def test_full_example(self):
""" Test that a minimal evidence example is parsed correctly """
xml_tree = ET.fromstring(full_evidence)
model = Model()
reaction = Reaction("Test")
target_item = Gene("target_id")
reference = Reference("ref_id")
model.add_reaction(reaction)
model.add_gene(target_item)
model.add_reference(reference)
assert len(model.all_evidences) == 0
assert len(reaction.evidences) == 0
parse_evidences_from_xml(xml_tree, model)
assert len(model.all_evidences) == 1
assert len(reaction.evidences) == 1
evidence = list(reaction.evidences)[0]
assert evidence.entity is reaction
assert evidence.target is target_item
assert evidence.assertion == "Catalyzed by"
assert evidence.eco == "ECO:0000000"
assert len(evidence.references) == 1
assert list(evidence.references)[0] is reference
assert evidence.comment == "test comment"
def test_minimal_example(self):
""" Test that a minimal evidence example is parsed correctly """
xml_tree = ET.fromstring(minimal_evidence)
model = Model()
reaction = Reaction("Test")
model.add_reaction(reaction)
assert len(model.all_evidences) == 0
assert len(reaction.evidences) == 0
parse_evidences_from_xml(xml_tree, model)
assert len(model.all_evidences) == 1
assert len(reaction.evidences) == 1
evidence = list(reaction.evidences)[0]
assert evidence.entity is reaction
assert evidence.assertion == "Presence"
def test_add_item_dialog_reject(self):
tab = ReactionTab()
model = Model()
model.add_reaction = Mock()
model.QtReactionTable.update_row_from_item = Mock()
tab.set_model(model)
assert model.add_reaction.called is False
assert model.QtReactionTable.update_row_from_item.called is False
tab.addItemSlot()
assert model.add_reaction.called is False
assert model.QtReactionTable.update_row_from_item.called is False
