def main():
modelChoose = None
id = sys.argv[1]
directory = sys.argv[2]
structure = getStructure(id, directory, modelChoose)
#Like biopython
for model in structure:
for chain in model:
for residue in chain:
print residue.get_resname()
for atom in residue:
print atom.get_name(), atom.get_coord()
def main():
id = sys.argv[1]
directory = sys.argv[2]
structure = getStructure(id,path=directory,modelChoose=None)
seqRes = structure.get_SeqRes()
#Show all residues and its chain
s = ""
for l in seqRes.getAllRes():
s = s + l.getChainId() + " " + l.getIdl3() + "\n"
print s
#For each chain, show its residue
for chainId in seqRes.getAllChain():
s = ""
NumRes = 0
Num = seqRes.getNumResChain(chainId)
for l in seqRes.getResChain(chainId):
s = s + l.getIdl3() + " "
NumRes += 1
print chainId
print s
print "Residue Number read was %i and the number residue in getNumRes is %i. If they are match, all right. Otherwise, can be error occurred " % (NumRes, Num)