def calculate_locally(self):
if not self.cqi_setup_tab.use_custom.isChecked():
QtWidgets.QMessageBox.critical(None, self.tr("Error"),
self.tr("Due to the options you have chosen, this calculation must occur offline. You MUST select a custom precipitation or evapotranspiration layer dataset."))
return
if len(self.cqi_setup_tab.use_custom_ppt.layer_list) == 0:
QtWidgets.QMessageBox.critical(None, self.tr("Error"),
self.tr("You must add a yearly mean precipitation layer to your map before you can run the calculation."))
return
if len(self.cqi_setup_tab.use_custom_pet.layer_list) == 0:
QtWidgets.QMessageBox.critical(None, self.tr("Error"),
self.tr("You must add mean potential evapotranspiration layer to your map before you can run the calculation."))
return
# Select the initial and final bands from initial and final datasets
# (in case there is more than one lc band per dataset)
custom_pet_vrt = self.cqi_setup_tab.use_custom_pet.get_vrt()
custom_ppt_vrt = self.cqi_setup_tab.use_custom_ppt.get_vrt()
if self.aoi.calc_frac_overlap(QgsGeometry.fromRect(self.cqi_setup_tab.use_custom_ppt.get_layer().extent())) < .99:
QtWidgets.QMessageBox.critical(None, self.tr("Error"),
self.tr("Area of interest is not entirely within the precipitation layer."))
return
if self.aoi.calc_frac_overlap(QgsGeometry.fromRect(self.cqi_setup_tab.use_custom_pet.get_layer().extent())) < .99:
QtWidgets.QMessageBox.critical(None, self.tr("Error"),
self.tr("Area of interest is not entirely within the potential evapotranspiration layer."))
return
out_f = self.get_save_raster()
if not out_f:
return
self.close()
crosses_180th, geojsons = self.aoi.bounding_box_gee_geojson()
val = []
n = 1
if self.area_tab.area_fromfile.isChecked():
for f in self.aoi.get_layer_wgs84().getFeatures():
# Get an OGR geometry from the QGIS geometry
geom = f.geometry()
val.append(geom)
n += 1
# stringify json object
val_string = '{}'.format(json.loads(val[0].asJson()))
# create ogr geometry
val_geom = ogr.CreateGeometryFromJson(val_string)
# simplify polygon to tolerance of 0.003
val_geom_simplified = val_geom.Simplify(0.003)
# fetch coordinates from json
coords= json.loads(val_geom_simplified.ExportToJson())['coordinates']
geometries = {
"coordinates":coords,
"type":"Polygon"
}
elif self.area_tab.area_fromadmin.isChecked():
geometries ={
"coordinates":self.get_admin_poly_geojson()['geometry']['coordinates'][0],
"type":"Polygon"
}
elif self.area_tab.area_frompoint.isChecked():
point = QgsPointXY(float(self.area_tab.area_frompoint_point_x.text()), float(self.area_tab.area_frompoint_point_y.text()))
crs_src = QgsCoordinateReferenceSystem(self.area_tab.canvas.mapSettings().destinationCrs().authid())
point = QgsCoordinateTransform(crs_src, self.aoi.crs_dst, QgsProject.instance()).transform(point)
geometries = json.loads(QgsGeometry.fromPointXY(point).asJson())
# write aoi geometry to file for masking output
aoi_geom = {
"type": "FeatureCollection",
"features": [
{
"type": "Feature",
"properties": {},
"geometry": geometries
}
]
}
aoi_file = os.path.join(os.path.dirname(os.path.realpath(__file__)), 'data', 'aoi.geojson')
with open(aoi_file, 'w') as filetowrite:
filetowrite.write(json.dumps(aoi_geom))
# Add the custom layers to a VRT in case they don't match in resolution,
# and set proper output bounds
in_vrt = tempfile.NamedTemporaryFile(suffix='.vrt').name
gdal.BuildVRT(in_vrt,
[custom_pet_vrt, custom_ppt_vrt],
resolution='highest',
resampleAlg=gdal.GRA_NearestNeighbour,
outputBounds=self.aoi.get_aligned_output_bounds_deprecated(custom_ppt_vrt),
separate=True)
lc_change_worker = StartWorker(ClimateQualityWorker,
'calculating climate quality index', in_vrt,
out_f)
if not lc_change_worker.success:
QtWidgets.QMessageBox.critical(None, self.tr("Error"),
self.tr("Error calculating climate quality index."), None)
return
band_info = [BandInfo("Climate Quality Index (year)", add_to_map=True)]
out_json = os.path.splitext(out_f)[0] + '.json'
create_local_json_metadata(out_json, out_f, band_info)
schema = BandInfoSchema()
for band_number in range(len(band_info)):
b = schema.dump(band_info[band_number])
if b['add_to_map']:
# The +1 is because band numbers start at 1, not zero
add_layer(out_f, band_number + 1, b)
def calculate_locally(self):
if not self.groupBox_custom_SOC.isChecked():
QtWidgets.QMessageBox.critical(
None, self.tr("Error"),
self.
