def preProcess( self, _oedObject = None ):
EDPluginSTACv10.preProcess( self )
self.DEBUG( "EDPluginSTACalignmentv01.preProcess")
#bestfile.par
EDUtilsFile.writeFile( EDDiskExplorer.mergePath( self.getWorkingDirectory(), "bestfile.par" ), self.m_xsDataInput.getBestFileContentPar().getValue())
#self.writeAlignmentRequest() - for now use a predefined request
EDUtilsFile.writeFile( EDDiskExplorer.mergePath( self.getWorkingDirectory(), "DNA_kappa_alignment_request" ), "<?xml version=\"1.0\" encoding=\"ISO-8859-1\"?><kappa_alignment_request><desired_orientation><v1>a*</v1><v2>b*</v2><close>false</close><comment></comment></desired_orientation><desired_orientation><v1>a*</v1><v2>c*</v2><close>false</close><comment></comment></desired_orientation><desired_orientation><v1>b*</v1><v2>a*</v2><close>false</close><comment></comment></desired_orientation><desired_orientation><v1>b*</v1><v2>c*</v2><close>false</close><comment></comment></desired_orientation><desired_orientation><v1>c*</v1><v2>a*</v2><close>true</close><comment></comment></desired_orientation><desired_orientation><v1>c*</v1><v2>b*</v2><close>false</close><comment></comment></desired_orientation><comment>First test parameter passed</comment></kappa_alignment_request>")
#self.writeKappaSettings() - for now use a predefined datum (0;0;0)
EDUtilsFile.writeFile( EDDiskExplorer.mergePath( self.getWorkingDirectory(), "DNA_STAC_Kappa_Settings" ), "<?xml version=\"1.0\" encoding=\"ISO-8859-1\"?><kappa_collect_settings><motorSettings><motorName>Omega</motorName><motorValue>0</motorValue></motorSettings><motorSettings><motorName>Kappa</motorName><motorValue>0.000000</motorValue></motorSettings><motorSettings><motorName>Phi</motorName><motorValue>0</motorValue></motorSettings><motorSettings><motorName>X</motorName><motorValue>0.261444</motorValue></motorSettings><motorSettings><motorName>Y</motorName><motorValue>-0.085559</motorValue></motorSettings><motorSettings><motorName>Z</motorName><motorValue>0.659333</motorValue></motorSettings><comment>BCM query performed by STAC</comment></kappa_collect_settings>")
def preProcess( self, _oedObject = None ):
EDPluginSTACv10.preProcess( self )
self.DEBUG( "EDPluginSTACalignmentv01.preProcess")
#bestfile.par
EDUtilsFile.writeFile( EDDiskExplorer.mergePath( self.getWorkingDirectory(), "bestfile.par" ), self.m_oxsDataBestFileContentPar.getValue())
#self.writeStrategyRequest()
EDUtilsFile.writeFile( EDDiskExplorer.mergePath( self.getWorkingDirectory(), "DNA_kappa_strategy_request" ), self.m_xsDataInput.marshal() )
#self.writeKappaSettings() - for now use a predefined datum (0;0;0)
EDUtilsFile.writeFile( EDDiskExplorer.mergePath( self.getWorkingDirectory(), "DNA_STAC_Kappa_Settings" ), "<?xml version=\"1.0\" encoding=\"ISO-8859-1\"?><kappa_collect_settings><motorSettings><motorName>Omega</motorName><motorValue>0</motorValue></motorSettings><motorSettings><motorName>Kappa</motorName><motorValue>0.000000</motorValue></motorSettings><motorSettings><motorName>Phi</motorName><motorValue>0</motorValue></motorSettings><motorSettings><motorName>X</motorName><motorValue>0.261444</motorValue></motorSettings><motorSettings><motorName>Y</motorName><motorValue>-0.085559</motorValue></motorSettings><motorSettings><motorName>Z</motorName><motorValue>0.659333</motorValue></motorSettings><comment>BCM query performed by STAC</comment></kappa_collect_settings>")
