float)
# colors if have/needed
if not self.no_color:
if self.project.has_section('colors'):
self.colors = dict((gene, colors.HexColor(col))
for gene, col in self.project.items('colors'))
#else, colors will be generated automatically after the clusters are extracted
# label options
self.name_size = max(6, self._get_option('labels', 'name_size', 10, int))
self.gene_size = max(6, self._get_option('labels', 'gene_size', 10, int))
self.unknown_gene_size = max(6, self.gene_size - 2)
self.gene_angle = self._get_option('labels', 'gene_angle', 15, float)
return True
@staticmethod
def _feature_name(f, quals=('gene', 'locus_tag'), default='unknown'):
for q in quals:
val = f.qualifiers.get(q)
if not val: continue
return ' '.join(val)
return default
@MultiprocessingBase.data_mapper_method
@shelf_result
def _process_genome(self, gi, recs):
record = recs[gi]
clusters = []
for tag in self.tags:
tag_clusters = []
for f in record.features:
# cluster annotation
q = f.qualifiers.get(ClusterFinder.tag_qualifier)
if not q: continue
if tag != ' '.join(q): continue
cluster = f.extract(record)
copy_attrs(record, cluster)
if tag_clusters: cluster.description += ' cluster %d' % (len(tag_clusters)+1)
cluster = _DiagramCluster(cluster, f.location)
cluster.set_genes(f.qualifiers.get(ClusterFinder.genes_qualifier, []))
cluster.marked = record.id in self.marks
tag_clusters.append(cluster)
if tag_clusters: clusters += tag_clusters
return clusters
def _generate_gene_colors(self):
if not self.clusters: return
full_gene_set = set()
for c in self.clusters:
full_gene_set.update(c.genes)
if 'NONE' in full_gene_set:
full_gene_set.remove('NONE')
ngenes = float(len(full_gene_set))-1
middle = ngenes/2.0
self.colors = {}
for i, gene in enumerate(sorted(full_gene_set)):
t = i/ngenes
if i < middle:
c = colors.linearlyInterpolatedColor(colors.Color(1, 0, 0, 1), colors.Color(0, 1, 0, 1), 0, 1, t*2)
else:
c = colors.linearlyInterpolatedColor(colors.Color(0, 0.9, 0.1, 1), colors.Color(0, 0, 1, 1), 0, 1, t*2-1)
self.colors[gene] = c
def extract_clusters(self):
self.clusters = []
genomes = SeqView.safe_load(self.files)
if not genomes: return False
glen = len(genomes)
self.clusters = [None]*glen
if self.order: self.order = [oid for oid in self.order if oid in genomes.keys()]
with ProgressCounter('Extracting clusters from provided genomes:', glen) as prg:
work = self.Work()
work.start_work(self._process_genome, self.order or genomes.keys(), None, genomes)
work.assemble(ordered_shelved_results_assembler, self.clusters, prg)
if not work.wait(): return False
self.clusters = list(chain.from_iterable(c for c in self.clusters if c))
#generate gene colors if needed
if not self.no_color and not self.colors:
self._generate_gene_colors()
return bool(self.clusters)
@MultiprocessingBase.data_mapper_method
def _blast_feature(self, f, c1, c2):
trans = Translator(self._abort_event)
cds = trans.translate(f.extract(c1), 11)
sixframes = trans.translate_six_frames_single(c2, 11)
if not sixframes: return [(None, None, None)]
results = []
for frame in sixframes:
res = BlastCLI.s2s_blast(cds, frame, self.evalue, command='blastp', task='blastp')
if res: results.extend(res)
hsps = BlastCLI.all_hsps(results)
if not hsps: return [(None, None, None)]
f1 = []
f2 = []
col = []
fname = self._feature_name(f, default='CDS')
cds_len = len(cds)
min_len = len(cds) * self.min_length
for hsp in hsps:
if hsp.align_length < min_len: continue
if hsp.identities / float(hsp.align_length) < self.min_identity: continue
color_t = (float(hsp.identities) / hsp.align_length)
print '%s %s: %5.1f%% (%5.1f%%)' % (c1.description, fname, color_t * 100, float(hsp.identities) / cds_len * 100)
col.append(colors.linearlyInterpolatedColor(colors.Color(0, 0, 1, 0.2), colors.Color(0, 1, 0, 0.2),
0.2, 1, color_t))
qstart = (hsp.query_start - 1) * 3
qend = qstart + hsp.align_length * 3
sstart = (hsp.sbjct_start - 1) * 3
send = sstart + hsp.align_length * 3
f1.append(
SeqFeature(FeatureLocation(f.location.start + qstart, f.location.start + qend, strand=hsp.strand[0])))
f2.append(SeqFeature(FeatureLocation(sstart, send, strand=hsp.strand[1])))
return zip(f1, f2, col)
@MultiprocessingBase.results_assembler_method
def _compose_crosslink(self, index, result, features1, features2):
for f1, f2, col in result:
if f1 is None: continue
if self.no_color: col = colors.color2bw(col)
tf1 = features1.add_feature(f1, color=col, border=col)
tf2 = features2.add_feature(f2, color=col, border=col)
self.diagram.cross_track_links.append(CrossLink(tf1, tf2, col, col))
def _compose_crosslinks(self):
if not self.diagram or not self.fsets: return
print 'Finding crosslinks between genes in the cluster.'
num_cids = len(self.clusters)
for ci1, c1 in enumerate(self.clusters):
if ci1 >= num_cids - 1: break
features1 = self.fsets[ci1]
ci2 = ci1 + 1
features2 = self.fsets[ci2]
c2 = self.clusters[ci2]
print '%s vs %s' % (c1.sequence.description, c2.sequence.description)
work = self.Work()
work.start_work(self._blast_feature, c1.CDS, None, c1.sequence, c2.sequence)
work.assemble(self._compose_crosslink, features1, features2)
work.wait()
def draw_clusters(self):
print 'Creating cluster diagram.'