tr("Due to the options you have chosen, this calculation must occur offline. You MUST select a custom soil organic carbon dataset."
))
return
if not self.lc_setup_tab.use_custom.isChecked():
QtWidgets.QMessageBox.critical(
None, self.tr("Error"),
self.
tr("Due to the options you have chosen, this calculation must occur offline. You MUST select a custom land cover dataset."
))
return
if len(self.comboBox_custom_soc.layer_list) == 0:
QtWidgets.QMessageBox.critical(
None, self.tr("Error"),
self.
tr("You must add a soil organic carbon layer to your map before you can run the calculation."
))
return
year_baseline = self.lc_setup_tab.get_initial_year()
year_target = self.lc_setup_tab.get_final_year()
if int(year_baseline) >= int(year_target):
QtWidgets.QMessageBox.information(
None, self.tr("Warning"),
self.
tr('The baseline year ({}) is greater than or equal to the target year ({}) - this analysis might generate strange results.'
.format(year_baseline, year_target)))
if self.aoi.calc_frac_overlap(
QgsGeometry.fromRect(self.lc_setup_tab.use_custom_initial.
get_layer().extent())) < .99:
QtWidgets.QMessageBox.critical(
None, self.tr("Error"),
self.
tr("Area of interest is not entirely within the initial land cover layer."
))
return
if self.aoi.calc_frac_overlap(
QgsGeometry.fromRect(self.lc_setup_tab.use_custom_final.
get_layer().extent())) < .99:
QtWidgets.QMessageBox.critical(
None, self.tr("Error"),
self.
tr("Area of interest is not entirely within the final land cover layer."
))
return
out_f = self.get_save_raster()
if not out_f:
return
self.close()
# Select the initial and final bands from initial and final datasets
# (in case there is more than one lc band per dataset)
lc_initial_vrt = self.lc_setup_tab.use_custom_initial.get_vrt()
lc_final_vrt = self.lc_setup_tab.use_custom_final.get_vrt()
lc_files = [lc_initial_vrt, lc_final_vrt]
lc_years = [
self.lc_setup_tab.get_initial_year(),
self.lc_setup_tab.get_final_year()
]
lc_vrts = []
for i in range(len(lc_files)):
f = tempfile.NamedTemporaryFile(suffix='.vrt').name
# Add once since band numbers don't start at zero
gdal.BuildVRT(
f,
lc_files[i],
bandList=[i + 1],
outputBounds=self.aoi.get_aligned_output_bounds_deprecated(
lc_initial_vrt),
resolution='highest',
resampleAlg=gdal.GRA_NearestNeighbour,
separate=True)
lc_vrts.append(f)
soc_vrt = self.comboBox_custom_soc.get_vrt()
climate_zones = os.path.join(os.path.dirname(__file__), 'data',
'IPCC_Climate_Zones.tif')
in_files = [soc_vrt, climate_zones]
in_files.extend(lc_vrts)
in_vrt = tempfile.NamedTemporaryFile(suffix='.vrt').name
log(u'Saving SOC input files to {}'.format(in_vrt))
gdal.BuildVRT(
in_vrt,
in_files,
resolution='highest',
resampleAlg=gdal.GRA_NearestNeighbour,
outputBounds=self.aoi.get_aligned_output_bounds_deprecated(
lc_initial_vrt),
separate=True)
# Lc bands start on band 3 as band 1 is initial soc, and band 2 is
# climate zones
lc_band_nums = np.arange(len(lc_files)) + 3
log(u'Saving soil organic carbon to {}'.format(out_f))
soc_worker = StartWorker(SOCWorker,
'calculating change in soil organic carbon',
in_vrt, out_f, lc_band_nums, lc_years,
self.get_fl())
if not soc_worker.success:
QtWidgets.QMessageBox.critical(
None, self.tr("Error"),
self.tr("Error calculating change in soil organic carbon."))
