def post(self, request, version_id):
"""
Run a tool on the cluster
"""
try:
notification_method = None
notification_url = None
notification = request.POST.get("Notification", None)
if notification:
notification_method = notification.split()[0]
notification_url = notification.split()[1]
notification_email = request.POST.get("NotificationEmail", None)
job_name = request.POST.get("JobName", "")
description = request.POST.get("Description", "")
parameters = json.loads(request.POST["Parameters"])
#settings = json.loads(request.POST["Settings"])
files = []
for k, v in request.FILES.iteritems():
for pf in request.FILES.getlist(k):
files.append(pf)
jms = JobManager(user=request.user)
version = jms.GetToolVersionByID(int(version_id))
job = jms.CreateJob(job_name, description, ToolVersion=version, JobTypeID=2,
NotificationMethod=notification_method, NotificationURL=notification_url,
NotificationEmail=notification_email)
jobstage = jms.RunToolJob(job, parameters, files)
return Response(jobstage.Job.JobID)
except Exception, ex:
with open("/tmp/create_tool_job.txt", "w") as f:
print >> f, traceback.format_exc()
return Response(str(ex), status=500)
def post(self, request):
"""
Submit a custom script to be run on the cluster
"""
job_name = request.POST.get("JobName", "")
description = request.POST.get("Description", "")
commands = request.POST["Commands"]
settings = json.loads(request.POST["Settings"])
files = request.FILES.getlist("files")
notification_method = request.POST.get("NotificationMethod", "GET")
notification_url = request.POST.get("NotificationURL", None)
notification_email = request.POST.get("NotificationEmail", None)
jms = JobManager(user=request.user)
job = jms.CreateJob(job_name, description, 1, NotificationMethod=notification_method,
NotificationURL=notification_url, NotificationEmail=notification_email)
jobstage = jms.RunCustomJob(job, commands, settings, files)
return Response(jobstage.Job.JobID)
def post(self, request, version_id):
"""
Run a workflow on the cluster
"""
notification_method = None
notification_url = None
notification = request.POST.get("Notification", None)
if notification:
notification_method = notification.split()[0]
notification_url = notification.split()[1]
notification_email = request.POST.get("NotificationEmail", None)
job_name = request.POST["JobName"]
description = request.POST["Description"]
stages = json.loads(request.POST["Stages"])
files = {}
for k, v in request.FILES.iteritems():
if k not in files:
files[k] = []
for f in request.FILES.getlist(k):
files[k].append(f)
jms = JobManager(user=request.user)
version = jms.GetWorkflowVersionByID(version_id)
job = jms.CreateJob(job_name, description, WorkflowVersion=version, JobTypeID=3 ,
NotificationMethod=notification_method, NotificationURL=notification_url,
NotificationEmail=notification_email)
jms.RunWorkflowJob(job, stages, files)
return Response(job.JobID)