# create diagram
self.diagram = GenomeDiagram.Diagram(self.name)
# add tracks
max_len = max(len(c) for c in self.clusters)
normal_color = colors.grey if self.no_color else colors.black
mark_color = colors.black if self.no_color else colors.red
for cluster in self.clusters:
col = mark_color if cluster.marked else normal_color
track = self.diagram.new_track(1,
name=cluster.label,
greytrack=1, height=0.4,
greytrack_fontcolor=col,
greytrack_labels=1,
greytrack_fontsize=self.name_size,
scale=False,
start=0, end=max_len)
self.fsets.append(track.new_set())
# add crosslink features
if self.add_crosslinks:
self._compose_crosslinks()
# add CDS-es
for ci, cluster in enumerate(self.clusters):
gene_id = 0
for f in cluster.CDS:
known = False
fname = 'NONE'
if gene_id < len(cluster.genes):
fname = cluster.genes[gene_id]
fcolor = self.colors.get(fname, self.default_color)
if fname == 'NONE':
fname = self._feature_name(f, default='')
fcolor = self.default_color
else:
#decapitalize gene names if they are marked as proteins
# fname = fname[:1].lower() + fname[1:] if fname else ''
known = True
if self.no_color: fcolor = colors.color2bw(fcolor)
self.fsets[ci].add_feature(f, sigil="BIGARROW",
color=fcolor,
border=fcolor if self.no_border else colors.black,
name=fname, label=True,
label_position="middle",
label_size=self.gene_size if known else self.unknown_gene_size,
label_color=colors.black if known else colors.grey,
label_angle=self.gene_angle)
gene_id += 1
self.diagram.draw(format="linear", pagesize=self.pagesize, fragments=1,
start=0, end=max_len)
for ptype in ('PDF', 'EPS', 'SVG'):
dianame = '%s.%s' % (self.name, ptype.lower())
print 'Saving: %s' % dianame
self.diagram.write(dianame, ptype)
print 'Done.'
class ConfigSection(object):
"""
Wraps SafeConfigParser with static section handling
:param defaults: dict-like containing default keys/values
:param section: name of section to initially bind to
:note: Not an exact interface reproduction, some functionality
left out!
"""
def __init__(self, defaults, section):
self._section = section
# SafeConfigParser is old-style, and we're changing method parameters
self._scp = SafeConfigParser(defaults)
self._scp.add_section(self._section)
def defaults(self):
"""
Returns dictionary of default options
"""
return self._scp.defaults()
def sections(self):
"""
Returns a list containing this instances section-name
"""
return [self._section]
def add_section(self, section):
"""
Not written, do not use!
:raises NotImplementedError: DO NOT USE!
"""
raise NotImplementedError()
def has_section(self, section):
"""
Returns True if instance-section == ``section``
:param section: Name of section to check.
:returns: True/False if section exists.
"""
return section == self._section
def options(self):
"""
Returns dictionary of all options keys/values
"""
return self._scp.options(self._section)
def has_option(self, option):
"""
Returns True if key-named ``option`` exists
:param option: Name of the option (key) to check.
:returns: True/False if option (key) exists.
"""
return self._scp.has_option(self._section, option)
# Private method doesn't need docstring
def _prune_sections(self): # pylint: disable=C0111
for section in self._scp.sections():
if section != self._section:
self._scp.remove_section(section)
def read(self, filenames):
"""
Replace current contents with content from filename(s)/list
:param filenames: Same as for ``SafeConfigParser.read`` method
:return: List of successfully parsed filenames.
"""
result = self._scp.read(filenames) # Changes self._scp
self._prune_sections()
return result
# Short name 'fp' mirrors use in ConfigParser module
def readfp(self, fp, filename=None): # pylint: disable=C0103
"""
Replace current contents with content from file
:param fp: Same as for ``SafeConfigParser.readfp`` method
:param filename: Same as for ``SafeConfigParser.readfp`` method
:return: Same as for ``SafeConfigParser.readfp`` method
"""
result = self._scp.readfp(fp, filename) # Changes self._scp
self._prune_sections()
return result
def get(self, option):
"""
Return value assigned to key named ``option``
:param option: Name of the ``option`` (key) to check.
:returns: The value assigned to ``option``
"""
return self._scp.get(self._section, option)
def getint(self, option):
"""
Convert/Return value assigned to key named ``option``
:param option: Name of the ``option`` (key) to check.
:return: Value assigned to ``option`` converted to an integer.
"""
return self._scp.getint(self._section, option)
def getfloat(self, option):
"""
Convert/Return value assigned to key named ``option``
:param option: Name of the ``option`` (key) to check.
:return: Value assigned to ``option`` converted to a float.
"""
return self._scp.getfloat(self._section, option)
def getboolean(self, option):
"""
Convert/Return value assigned to key named ``option``
:param option: Name of the ``option`` (key) to check.
:return: ``True``: if value is ``yes``, ``true``. ``False`` if ``no``
or ``false``.
"""
try:
value = self._scp.get(self._section, option).lower().strip()
positives = ("yes", "true")
negatives = ("no", "false")
if value in positives:
return True
if value in negatives:
return False
# try regular way
except AttributeError:
pass # try regular way
return self._scp.getboolean(self._section, option)
def set(self, option, value):
"""
Set value assigned to key named ``option``
:param option: Name of the ``option`` (key) to set.
:param value: Content to assign to ``option``.
:return: Same as for ``SafeConfigParser.set`` method.
"""
return self._scp.set(self._section, option, str(value))
def write(self, fileobject):
"""
Overwrite current contents of ``fileobject.name``
"""
return self._scp.write(open(fileobject.name, "wb"))
def merge_write(self, fileobject):
"""
Update section contents of ``fileobject.name`` by section only.
"""
scp = SafeConfigParser()
# Safe if file doesn't exist
scp.read(fileobject.name)
# N/B: This won't work with DEFAULTS
if not scp.has_section(self._section):
scp.add_section(self._section)
for key, value in self.items():
scp.set(self._section, key, value)
scp.write(open(fileobject.name, "w+b")) # truncates file first
def remove_option(self, option):
"""
Remove option-key ``option``
"""
return self._scp.remove_option(self._section, option)
def remove_section(self):
"""
Not implemented, do not use!
:raises NotImplementedError: DO NOT USE!