return
band_infos = [
BandInfo("Soil organic carbon (degradation)",
add_to_map=True,
metadata={
'year_start': lc_years[0],
'year_end': lc_years[-1]
})
]
for year in lc_years:
if (year == lc_years[0]) or (year == lc_years[-1]):
# Add first and last years to map
add_to_map = True
else:
add_to_map = False
band_infos.append(
BandInfo("Soil organic carbon",
add_to_map=add_to_map,
metadata={'year': year}))
for year in lc_years:
band_infos.append(
BandInfo("Land cover (7 class)", metadata={'year': year}))
out_json = os.path.splitext(out_f)[0] + '.json'
create_local_json_metadata(out_json, out_f, band_infos)
schema = BandInfoSchema()
for band_number in range(len(band_infos)):
b = schema.dump(band_infos[band_number])
if b['add_to_map']:
# The +1 is because band numbers start at 1, not zero
add_layer(out_f, band_number + 1, b)
def calculate_locally(self):
trans_matrix = [[
11, 12, 13, 14, 15, 16, 17, 21, 22, 23, 24, 25, 26, 27, 31, 32, 33,
34, 35, 36, 37, 41, 42, 43, 44, 45, 46, 47, 51, 52, 53, 54, 55, 56,
57, 61, 62, 63, 64, 65, 66, 67
],
self.lc_define_deg_tab.trans_matrix_get()]
# Remap the persistence classes so they are sequential, making them
# easier to assign a clear color ramp in QGIS
persistence_remap = [[
11, 12, 13, 14, 15, 16, 17, 21, 22, 23, 24, 25, 26, 27, 31, 32, 33,
34, 35, 36, 37, 41, 42, 43, 44, 45, 46, 47, 51, 52, 53, 54, 55, 56,
57, 61, 62, 63, 64, 65, 66, 67, 71, 72, 73, 74, 75, 76, 77
],
[
1, 12, 13, 14, 15, 16, 17, 21, 2, 23, 24, 25,
26, 27, 31, 32, 3, 34, 35, 36, 37, 41, 42, 43,
4, 45, 46, 47, 51, 52, 53, 54, 5, 56, 57, 61,
62, 63, 64, 65, 6, 67, 71, 72, 73, 74, 75, 76,
7
]]
if not self.lc_setup_tab.use_custom.isChecked():
QtWidgets.QMessageBox.critical(
None, self.tr("Error"),
self.
tr("Due to the options you have chosen, this calculation must occur offline. You MUST select a custom land cover dataset."
))
return
if len(self.lc_setup_tab.use_custom_initial.layer_list) == 0:
QtWidgets.QMessageBox.critical(
None, self.tr("Error"),
self.
tr("You must add an initial land cover layer to your map before you can run the calculation."
))
return
if len(self.lc_setup_tab.use_custom_final.layer_list) == 0:
QtWidgets.QMessageBox.critical(
None, self.tr("Error"),
self.
tr("You must add a final land cover layer to your map before you can run the calculation."
))
return
# Select the initial and final bands from initial and final datasets
# (in case there is more than one lc band per dataset)
lc_initial_vrt = self.lc_setup_tab.use_custom_initial.get_vrt()
lc_final_vrt = self.lc_setup_tab.use_custom_final.get_vrt()
year_baseline = self.lc_setup_tab.get_initial_year()
year_target = self.lc_setup_tab.get_final_year()
if int(year_baseline) >= int(year_target):
QtWidgets.QMessageBox.information(
None, self.tr("Warning"),
self.
tr('The initial year ({}) is greater than or equal to the target year ({}) - this analysis might generate strange results.'
.format(year_baseline, year_target)))
if self.aoi.calc_frac_overlap(
QgsGeometry.fromRect(self.lc_setup_tab.use_custom_initial.
get_layer().extent())) < .99:
QtWidgets.QMessageBox.critical(
None, self.tr("Error"),
self.
tr("Area of interest is not entirely within the initial land cover layer."
