def __init__(self, _edStringTestName=None):
EDTestCasePluginExecuteControlCharacterisationv1_3.__init__(self, "EDTestCasePluginExecuteControlCharacterisationv1_3_bestBFactorFailed")
self.setConfigurationFile(self.getRefConfigFile())
self.setDataInputFile(os.path.join(self.getPluginTestsDataHome(), "XSDataInputCharacterisation_bestBFactorFailed.xml"))
self.setNoExpectedWarningMessages(0)
self.setNoExpectedErrorMessages(1)
self.setAcceptPluginFailure(True)
def __init__(self, _edStringTestName=None):
EDTestCasePluginExecuteControlCharacterisationv1_3.__init__(self, "EDTestCasePluginExecuteControlCharacterisationv1_3_fewSpots")
self.setConfigurationFile(self.getRefConfigFile())
self.setDataInputFile(os.path.join(self.getPluginTestsDataHome(), "XSDataInputCharacterisation_fewSpots.xml"))
self.setNoExpectedWarningMessages(0)
self.setNoExpectedErrorMessages(1)
self.setAcceptPluginFailure(True)
def testExecute(self):
EDTestCasePluginExecuteControlCharacterisationv1_3.testExecute(self)
edPlugin = self.getPlugin()
strStatusMessage = None
if edPlugin.hasDataOutput("statusMessage"):
strStatusMessage = edPlugin.getDataOutput("statusMessage")[0].getValue()
EDAssert.equal(True, strStatusMessage.find("Indexing FAILURE") != -1, "Status message contains 'Indexing FAILURE'")
def testExecute(self):
EDTestCasePluginExecuteControlCharacterisationv1_3.testExecute(self)
edPlugin = self.getPlugin()
strStatusMessage = None
if edPlugin.hasDataOutput("statusMessage"):
strStatusMessage = edPlugin.getDataOutput("statusMessage")[0].getValue()
EDAssert.equal(True, strStatusMessage.find("Strategy calculation FAILURE") != -1, "Status message contains 'Strategy calculation FAILURE'")
def __init__(self, _edStringTestName=None):
EDTestCasePluginExecuteControlCharacterisationv1_3.__init__(
self,
"EDTestCasePluginExecuteControlCharacterisationv1_3_iceRings")
self.setConfigurationFile(self.getRefConfigFile())
self.setDataInputFile(
os.path.join(self.getPluginTestsDataHome(),
"XSDataInputCharacterisation_iceRings.xml"))
self.setNoExpectedWarningMessages(2)
def testExecute(self):
EDTestCasePluginExecuteControlCharacterisationv1_3.testExecute(self)
edPlugin = self.getPlugin()
xsDataCharacterisation = edPlugin.getDataOutput()
xsDataResultIndexing = xsDataCharacterisation.getIndexingResult()
xsDataSelectedSolution = xsDataResultIndexing.getSelectedSolution()
xsDataCrystal = xsDataSelectedSolution.getCrystal()
xsDataSpaceGroup = xsDataCrystal.getSpaceGroup()
strSpaceGroupName = xsDataSpaceGroup.getName().getValue()
EDAssert.equal("P1", strSpaceGroupName, "Selected indexing solution is P1")
def testExecute(self):
EDTestCasePluginExecuteControlCharacterisationv1_3.testExecute(self)
edPlugin = self.getPlugin()
xsDataCharacterisation = edPlugin.getDataOutput()
xsDataResultIndexing = xsDataCharacterisation.getIndexingResult()
xsDataSelectedSolution = xsDataResultIndexing.getSelectedSolution()
xsDataCrystal = xsDataSelectedSolution.getCrystal()
xsDataSpaceGroup = xsDataCrystal.getSpaceGroup()
strSpaceGroupName = xsDataSpaceGroup.getName().getValue()
EDAssert.equal("P1", strSpaceGroupName,
"Selected indexing solution is P1")
def testExecute(self):
EDTestCasePluginExecuteControlCharacterisationv1_3.testExecute(self)