"""
raise NotImplementedError()
def items(self):
"""
Return list of ``key``/``value`` tuples for contents
"""
return self._scp.items(self._section)
GITHUB_USERNAME = os.environ['GITHUB_USERNAME']
GITHUB_PASSWORD = os.environ['GITHUB_PASSWORD']
repo_path = sys.argv[1]
region = sys.argv[2]
credential_file = sys.argv[3]
hosts_file = repo_path + '/hosts.ini'
region_setion = str(region) + ':children'
parser = SafeConfigParser(allow_no_value=True)
parser.optionxform = str
parser.read(hosts_file)
file_hosts_dict = {}
for i in parser.items(region_setion):
if 'stateful' not in i[0]:
tenant_name = i[0]
new_tenant_ip_list = []
tenant_ip_list = parser.items(tenant_name)
for j in tenant_ip_list:
new_tenant_ip_list.append(j[0])
file_hosts_dict[tenant_name] = new_tenant_ip_list
new_host_dict = {}
client = boto3.client('ec2',
region_name=region,
aws_access_key_id=ACCESS_KEY,
aws_secret_access_key=SECRET_KEY)
for i in file_hosts_dict.keys():
real_ip_list = []
class Summary:
"""Handles battery summary data"""
def __init__(self):
self.currenttime = time.localtime()
printtime = time.strftime("%Y%m%d%H%M%S ", self.currenttime)
self.logfile = open(config['files']['logfile'], 'a', 0)
self.sampletime = time.time()
self.prevtime = time.localtime()
try:
self.summaryfile = SafeConfigParser()
self.summaryfile.read(config['files']['summaryfile'])
self.summary = {}
for section in self.summaryfile.sections():
self.summary[section] = {}
for key, val in self.summaryfile.items(section):
self.summary[section][key] = literal_eval(val)
# daysummaryfile = open('/media/75cc9171-4331-4f88-ac3f-0278d132fae9/daysummary','r')
# self.daydata = literal_eval(daysummaryfile.read())
# daysummaryfile.close()
except IOError:
pass
# summary = open('/media/75cc9171-4331-4f88-ac3f-0278d132fae9/summary','w')
# pickle.dump(hivolts, summary)
# pickle.dump(lowvolts, summary)
# summary.close()
if self.summary['hour']['timestamp'][0:10] != printtime[0:10]:
self.summary['hour'] = deepcopy(self.summary['current'])
if self.summary['currentday']['timestamp'][0:8] != printtime[0:8]:
self.summary['currentday'] = deepcopy(self.summary['current'])
if self.summary['monthtodate']['timestamp'][0:6] != printtime[0:6]:
self.summary['monthtodate'] = deepcopy(self.summary['current'])
if self.summary['yeartodate']['timestamp'][0:4] != printtime[0:4]:
self.summary['yeartodate'] = deepcopy(self.summary['current'])
def update(self, summary, batdata):
""" Update 'current' section of summary data with 'batdata' and write realtime log """
summary['current']['maxvoltages'][numcells] = round(
batdata.batvoltsav[numcells], 2)
summary['current']['minvoltages'][numcells] = summary['current'][
'maxvoltages'][numcells]
if batdata.batcurrentav > -config['battery']['ilowcurrent']:
summary['current']['maxnocharge'][numcells] = summary['current'][
'maxvoltages'][numcells]
if batdata.batcurrentav < config['battery']['ilowcurrent']:
summary['current']['minnoload'][numcells] = summary['current'][
'minvoltages'][numcells]
summary['current']['ah'][2] = round(batdata.soc, 2)
summary['current']['ah'][0] = summary['current']['ah'][2]
summary['current']['ah'][1] = summary['current']['ah'][2]
summary['current']['ah'][6] = round(batdata.inahtot,
2) # current from solar etc
summary['current']['dod'][2] = round(batdata.socadj, 2)
summary['current']['dod'][0] = summary['current']['dod'][2]
summary['current']['dod'][1] = summary['current']['dod'][2]
summary['current']['amps'][1] = round(batdata.batcurrentav, 1)
summary['current']['amps'][0] = summary['current']['amps'][1]
summary['current']['amps'][2] = round(batdata.incurrentav, 1)
if batdata.ah > 0.0:
summary['current']['ah'][5] = round(batdata.ah, 2)
summary['current']['ah'][4] = 0.0
else:
summary['current']['ah'][4] = round(batdata.ah, 2)
summary['current']['ah'][5] = 0.0
if batdata.pwrbat > 0.0:
summary['current']['power'][1] = round(batdata.pwrbattot, 6)
summary['current']['power'][0] = 0.0
else:
summary['current']['power'][0] = round(batdata.pwrbattot, 6)
summary['current']['power'][1] = 0.0
summary['current']['power'][2] = round(batdata.pwrintot, 6)
summary['current']['power'][3] = round(summary['current']['power'][0] - \
summary['current']['power'][2] + \
summary['current']['power'][1] ,6 ) # current to loads
vprint = ''
maxmaxvoltage = 0.0
minmaxvoltage = 5.0
for i in range(numcells):
summary['current']['maxvoltages'][i] = round(
batdata.deltav[i + 1], 3)
maxmaxvoltage = max(maxmaxvoltage,
summary['current']['maxvoltages'][i])
minmaxvoltage = min(minmaxvoltage,
summary['current']['maxvoltages'][i])
summary['current']['minvoltages'][i] = summary['current'][
'maxvoltages'][i]
if batdata.batcurrentav > -config['battery']['ilowcurrent']:
summary['current']['maxnocharge'][i] = summary['current'][
'maxvoltages'][i]
if batdata.batcurrentav < config['battery']['ilowcurrent']:
summary['current']['minnoload'][i] = summary['current'][
'minvoltages'][i]
vprint = vprint + str(round(batdata.deltav[i + 1], 3)).ljust(
5, '0') + ' '
summary['current']['deltav'][0] = round(maxmaxvoltage - minmaxvoltage,
3)
if batdata.batcurrentav < config['battery']['ilowcurrent']:
summary['current']['deltav'][1] = summary['current']['deltav'][0]
summary['current']['deltav'][2] = summary['current']['deltav'][0]
vprint = vprint + str(round(batdata.batvoltsav[numcells], 2)).ljust(
5, '0') + ' '
vprint = vprint + str(summary['current']['deltav'][0]) + ' '
logdata = vprint + str(round(batdata.batcurrentav,1)) + \
' ' + str(round(batdata.incurrentav,1)) + \
' ' + str(round(batdata.soc,2)).ljust(5,'0') + \
' ' + str(round(batdata.socadj,2)).ljust(5,'0') + '\n' # + '\033[1A'
sys.stdout.write(logdata) # + '\033[1A'
self.prevtime = self.currenttime
self.currenttime = time.localtime()
self.printtime = time.strftime("%Y%m%d%H%M%S ", self.currenttime)
summary['current']['timestamp'] = "'" + self.printtime + "'"
currentdata = self.printtime + logdata
# currentdata = currentdata + ' '
# for i in range(numcells):
# currentdata = currentdata + str(round(batdata.uncalvolts[i+1]-batdata.uncalvolts[i],3)) + ' '
# currentdata = currentdata + '\n'
self.logfile.write(currentdata)
def updatesection(self, summary, section, source):
""" Update 'summary' section 'section' with data from 'source' """