))
return
if self.aoi.calc_frac_overlap(
QgsGeometry.fromRect(self.lc_setup_tab.use_custom_initial.
get_layer().extent())) < .99:
QtWidgets.QMessageBox.critical(
None, self.tr("Error"),
self.
tr("Area of interest is not entirely within the final land cover layer."
))
return
out_f = self.get_save_raster()
if not out_f:
return
self.close()
# Add the lc layers to a VRT in case they don't match in resolution,
# and set proper output bounds
in_vrt = tempfile.NamedTemporaryFile(suffix='.vrt').name
gdal.BuildVRT(
in_vrt, [lc_initial_vrt, lc_final_vrt],
resolution='highest',
resampleAlg=gdal.GRA_NearestNeighbour,
outputBounds=self.aoi.get_aligned_output_bounds_deprecated(
lc_initial_vrt),
separate=True)
lc_change_worker = StartWorker(LandCoverChangeWorker,
'calculating land cover change', in_vrt,
out_f, trans_matrix, persistence_remap)
if not lc_change_worker.success:
QtWidgets.QMessageBox.critical(
None, self.tr("Error"),
self.tr("Error calculating land cover change."), None)
return
band_info = [
BandInfo("Land cover (degradation)",
add_to_map=True,
metadata={
'year_baseline': year_baseline,
'year_target': year_target
}),
BandInfo("Land cover (7 class)", metadata={'year': year_baseline}),
BandInfo("Land cover (7 class)", metadata={'year': year_target}),
BandInfo("Land cover transitions",
add_to_map=True,
metadata={
'year_baseline': year_baseline,
'year_target': year_target
})
]
out_json = os.path.splitext(out_f)[0] + '.json'
create_local_json_metadata(out_json, out_f, band_info)
schema = BandInfoSchema()
for band_number in range(len(band_info)):
b = schema.dump(band_info[band_number])
if b['add_to_map']:
# The +1 is because band numbers start at 1, not zero
add_layer(out_f, band_number + 1, b)
def btn_calculate(self):
######################################################################
# Check that all needed output files are selected
if not self.output_file_layer.text():
QtWidgets.QMessageBox.information(
None, self.tr("Error"),
self.
tr("Choose an output file for the biomass difference layers."))
return
if not self.output_file_table.text():
QtWidgets.QMessageBox.information(
None, self.tr("Error"),
self.tr("Choose an output file for the summary table."))
return
# Note that the super class has several tests in it - if they fail it
# returns False, which would mean this function should stop execution
# as well.
ret = super(DlgCalculateRestBiomassSummaryTable, self).btn_calculate()
if not ret:
return
######################################################################
# Check that all needed input layers are selected
if len(self.combo_layer_biomass_diff.layer_list) == 0:
QtWidgets.QMessageBox.critical(
None, self.tr("Error"),
self.
tr("You must add a biomass layer to your map before you can use the summary tool."
))
return
#######################################################################
# Check that the layers cover the full extent needed
if self.aoi.calc_frac_overlap(
QgsGeometry.fromRect(
self.combo_layer_biomass_diff.get_layer().extent())) < .99:
QtWidgets.QMessageBox.critical(
None, self.tr("Error"),
self.
tr("Area of interest is not entirely within the biomass layer."
))
return
self.close()
#######################################################################
# Prep files
in_file = self.combo_layer_biomass_diff.get_data_file()
# Remember the first value is an indication of whether dataset is
# wrapped across 180th meridian
wkts = self.aoi.meridian_split('layer', 'wkt', warn=False)[1]
bbs = self.aoi.get_aligned_output_bounds(in_file)
output_biomass_diff_tifs = []
output_biomass_diff_json = self.output_file_layer.text()
for n in range(len(wkts)):
if len(wkts) > 1:
output_biomass_diff_tif = os.path.splitext(
output_biomass_diff_json)[0] + '_{}.tif'.format(n)
else:
output_biomass_diff_tif = os.path.splitext(
output_biomass_diff_json)[0] + '.tif'
output_biomass_diff_tifs.append(output_biomass_diff_tif)
log(u'Saving clipped biomass file to {}'.format(
output_biomass_diff_tif))
geojson = json_geom_to_geojson(
QgsGeometry.fromWkt(wkts[n]).asJson())
clip_worker = StartWorker(
ClipWorker,
'masking layers (part {} of {})'.format(n + 1, len(wkts)),
in_file, output_biomass_diff_tif, geojson, bbs[n])
if not clip_worker.success:
QtWidgets.QMessageBox.critical(
None, self.tr("Error"),
self.tr("Error masking input layers."))