edPlugin = self.getPlugin()
strStatusMessage = None
if edPlugin.hasDataOutput("statusMessage"):
strStatusMessage = edPlugin.getDataOutput(
"statusMessage")[0].getValue()
EDAssert.equal(True,
strStatusMessage.find("Indexing FAILURE") != -1,
"Status message contains 'Indexing FAILURE'")
edPlugin.generateExecutiveSummary(edPlugin)
edPlugin.verboseScreenExecutiveSummary()
def testExecute(self):
EDTestCasePluginExecuteControlCharacterisationv1_3.testExecute(self)
plugin = self.getPlugin()
xsDataCharacterisation = plugin.getDataOutput()
xsDataCollectionPlanList = xsDataCharacterisation.getStrategyResult().getCollectionPlan()
EDAssert.equal(2, len(xsDataCollectionPlanList))
strRankingResolutionInitial = xsDataCollectionPlanList[1].getStrategySummary().getResolutionReasoning().getValue()
EDAssert.equal("Resolution limit is set by the initial image resolution", strRankingResolutionInitial)
#Ric: to avoid error:
strRankingResolutionLow = xsDataCollectionPlanList[0].getStrategySummary().getResolutionReasoning().getValue()
if (plugin.getPluginStrategyName == "EDPluginControlStrategyv1_2"):
EDAssert.equal("Low-resolution pass, no overloads", strRankingResolutionLow)
elif (plugin.getPluginStrategyName == "EDPluginControlStrategyv1_2"):
EDAssert.equal("Low-resolution pass, no overloads and full completeness", strRankingResolutionLow)
def preProcess(self):
EDTestCasePluginExecuteControlCharacterisationv1_3.preProcess(self)
self.loadTestImage(["fewSpots_1_001.img"])
def preProcess(self):
EDTestCasePluginExecuteControlCharacterisationv1_3.preProcess(self)
self.loadTestImage([ "ref-thermo1_1_001.img", "ref-thermo1_1_002.img" ])
def __init__(self, _edStringTestName=None):
EDTestCasePluginExecuteControlCharacterisationv1_3.__init__(self, "EDTestCasePluginExecuteControlCharacterisationv1_3With2Sweep")
self.setConfigurationFile(self.getRefConfigFile())
self.setDataInputFile(os.path.join(self.getPluginTestsDataHome(), "XSDataInputCharacterisation_reference_2_sweep.xml"))
self.setNoExpectedWarningMessages(2)
def preProcess(self):
EDTestCasePluginExecuteControlCharacterisationv1_3.preProcess(self)
self.loadTestImage([ "ref-2m_RNASE_1_0002.cbf", "ref-2m_RNASE_1_0001.cbf" ])
def __init__(self, _edStringTestName=None):
EDTestCasePluginExecuteControlCharacterisationv1_3.__init__(self, "EDTestCasePluginExecuteControlCharacterisationv1_3_withForcedSpaceGroup")
self.setConfigurationFile(self.getRefConfigFile())
self.setDataInputFile(os.path.join(self.getPluginTestsDataHome(), "XSDataInputCharacterisation_withForcedSpaceGroup.xml"))
self.setNoExpectedWarningMessages(1)
self.setNoExpectedErrorMessages(0)
def preProcess(self):
EDTestCasePluginExecuteControlCharacterisationv1_3.preProcess(self)
self.loadTestImage([ "fewSpots_1_001.img" ])
def preProcess(self):
EDTestCasePluginExecuteControlCharacterisationv1_3.preProcess(self)
self.loadTestImage([ "bestBFactorFailed_2_001.img" ])
def preProcess(self):
EDTestCasePluginExecuteControlCharacterisationv1_3.preProcess(self)
self.loadTestImage([ "indexingError_2_001.img" ])
def preProcess(self):
EDTestCasePluginExecuteControlCharacterisationv1_3.preProcess(self)
self.loadTestImage(["integrationError_2_0001.img"])