section = summary[section]
source = summary[source]
section['deltav'][1] = max(section['deltav'][1], source['deltav'][1])
section['deltav'][2] = max(section['deltav'][2], source['deltav'][2])
section['deltav'][0] = min(section['deltav'][0], source['deltav'][0])
section['ah'][2] = max(section['ah'][2], source['ah'][2])
section['ah'][0] = min(section['ah'][0], source['ah'][0])
section['ah'][1] = (section['ah'][1] * section['ah'][3] +
source['ah'][1])
section['ah'][4] = round(section['ah'][4] + source['ah'][4], 2)
section['ah'][5] = round(section['ah'][5] + source['ah'][5], 2)
section['ah'][6] = round(section['ah'][6] + source['ah'][6], 2)
section['power'][0] = round(section['power'][0] + source['power'][0],
6)
section['power'][1] = round(section['power'][1] + source['power'][1],
6)
section['power'][2] = round(section['power'][2] + source['power'][2],
6)
section['power'][3] = round(section['power'][3] + source['power'][3],
6)
section['dod'][2] = max(section['dod'][2], source['dod'][2])
section['dod'][0] = min(section['dod'][0], source['dod'][0])
section['dod'][1] = (section['dod'][1] * section['ah'][3] +
source['dod'][1])
section['ah'][3] += 1
section['ah'][1] = round(section['ah'][1] / section['ah'][3], 6)
section['dod'][1] = round(section['dod'][1] / section['ah'][3], 6)
section['dod'][3] = max(section['dod'][3], source['dod'][3])
section['amps'][1] = max(section['amps'][1], source['amps'][1])
section['amps'][0] = min(section['amps'][0], source['amps'][0])
section['amps'][2] = min(section['amps'][2], source['amps'][2])
for i in range(numcells + 1):
section['maxvoltages'][i] = max(section['maxvoltages'][i],
source['maxvoltages'][i])
section['minvoltages'][i] = min(section['minvoltages'][i],
source['minvoltages'][i])
section['maxnocharge'][i] = max(section['maxnocharge'][i],
source['maxnocharge'][i])
section['minnoload'][i] = min(section['minnoload'][i],
source['minnoload'][i])
section['timestamp'] = summary['current']['timestamp']
def writesummary(self):
""" Write summary file """
for section in self.summaryfile.sections():
for option in self.summaryfile.options(section):
self.summaryfile.set(section, option,
str(self.summary[section][option]))
of = open(config['files']['summaryfile'], 'w')
self.summaryfile.write(of)
of.close()
# def writehour(self, data):
# hoursummaryfile=open('/media/75cc9171-4331-4f88-ac3f-0278d132fae9/hoursummary','a')
# hoursummaryfile.write(data)
# hoursummaryfile.close()
# logsummary.set('alltime', 'maxvoltages') = round(max(literal_eval(logsummary.get('currentday','maxvoltages')),literal_eval(logsummary.get(),2)
# logsummary.set('alltime', 'minvoltages') = round(min(literal_eval(logsummary.get('currentday','minvoltages')),batdata.batvoltsav[8]),2)
# logsummary.set('alltime', 'ah') = round(max(literal_eval(logsummary.get('currentday','ah'))[1], batdata.soc/1000),2)
# logsummary.set('alltime', 'ah') = round(min(literal_eval(logsummary.get('currentday','ah'))[0], batdata.soc/1000),2)
# logsummary.set('alltime', 'current') = round(max(literal_eval(logsummary.get('alltime','current'))[1], batdata.batcurrentav/1000),2)
# logsummary.set('alltime', 'current') = round(min(literal_eval(logsummary.get('alltime','current'))[0], batdata.batcurrentav/1000),2)
def writeperiod(self, file, data):
""" Append 'data' to 'file' for previous period """
periodfile = open(config['files'][file], 'a')
writestr = ''
y = self.summaryfile.items(data)
for i in y:
writestr = writestr + str(i) + "\n"
writestr = writestr + "\n"
periodfile.write(writestr)
periodfile.close()
def starthour(self, summary):
""" Start new hour """
self.writeperiod('hoursummaryfile', 'hour')
summary['hour']['ah'][3] = 0 # zero # of samples for av
summary['hour'] = deepcopy(summary['current'])
def startday(self, summary):
""" Start new Day """
self.writeperiod('daysummaryfile', 'currentday')
summary['prevday'] = deepcopy(summary['currentday'])
summary['currentday']['ah'][3] = 0 # zero number of samples for av
summary['current']['dod'][3] += 1
summary['currentday'] = deepcopy(summary['current'])
def startmonth(self, summary):
""" Start new month """
self.writeperiod('monthsummaryfile', 'monthtodate')
summary['monthtodate']['ah'][3] = 0 # zero number of samples for av
summary['monthtodate'] = deepcopy(summary['current'])
filecopy(config['files']['summaryfile'],
config['files']['summaryfile'] + self.printtime[0:8])
def startyear(self, summary):
""" Start new year """
self.writeperiod('yearsummaryfile', 'yeartodate')
summary['yeartodate']['ah'][3] = 0 # zero number of samples for av
summary['yeartodate'] = deepcopy(summary['current'])
self.logfile.close()
rename(config['files']['logfile'],
config['files']['logfile'] + str(int(self.printtime[0:4]) - 1))
self.logfile = open(config['files']['logfile'], 'a')
def close(self):
""" Close logging file ready for exit """
self.logfile.close()
#------- ApprovalProcessorGCN
name = 'approval processor gcn'
tests.append( (name, alert) )
'''
#-------------------------------------------------
### actually test the items
for name, alert in tests:
logger.info("TESTING: %s" % name)
### instantiate the item
item = es.qid[name](alert,
time.time(),
dict(config.items(name)),
gdb,
annotate=opts.annotate,
warnings=opts.warnings,
logDir=opts.logDir,
logTag=opts.logTag)
# raise NotImplementedError('check object internals')
execute(item,
verbose=opts.verbose,
Verbose=opts.Verbose,
cadence=opts.cadence)
# raise NotImplementedError('check object internals')
logger.info("TESTING: %s complete" % name)
print "Running PyFiscalPrinter service."
mainloop.run()
else:
from ConfigParser import SafeConfigParser
DEBUG = '--debug' in sys.argv
# leeo configuración (primer argumento o rece.ini por defecto)
if len(sys.argv)>1 and not sys.argv[1].startswith("--"):
CONFIG_FILE = sys.argv.pop(1)
if DEBUG: print "CONFIG_FILE:", CONFIG_FILE
config = SafeConfigParser()
config.read(CONFIG_FILE)
if config.has_section('CONTROLADOR'):
conf = dict(config.items('CONTROLADOR'))
else:
conf = {}
if '--ayuda' in sys.argv:
print AYUDA
sys.exit(0)
if '--licencia' in sys.argv:
print LICENCIA
sys.exit(0)
controlador = PyFiscalPrinter()
controlador.LanzarExcepciones = True
marca = conf.get("marca", "epson")
