def clear(self): self.top_mass_spec = None self.bottom_mass_spec = None self.top_label = None self.bottom_label = None self.all_masses = None self.legend = None self.plotted = False ChartPanelBase.clear(self)
def __init__(
self, parent, top_mass_spec=None, bottom_mass_spec=None,
top_label='', bottom_label='', id=wx.ID_ANY,
pos=wx.DefaultPosition, size=wx.DefaultSize,
style=0, name="Head2TailSpectrumPanel",
):
"""
:param parent: The parent window.
:type parent: wx.Window
:param top_mass_spec: The Mass Spectrum to plot in the top half of the panel,
or None for two-stage plotting
:type top_mass_spec: :class:`pyms.Spectrum.MassSpectrum` or None
:param bottom_mass_spec: The Mass Spectrum to plot in the bottom half of the panel,
or None for two-stage plotting
:type bottom_mass_spec: :class:`pyms.Spectrum.MassSpectrum` or None
:param top_label: A label for the spectrum in the top half of the panel
:type top_label: str, optional
:param bottom_label: A label for the spectrum in the bottom half of the panel
:type bottom_label: str, optional
:param id: An identifier for the panel. wx.ID_ANY is taken to mean a default.
:type id: wx.WindowID, optional
:param pos: The panel position. The value wx.DefaultPosition indicates a default position,
chosen by either the windowing system or wxWidgets, depending on platform.
:type pos: wx.Point, optional
:param size: The panel size. The value wx.DefaultSize indicates a default size,
chosen by either the windowing system or wxWidgets, depending on platform.
:type size: wx.Size, optional
:param style: The window style. See wxPanel.
:type style: int, optional
:param name: Window name.
:type name: str, optional
"""
fig = Figure()
ax = fig.add_subplot(111, projection="XPanAxes") # 1x1 grid, first subplot
ChartPanelBase.__init__(self, parent, fig, ax, id, pos, size, style, name)
pub.subscribe(self.view_mode_changed, "view_mode_changed")
self.constrain_zoom("x")
self.top_mass_spec = None
self.bottom_mass_spec = None
self.top_label = None
self.bottom_label = None
self.all_masses = None
self.legend = None
self.plotted = False
if top_mass_spec and bottom_mass_spec:
self.plot_head2tail(top_mass_spec, bottom_mass_spec, top_label, bottom_label)
def set_mass_spec(self, mass_spec, label=''): """ Sets the mass spectrum for the SpectrumPanel for two step creation. Call plot_mass_spec without the mass_spec argument to actually plot the chart :param mass_spec: The Mass Spectrum to plot in the panel :type mass_spec: :class:`pyms.Spectrum.MassSpectrum` :param label: A label for the spectrum :type label: str, optional """ ChartPanelBase.clear(self) self.mass_spec = mass_spec if label: self.label = label self.plotted = False
def set_bottom_mass_spec(self, bottom_mass_spec, bottom_label=''): """ Sets the mass spectrum for the bottom of the SpectrumPanel for two step creation. Call plot_mass_spec without the mass_spec argument to actually plot the chart :param bottom_mass_spec: The Mass Spectrum to plot in the bottom half of the panel :type bottom_mass_spec: :class:`pyms.Spectrum.MassSpectrum` :param bottom_label: A label for the spectrum in the bottom half of the panel :type bottom_label: str, optional """ ChartPanelBase.clear(self) # Normalize the mass spectrum self.bottom_mass_spec = normalize_mass_spec(bottom_mass_spec) if bottom_label: self.bottom_label = bottom_label self.plotted = False
def __init__(
self,
experiment,
parent,
id=wx.ID_ANY,
pos=wx.DefaultPosition,
size=wx.DefaultSize,
style=0,
name="ChromatogramPanel",
):
"""
:param experiment:
:type experiment:
:param parent: The parent window.
:type parent: wx.Window
:param id: An identifier for the panel. wx.ID_ANY is taken to mean a default.
:type id: wx.WindowID, optional
:param pos: The panel position. The value wx.DefaultPosition indicates a default position, chosen by either the windowing system or wxWidgets, depending on platform.
:type pos: wx.Point, optional
:param size: The panel size. The value wx.DefaultSize indicates a default size, chosen by, either the windowing system or wxWidgets, depending on platform.
:type size: wx.Size, optional
:param style: The window style. See wxPanel.
:type style: int, optional
:param name: Window name.
:type name: str, optional
"""
self.experiment = experiment
fig = Figure()
ax = fig.add_subplot(111,
projection="XPanAxes") # 1x1 grid, first subplot
ChartPanelBase.__init__(self, parent, fig, ax, id, pos, size, style,
name)
pub.subscribe(self.view_mode_changed, "view_mode_changed")
self.display()
self._view_spectrum_enabled = False
def set_mass_specs(self, top_mass_spec, bottom_mass_spec, top_label='', bottom_label=''): """ Sets the mass spectra for the SpectrumPanel for two step creation. Call plot_mass_spec without the mass_spec argument to actually plot the chart :param top_mass_spec: The Mass Spectrum to plot in the top half of the panel :type top_mass_spec: :class:`pyms.Spectrum.MassSpectrum` :param bottom_mass_spec: The Mass Spectrum to plot in the bottom half of the panel :type bottom_mass_spec: :class:`pyms.Spectrum.MassSpectrum` :param top_label: A label for the spectrum in the top half of the panel :type top_label: str, optional :param bottom_label: A label for the spectrum in the bottom half of the panel :type bottom_label: str, optional """ ChartPanelBase.clear(self) self.top_mass_spec = top_mass_spec if top_label: self.top_label = top_label self.bottom_mass_spec = bottom_mass_spec if bottom_label: self.bottom_label = bottom_label self.plotted = False
def clear(self): self.mass_spec = None self.label = None self.legend = None self.plotted = False ChartPanelBase.clear(self)