def preProcess(self, _oedObject=None):
EDPluginSTACv10.preProcess(self)
self.DEBUG("EDPluginSTACalignmentv01.preProcess")
#bestfile.par
EDUtilsFile.writeFile(
EDDiskExplorer.mergePath(self.getWorkingDirectory(),
"bestfile.par"),
self.m_oxsDataBestFileContentPar.getValue())
#self.writeStrategyRequest()
EDUtilsFile.writeFile(
EDDiskExplorer.mergePath(self.getWorkingDirectory(),
"DNA_kappa_strategy_request"),
self.m_xsDataInput.marshal())
#self.writeKappaSettings() - for now use a predefined datum (0;0;0)
EDUtilsFile.writeFile(
EDDiskExplorer.mergePath(self.getWorkingDirectory(),
"DNA_STAC_Kappa_Settings"),
"<?xml version=\"1.0\" encoding=\"ISO-8859-1\"?><kappa_collect_settings><motorSettings><motorName>Omega</motorName><motorValue>0</motorValue></motorSettings><motorSettings><motorName>Kappa</motorName><motorValue>0.000000</motorValue></motorSettings><motorSettings><motorName>Phi</motorName><motorValue>0</motorValue></motorSettings><motorSettings><motorName>X</motorName><motorValue>0.261444</motorValue></motorSettings><motorSettings><motorName>Y</motorName><motorValue>-0.085559</motorValue></motorSettings><motorSettings><motorName>Z</motorName><motorValue>0.659333</motorValue></motorSettings><comment>BCM query performed by STAC</comment></kappa_collect_settings>"
)
def preProcess(self, _oedObject=None):
EDPluginSTACv10.preProcess(self)
self.DEBUG("EDPluginSTACalignmentv01.preProcess")
#bestfile.par
EDUtilsFile.writeFile(
EDDiskExplorer.mergePath(self.getWorkingDirectory(),
"bestfile.par"),
self.m_xsDataInput.getBestFileContentPar().getValue())
#self.writeAlignmentRequest() - for now use a predefined request
EDUtilsFile.writeFile(
EDDiskExplorer.mergePath(self.getWorkingDirectory(),
"DNA_kappa_alignment_request"),
"<?xml version=\"1.0\" encoding=\"ISO-8859-1\"?><kappa_alignment_request><desired_orientation><v1>a*</v1><v2>b*</v2><close>false</close><comment></comment></desired_orientation><desired_orientation><v1>a*</v1><v2>c*</v2><close>false</close><comment></comment></desired_orientation><desired_orientation><v1>b*</v1><v2>a*</v2><close>false</close><comment></comment></desired_orientation><desired_orientation><v1>b*</v1><v2>c*</v2><close>false</close><comment></comment></desired_orientation><desired_orientation><v1>c*</v1><v2>a*</v2><close>true</close><comment></comment></desired_orientation><desired_orientation><v1>c*</v1><v2>b*</v2><close>false</close><comment></comment></desired_orientation><comment>First test parameter passed</comment></kappa_alignment_request>"
)
#self.writeKappaSettings() - for now use a predefined datum (0;0;0)
EDUtilsFile.writeFile(
EDDiskExplorer.mergePath(self.getWorkingDirectory(),
"DNA_STAC_Kappa_Settings"),
"<?xml version=\"1.0\" encoding=\"ISO-8859-1\"?><kappa_collect_settings><motorSettings><motorName>Omega</motorName><motorValue>0</motorValue></motorSettings><motorSettings><motorName>Kappa</motorName><motorValue>0.000000</motorValue></motorSettings><motorSettings><motorName>Phi</motorName><motorValue>0</motorValue></motorSettings><motorSettings><motorName>X</motorName><motorValue>0.261444</motorValue></motorSettings><motorSettings><motorName>Y</motorName><motorValue>-0.085559</motorValue></motorSettings><motorSettings><motorName>Z</motorName><motorValue>0.659333</motorValue></motorSettings><comment>BCM query performed by STAC</comment></kappa_collect_settings>"
)