# See: https://docs.djangoproject.com/en/dev/ref/settings/#secret-key
# Note: This key only used for development and testing.
SECRET_KEY = secrets.get('secrets', 'SECRET_KEY')
########## END SECRET CONFIGURATION
########## DEBUG CONFIGURATION
# See: https://docs.djangoproject.com/en/dev/ref/settings/#debug
DEBUG = config.getboolean('debug', 'DEBUG')
# See: https://docs.djangoproject.com/en/dev/ref/settings/#template-debug
TEMPLATE_DEBUG = config.getboolean('debug', 'TEMPLATE_DEBUG')
########## END DEBUG CONFIGURATION
########## MANAGER CONFIGURATION
# See: https://docs.djangoproject.com/en/dev/ref/settings/#admins
ADMINS = tuple(config.items('error mail'))
# See: https://docs.djangoproject.com/en/dev/ref/settings/#managers
MANAGERS = tuple(config.items('404 mail'))
########## END MANAGER CONFIGURATION
########## SESSION COOKIE CONFIGURATION
SESSION_COOKIE_DOMAIN = config.get('cookies', 'SESSION_COOKIE_DOMAIN')
########## END SESSION COOKIE CONFIGURATION
########## TEST RUNNER CONFIG
TEST_RUNNER = 'django.test.runner.DiscoverRunner'
########## END TEST RUNNER CONFIG
########## DATABASE CONFIGURATION
DATABASE_USER = config.get('database', 'DATABASE_USER')
def generar_pdf():
CONFIG_FILE = "/home/web2py/pyafipws/sp/rece1.ini"
config = SafeConfigParser()
config.read(CONFIG_FILE)
conf_fact = dict(config.items('FACTURA'))
conf_pdf = dict(config.items('PDF'))
from pyafipws.pyfepdf import FEPDF
fepdf = FEPDF()
# cargo el formato CSV por defecto (factura.csv)
fepdf.CargarFormato(conf_fact.get("formato", "factura.csv"))
# establezco formatos (cantidad de decimales) según configuración:
fepdf.FmtCantidad = conf_fact.get("fmt_cantidad", "0.2")
fepdf.FmtPrecio = conf_fact.get("fmt_precio", "0.2")
# creo una factura de ejemplo
H**O = True
# obtengo el registro general del comprobante (encabezado y totales)
id_comprobante = int(request.args[0])
reg = db(db.comprobante_afip.id==id_comprobante).select().first()
tipo_cbte = reg.tipo_cbte
punto_vta = reg.punto_vta
cbte_nro = reg.cbte_nro
fecha = reg.fecha_cbte #.strftime("%Y%m%d") # formato AAAAMMDD
concepto = reg.concepto
tipo_doc = reg.tipo_doc # 80: CUIT, 96: DNI
nro_doc = reg.nro_doc.replace("-", "") # del cliente, sin rayita
cbt_desde = cbte_nro; cbt_hasta = cbte_nro
imp_total = reg.imp_total
imp_tot_conc = reg.imp_tot_conc
imp_neto = reg.imp_neto
imp_iva = reg.impto_liq
imp_trib = "0.00"
imp_op_ex = reg.imp_op_ex
fecha_cbte = fecha
# Fechas del per�odo del servicio facturado y vencimiento de pago:
if concepto > 1:
fecha_venc_pago = reg.fecha_venc_pago
fecha_serv_desde = reg.fecha_serv_desde
fecha_serv_hasta = reg.fecha_serv_desde
else:
fecha_venc_pago = fecha_serv_desde = fecha_serv_hasta = None
moneda_id = reg.moneda_id
moneda_ctz = reg.moneda_ctz
# datos generales del encabezado:
incoterms = 'FOB' # solo exportación
idioma_cbte = 1 # 1: es, 2: en, 3: pt
# datos adicionales del encabezado:
nombre_cliente = reg.nombre_cliente
domicilio_cliente = reg.domicilio_cliente
pais_dst_cmp = 212 # 200: Argentina, ver tabla
id_impositivo = reg.id_impositivo # cat. iva (mercado interno)
forma_pago = reg.forma_pago
obs_generales = reg.obs
obs_comerciales = reg.obs_comerciales
# datos devueltos por el webservice (WSFEv1, WSMTXCA, etc.):
motivo_obs = "Factura individual, DocTipo: 80, DocNro 30000000007 no se encuentra registrado en los padrones de AFIP."
cae = reg.cae
fch_venc_cae = reg.fecha_vto
fepdf.CrearFactura(concepto, tipo_doc, nro_doc, tipo_cbte, punto_vta,
cbte_nro, imp_total, imp_tot_conc, imp_neto,
imp_iva, imp_trib, imp_op_ex, fecha_cbte, fecha_venc_pago,
fecha_serv_desde, fecha_serv_hasta,
moneda_id, moneda_ctz, cae, fch_venc_cae, id_impositivo,
nombre_cliente, domicilio_cliente, pais_dst_cmp,
obs_comerciales, obs_generales, forma_pago, incoterms,
idioma_cbte, motivo_obs)
# completo campos extra del encabezado:
ok = fepdf.EstablecerParametro("localidad_cliente", "Hurlingham")
ok = fepdf.EstablecerParametro("provincia_cliente", "Buenos Aires")
# imprimir leyenda "Comprobante Autorizado" (constatar con WSCDC!)
ok = fepdf.EstablecerParametro("resultado", "A")
# tributos adicionales:
tributo_id = 99
desc = 'Impuesto Municipal Matanza'
base_imp = "100.00"
alic = "1.00"
importe = "1.00"
fepdf.AgregarTributo(tributo_id, desc, base_imp, alic, importe)
tributo_id = 4
desc = 'Impuestos Internos'
base_imp = None
alic = None
importe = "0.00"
fepdf.AgregarTributo(tributo_id, desc, base_imp, alic, importe)
# subtotales por alícuota de IVA:
iva_id = 5 # 21%
base_imp = 100
importe = 21
fepdf.AgregarIva(iva_id, base_imp, importe)
# detalle de artículos:
registros = db(db.detalle_afip.comprobante_id==id_comprobante).select()
for registro in registros:
u_mtx = 123456
cod_mtx = 1234567890123
codigo = registro.codigo
ds = registro.ds
qty = registro.qty
umed = 7
precio = registro.precio
imp_iva = registro.imp_iva
bonif = 0.00
iva_id = registro.iva_id
importe = registro.imp_total
despacho = u''
dato_a = ""
fepdf.AgregarDetalleItem(u_mtx, cod_mtx, codigo, ds, qty, umed,
precio, bonif, iva_id, imp_iva, importe, despacho, dato_a)
# descuento general (a tasa 21%):
u_mtx = cod_mtx = codigo = None
ds = u"Bonificación/Descuento 10%"
qty = precio = bonif = None
umed = 99
iva_id = 5
if tipo_cbte in (1, 2, 3, 4, 5, 34, 39, 51, 52, 53, 54, 60, 64):
# discriminar IVA si es clase A / M
imp_iva = -2.21
else:
imp_iva = None
importe = -12.10
fepdf.AgregarDetalleItem(u_mtx, cod_mtx, codigo, ds, qty, umed,
precio, bonif, iva_id, imp_iva, importe, "")
# descripción (sin importes ni cantidad):
u_mtx = cod_mtx = codigo = None
qty = precio = bonif = iva_id = imp_iva = importe = None
umed = 0
ds = u"Descripción Ejemplo"
fepdf.AgregarDetalleItem(u_mtx, cod_mtx, codigo, ds, qty, umed,
precio, bonif, iva_id, imp_iva, importe, "")
# completo campos personalizados de la plantilla:
fepdf.AgregarDato("custom-nro-cli", "Cod.123")
fepdf.AgregarDato("custom-pedido", "1234")
fepdf.AgregarDato("custom-remito", "12345")
fepdf.AgregarDato("custom-transporte", "Camiones Ej.")
