from __future__ import print_function
from __future__ import division
from __future__ import unicode_literals
import os
import tempfile
import shutil
import numpy as np
import deepchem as dc
from FACTORS_datasets import load_factors
###Load data###
shard_size = 2000
num_trials = 2
print("About to load FACTORS data.")
FACTORS_tasks, datasets, transformers = load_factors(shard_size=shard_size)
train_dataset, valid_dataset, test_dataset = datasets
print("Number of compounds in train set")
print(len(train_dataset))
print("Number of compounds in validation set")
print(len(valid_dataset))
print("Number of compounds in test set")
print(len(test_dataset))
all_results = []
for trial in range(num_trials):
###Create model###
n_layers = 3
nb_epoch = 50
model = dc.models.ProgressiveMultitaskRegressor(
from __future__ import division
from __future__ import unicode_literals
import os
import numpy as np
import tempfile
import shutil
import deepchem as dc
from sklearn.ensemble import RandomForestRegressor
from FACTORS_datasets import load_factors
###Load data###
shard_size = 2000
num_trials = 5
print("About to load FACTORS data.")
FACTORS_tasks, datasets, transformers = load_factors(shard_size=shard_size)
train_dataset, valid_dataset, test_dataset = datasets
print("Number of compounds in train set")
print(len(train_dataset))
print("Number of compounds in validation set")
print(len(valid_dataset))
print("Number of compounds in test set")
print(len(test_dataset))
num_features = train_dataset.get_data_shape()[0]
print("Num features: %d" % num_features)
metric = dc.metrics.Metric(dc.metrics.pearson_r2_score, task_averager=np.mean)
def task_model_builder(model_dir):