# datos fijos:
for k, v in conf_pdf.items():
fepdf.AgregarDato(k, v)
if k.upper() == 'CUIT':
fepdf.CUIT = v # CUIT del emisor para código de barras
fepdf.CrearPlantilla(papel=conf_fact.get("papel", "legal"),
orientacion=conf_fact.get("orientacion", "portrait"))
fepdf.ProcesarPlantilla(num_copias=int(conf_fact.get("copias", 1)),
lineas_max=int(conf_fact.get("lineas_max", 24)),
qty_pos=conf_fact.get("cant_pos") or 'izq')
salida = "/tmp/factura.pdf"
fepdf.GenerarPDF(archivo=salida)
fepdf.MostrarPDF(archivo=salida,imprimir=False)
response.headers['Content-Type'] = "application/pdf"
return open(salida, "rb")
driverClass = createDriverClass(args['system'])
assert driverClass != None, "Failed to find '%s' class" % args['system']
driver = driverClass(args['ddl'])
assert driver != None, "Failed to create '%s' driver" % args['system']
if args['print_config']:
config = driver.makeDefaultConfig()
print driver.formatConfig(config)
print
sys.exit(0)
## Load Configuration file
if args['config']:
logging.debug("Loading configuration file '%s'" % args['config'])
cparser = SafeConfigParser()
cparser.read(os.path.realpath(args['config'].name))
config = dict(cparser.items(args['system']))
else:
logging.debug("Using default configuration for %s" % args['system'])
defaultConfig = driver.makeDefaultConfig()
config = dict(
map(lambda x: (x, defaultConfig[x][1]), defaultConfig.keys()))
config['reset'] = args['reset']
config['load'] = False
config['execute'] = False
if config['reset']: logging.info("Reseting database")
driver.loadConfig(config)
logging.info("Initializing TPC-C benchmark using %s" % driver)
## Create ScaleParameters
scaleParameters = scaleparameters.makeWithScaleFactor(
args['warehouses'], args['scalefactor'])
def main():
'''
Tool for writing the SFP Data Base and Init script of a WR Device (with WRCORE)
'''
sfp_db = {}
sfp_db['wr0-blue'] = []
sfp_db['wr1-blue'] = []
sfp_db['wr0-violet'] = []
sfp_db['wr1-violet'] = []
SFP_BLUE = "sfp add AXGE-1254-0531"
SFP_VIOLET = "sfp add AXGE-3454-0531"
parser = arg.ArgumentParser(description='EEPROM writing tool for WRCORE')
parser.add_argument('--bus','-b',help='Bus',choices=['ethbone','serial'], \
required=True)
parser.add_argument('--lun',
'-l',
help='Logical Unit (IP/Serial Port)',
type=str,
required=True)
parser.add_argument('--input',
'-i',
help='Input .ini file',
type=str,
required=True)
parser.add_argument('--debug','-d',help='Enable debug output',action="store_true", \
default=False)
args = parser.parse_args()
if args.bus == 'ethbone':
uart = VUART_bridge('eth', args.lun, args.debug)
else:
uart = SerialBridge(port="/dev/ttyUSB%s" % args.lun,
verbose=args.debug)
# Hack for new releases of WRC-2P
uart.open(interchartimeout=0.01)
parser = SafeConfigParser()
ret = parser.read(args.input)
if ret == []:
print("%s could not be opened" % (args.input))
# Write the delays for the SFP ports
if "ports" in parser.sections():
print("Writing the port calibration values...")
uart.sendCommand("sfp erase")
time.sleep(0.5) # For serial
# Every readen port is a combination of (SFP-SN@PORT,(tx,rx,alpha))
for port in parser.items("ports"):
sfpsn, p = port[0].split('@')
sfpsn = sfpsn.upper() # The parser reads the chars in lowercase
dtx, drx, alpha = port[1].split(',')
cmd = "sfp add %s %s %s %s %s" % (sfpsn, p, dtx, drx, alpha)
uart.sendCommand(cmd)
time.sleep(0.5) # For serial
# Write the init script
if "init" in parser.sections():
print("Writing init script...")
uart.sendCommand("init erase")
for item in parser.items("init"):
time.sleep(0.5) # For serial
uart.sendCommand("init add %s" % item[1])
print("Configuration writed")
if config.has_option('WSAA','URL') and not H**O:
WSAA_URL = config.get('WSAA','URL')
else:
WSAA_URL = None #wsaa.WSAAURL
if config.has_option('WSLTV','URL') and not H**O:
WSLTV_URL = config.get('WSLTV','URL')
else:
WSLTV_URL = WSDL
PROXY = config.has_option('WSAA', 'PROXY') and config.get('WSAA', 'PROXY') or None
CACERT = config.has_option('WSAA', 'CACERT') and config.get('WSAA', 'CACERT') or None
WRAPPER = config.has_option('WSAA', 'WRAPPER') and config.get('WSAA', 'WRAPPER') or None
if config.has_section('DBF'):
conf_dbf = dict(config.items('DBF'))
if DEBUG: print "conf_dbf", conf_dbf
else:
conf_dbf = {}
DEBUG = '--debug' in sys.argv
XML = '--xml' in sys.argv
if DEBUG:
print "Usando Configuración:"
print "WSAA_URL:", WSAA_URL
print "WSLTV_URL:", WSLTV_URL
print "CACERT", CACERT
print "WRAPPER", WRAPPER
# obteniendo el TA
from wsaa import WSAA
class Config(object):
def __init__(self, *paths):
self.parser = SafeConfigParser()
# read the configuration, and store the list of
# config files which were successfully parsed
self.sources = self.parser.read(paths)
self.raw_data = {}
self.normalized_data = {}
self.data = {}
# first pass: read in the raw data. it's all strings, since
# ConfigParser doesn't seem to decode unicode correctly (yet)
for sn in self.parser.sections():
items = self.parser.items(sn)
self.raw_data[sn] = dict(items)
# second pass: cast the values into int or bool where possible
# (mostly to avoid storing "false", which evaluates to True)
for sn in self.raw_data.keys():
self.normalized_data[sn] = {}
for key, val in self.raw_data[sn].items():
self.normalized_data[sn][key] = \
self.__normalize_value(val)
# third pass: iterate the normalized data, creating a
# dict (self.data) containing the "real" configuration,
# which may include things (magic, defaults, etc) not
# present in the raw_data or normalized_data
for sn in self.normalized_data.keys():
section_parser = "parse_%s_section" % (sn)
# if this section has a special parser, call
# it with the raw data, and store the result
if hasattr(self, section_parser):
self.data[sn] = \
getattr(self, section_parser)(
self.normalized_data[sn])
# no custom section parser, so
# just copy the raw data as-is
else:
self.data[sn] =\
self.normalized_data[sn].copy()
def __normalize_value(self, value):
"""Casts a string to a bool, int, or float, if it looks like it
should be one. This is a band-aid over the ini format, which
assumes all values to be strings. Examples:
"mudkips" => "mudkips" (str)
"false", "FALSE", "no" => False (bool)
"true", "TRUE", "yes" => True (bool)
"1.0", "0001.00" => 1.0 (float)
"0", "0000" => 0 (int)"""
# shortcut for string boolean values
if value.lower() in ["false", "no"]: return False
elif value.lower() in ["true", "yes"]: return True
# attempt to cast this value to an int, then a float. (a sloppy
# benchmark of this exception-catching algorithm indicates that
# it's faster than checking with a regexp)
for func in [int, float]:
try:
func(value)
except:
pass
# it's just a str
# (NOT A UNICODE)
return value
def __import_class(self, class_tmpl):
"""Given a full class name (ie, webapp.app.App), returns the
class object. There doesn't seem to be a built-in way of doing
this without mucking with __import__."""
# break the class name off the end of module template
# i.e. "ABCD.app.App" -> ("ABC.app", "App")
try:
split_module = class_tmpl.rsplit(".", 1)
module = __import__(split_module[0], {}, {}, split_module[1:])
#module = __import__(class_tmpl, {}, {}, [])
# import the requested class or None
if len(split_module) > 1 and hasattr(module, split_module[-1]):
return getattr(module, split_module[-1])
else:
return module
except ImportError, e:
logging.error("App import error: " + str(e))
pass
from ConfigParser import SafeConfigParser
import os
import json
import re
PLUGIN_DIR = '../lib/ar_server/plugins/'
OUT_JSON = 'ar_modules.json'
plugin_configs = [p for p in os.listdir(PLUGIN_DIR) if re.search('yapsy', p)]
plugins_data = []
for plugin_config in plugin_configs:
pfile = os.path.join(PLUGIN_DIR, plugin_config)
parser = SafeConfigParser()
parser.read(pfile)
pd = dict(
dict(parser.items('Core')).items() +
dict(parser.items('Settings')).items() +
dict({
'parameters': dict(parser.items('Parameters')).items()
}).items() + dict(parser.items('Documentation')).items())
plugins_data.append(pd)
with open(OUT_JSON, 'w') as outfile:
json.dump(plugins_data, outfile)
help=
"Pattern from which output file is created by interpolation with variable values."
)
ns = parse(add_arguments, args=sys.argv[1:i])
prog = sys.argv[i]
args = sys.argv[i + 1:]
argvars = VarArgGenerator()
if ns.var_file:
config = SafeConfigParser()
config.read(ns.var_file)
if config.has_section('constants'):
argvars.update(config.items('constants'))
if config.has_section['variables']:
argvars.update(
dict(parse_vars(m) for m in config.items('variables')))
if ns.var:
argvars.update(ns.var)
if ns.glob:
for name, globstr in ns.glob.iteritems():
argvars.variables[name] = glob(globstr)
argvars.add_oper(name, "{0}_base".format(name),
lambda x: os.path.basename(x))
argvars.add_oper(name, "{0}_noext".format(name),
lambda x: os.path.splitext(x)[0])
class Session(object):
"""Configuration session.
Encapsulates all configuration for a given test run.
.. attribute :: argparse
An instance of :class:`argparse.ArgumentParser`. Plugins can
use this directly to add arguments and argument groups, but
*must* do so in their ``__init__`` methods.
.. attribute :: pluginargs
The argparse argument group in which plugins (by default) place
their command-line arguments. Plugins can use this directly to
add arguments, but *must* do so in their ``__init__`` methods.
.. attribute :: hooks
The :class:`nose2.events.PluginInterface` instance contains
all available plugin methods and hooks.
.. attribute :: plugins
The list of loaded -- but not necessarily *active* -- plugins.
.. attribute :: verbosity
Current verbosity level. Default: 1.
.. attribute :: startDir
Start directory of test run. Test discovery starts
here. Default: current working directory.
.. attribute :: topLevelDir
Top-level directory of test run. This directory is added to
sys.path. Default: starting directory.
.. attribute :: libDirs
Names of code directories, relative to starting
directory. Default: ['lib', 'src']. These directories are added
to sys.path and discovery if the exist.
.. attribute :: testFilePattern
Pattern used to discover test module files. Default: test*.py
.. attribute :: testMethodPrefix
Prefix used to discover test methods and functions: Default: 'test'.
.. attribute :: unittest
The config section for nose2 itself.
"""
configClass = config.Config
def __init__(self):
self.argparse = argparse.ArgumentParser(prog="nose2", add_help=False)
self.pluginargs = self.argparse.add_argument_group(
"plugin arguments", "Command-line arguments added by plugins:"
)
self.config = ConfigParser()
self.hooks = events.PluginInterface()
self.plugins = []
# this will be reset later, whenever handleCfgArgs happens, but it
# starts at 1 so that it always has a non-negative integer value
self.verbosity = 1
self.startDir = None
self.topLevelDir = None
self.testResult = None
self.testLoader = None
self.logLevel = logging.WARN
self.configCache = dict()
def get(self, section):
"""Get a config section.
:param section: The section name to retreive.
:returns: instance of self.configClass.
"""
# If section exists in cache, return cached version
if section in self.configCache:
return self.configCache[section]
# If section doesn't exist in cache, parse config file
# (and cache result)
items = []
if self.config.has_section(section):
items = self.config.items(section)
self.configCache[section] = self.configClass(items)
return self.configCache[section]
def loadConfigFiles(self, *filenames):
"""Load config files.
:param filenames: Names of config files to load.
Loads all names files that exist into ``self.config``.
"""
self.config.read(filenames)
def loadPlugins(self, modules=None, exclude=None):
"""Load plugins.
:param modules: List of module names from which to load plugins.
"""
# plugins set directly
if modules is None:
modules = []
if exclude is None:
exclude = []
# plugins mentioned in config file(s)
cfg = self.unittest
more_plugins = cfg.as_list("plugins", [])
cfg_exclude = cfg.as_list("exclude-plugins", [])
exclude.extend(cfg_exclude)
exclude = set(exclude)
all_ = (set(modules) | set(more_plugins)) - exclude
all_ = sorted(all_)
log.debug("Loading plugin modules: %s", all_)
for module in all_:
self.loadPluginsFromModule(util.module_from_name(module))
self.hooks.pluginsLoaded(events.PluginsLoadedEvent(self.plugins))
def loadPluginsFromModule(self, module):
"""Load plugins from a module.
:param module: A python module containing zero or more plugin
classes.
"""
avail = []
for entry in dir(module):
try:
item = getattr(module, entry)
except AttributeError:
pass
try:
if issubclass(item, events.Plugin) and not item == events.Plugin:
avail.append(item)
except TypeError:
pass
for cls in avail:
log.debug("Plugin is available: %s", cls)
plugin = cls(session=self)
if plugin not in self.plugins:
self.plugins.append(plugin)
for method in self.hooks.preRegistrationMethods:
if hasattr(plugin, method):
self.hooks.register(method, plugin)
def registerPlugin(self, plugin):
"""Register a plugin.
:param plugin: A `nose2.events.Plugin` instance.
Register the plugin with all methods it implements.
"""
log.debug("Register active plugin %s", plugin)
if plugin not in self.plugins:
self.plugins.append(plugin)
for method in self.hooks.methods:
if hasattr(plugin, method):
log.debug("Register method %s for plugin %s", method, plugin)
self.hooks.register(method, plugin)
def setVerbosity(self, args_verbosity, args_verbose, args_quiet):
"""
Determine verbosity from various (possibly conflicting) sources of info
:param args_verbosity: The --verbosity argument value
:param args_verbose: count of -v options
:param args_quiet: count of -q options
start with config, override with any given --verbosity, then adjust
up/down with -vvv -qq, etc
"""
self.verbosity = self.unittest.as_int("verbosity", 1)
if args_verbosity is not None:
self.verbosity = args_verbosity
# adjust up or down, depending on the difference of these counts
self.verbosity += args_verbose - args_quiet
# floor the value at 0 -- verbosity is always a non-negative integer
self.verbosity = max(self.verbosity, 0)
def setStartDir(self, args_start_dir=None):
"""
start dir comes from config and may be overridden by an argument
"""
self.startDir = self.unittest.as_str("start-dir", ".")
if args_start_dir is not None:
self.startDir = args_start_dir
def prepareSysPath(self):
"""Add code directories to sys.path"""
tld = self.topLevelDir
sd = self.startDir
if tld is None:
tld = sd
tld = os.path.abspath(tld)
util.ensure_importable(tld)
for libdir in self.libDirs:
libdir = os.path.abspath(os.path.join(tld, libdir))
if os.path.exists(libdir):
util.ensure_importable(libdir)
# convenience properties
@property
def libDirs(self):
return self.unittest.as_list("code-directories", ["lib", "src"])
@property
def testFilePattern(self):
return self.unittest.as_str("test-file-pattern", "test*.py")
@property
def testMethodPrefix(self):
return self.unittest.as_str("test-method-prefix", "test")
@property
def unittest(self):
return self.get("unittest")
def isPluginLoaded(self, pluginName):
"""Returns ``True`` if a given plugin is loaded.
:param pluginName: the name of the plugin module:
e.g. "nose2.plugins.layers".
"""
for plugin in self.plugins:
if pluginName == plugin.__class__.__module__:
return True
return False
cur.SAMObject.store(observed=cur.Y,
inputs=cur.X,
Q=Q,
kernel=kernel,
num_inducing=model_num_inducing)
SAMCore.load_pruned_model(fname, economy_save, cur.SAMObject.model)
mm.append(cur)
#open ports
yarp.Network.init()
sect = splitPath[0].split('/')[-1].lower()
parser2 = SafeConfigParser()
parser2.read(interactionConfPath)
portNameList = parser2.items(sect)
print portNameList
portsList = []
for j in range(len(portNameList)):
if (portNameList[j][0] == 'rpcbase'):
portsList.append(yarp.RpcServer())
portsList[j].open(portNameList[j][1] + ':i')
svPort = j
elif (portNameList[j][0] == 'callsign'):
callSignList = portNameList[j][1].split(',')
else:
parts = portNameList[j][1].split(' ')
print parts
if (parts[1].lower() == 'imagergb'):
portsList.append(yarp.BufferedPortImageRgb())
def __init__(self, fp):
self.fp = fp
self.sechead = '[all]\n'
def readline(self):
if self.sechead:
try: return self.sechead
finally: self.sechead = None
else:
s = self.fp.readline()
if s.find('#') != -1:
s = s[0:s.find('#')].strip() +"\n"
return s
config_parser = SafeConfigParser()
config_parser.readfp(FakeSecHead(open(os.path.join(dbdir, "unbreakablecoin.conf"))))
return dict(config_parser.items("all"))
def connect_JSON(config):
"""Connect to a bitcoin JSON-RPC server"""
testnet = config.get('testnet', '0')
testnet = (int(testnet) > 0) # 0/1 in config file, convert to True/False
if not 'rpcport' in config:
config['rpcport'] = 19335 if testnet else 9335
connect = "http://%s:%[email protected]:%s"%(config['rpcuser'], config['rpcpassword'], config['rpcport'])
try:
result = ServiceProxy(connect)
# ServiceProxy is lazy-connect, so send an RPC command mostly to catch connection errors,
# but also make sure the unbreakablecoind we're talking to is/isn't testnet:
if result.getmininginfo()['testnet'] != testnet:
sys.stderr.write("RPC server at "+connect+" testnet setting mismatch\n")
sys.exit(1)
from ConfigParser import SafeConfigParser
import sys
config_dir = './config.ini'
config = SafeConfigParser()
config.read(config_dir)
# All options must be set as strings.
config.add_section('tmp_section')
config.set('tmp_section', 'name', 'wujimaster')
config.set('tmp_section', 'job', 'devops')
for section in config.sections():
print(section)
for name, value in config.items(section):
print(' %s = %r' % (name, value))