return
######################################################################
# Calculate biomass change summary table
log('Calculating summary table...')
rest_summary_worker = StartWorker(
RestBiomassSummaryWorker,
'calculating summary table (part {} of {})'.format(
n + 1, len(wkts)), output_biomass_diff_tif)
if not rest_summary_worker.success:
QtWidgets.QMessageBox.critical(
None, self.tr("Error"),
self.tr("Error calculating biomass change summary table."))
return
else:
if n == 0:
biomass_initial, \
biomass_change, \
area_site = rest_summary_worker.get_return()
else:
this_biomass_initial, \
this_biomass_change, \
this_area_site = rest_summary_worker.get_return()
biomass_initial = biomass_initial + this_biomass_initial
biomass_change = biomass_change + this_biomass_change
area_site = area_site + this_area_site
log('area_site: {}'.format(area_site))
log('biomass_initial: {}'.format(biomass_initial))
log('biomass_change: {}'.format(biomass_change))
# Figure out how many years of restoration this data is for, take this
# from the second band in the in file
band_infos = get_band_infos(in_file)
length_yr = band_infos[1]['metadata']['years']
# And make a list of the restoration types
rest_types = [
band_info['metadata']['type']
for band_info in band_infos[1:len(band_infos)]
]
make_summary_table(self.output_file_table.text(), biomass_initial,
biomass_change, area_site, length_yr, rest_types)
# Add the biomass_dif layers to the map
if len(output_biomass_diff_tifs) == 1:
output_file = output_biomass_diff_tifs[0]
else:
output_file = os.path.splitext(
output_biomass_diff_json)[0] + '.vrt'
gdal.BuildVRT(output_file, output_biomass_diff_tifs)
# Update the band infos to use the masking value (-32767) as the file
# no data value, so that stretches are more likely to compute correctly
for item in band_infos:
item['no_data_value'] = -32767
create_local_json_metadata(
output_biomass_diff_json,
output_file,
band_infos,
metadata={
'task_name': self.options_tab.task_name.text(),
'task_notes': self.options_tab.task_notes.toPlainText()
})
schema = BandInfoSchema()
for n in range(1, len(band_infos)):
add_layer(output_file, n + 1, schema.dump(band_infos[n]))
return True
def btn_calculate(self):
# Note that the super class has several tests in it - if they fail it
# returns False, which would mean this function should stop execution
# as well.
ret = super(DlgCalculateSDISummaryTableAdmin, self).btn_calculate()
if not ret:
return
######################################################################
# Check that all needed input layers are selected
if len(self.combo_layer_sqi.layer_list) == 0:
QtWidgets.QMessageBox.critical(
None, self.tr("Error"),
self.
tr("You must add a Soil Quality Indicator layer to your map before you can use the SDI calculation tool."
))
return
if len(self.combo_layer_vqi.layer_list) == 0:
QtWidgets.QMessageBox.critical(
None, self.tr("Error"),
self.
tr("You must add a Vegatation Quality Indicator layer to your map before you can use the SDI calculation tool."
))
return
if len(self.combo_layer_cqi.layer_list) == 0:
QtWidgets.QMessageBox.critical(
None, self.tr("Error"),
self.
tr("You must add a Climate Quality Indicator layer to your map before you can use the SDI calculation tool."
))
return
if len(self.combo_layer_mqi.layer_list) == 0:
QtWidgets.QMessageBox.critical(
None, self.tr("Error"),
self.
tr("You must add a Management Quality Indicator layer to your map before you can use the SDI calculation tool."
))
return
#######################################################################
# Check that the layers cover the full extent needed
if self.aoi.calc_frac_overlap(
QgsGeometry.fromRect(
self.combo_layer_sqi.get_layer().extent())) < .99:
QtWidgets.QMessageBox.critical(
None, self.tr("Error"),
self.
tr("Area of interest is not entirely within the Soil Quality Indicator layer."
))
return
if self.aoi.calc_frac_overlap(
QgsGeometry.fromRect(
self.combo_layer_vqi.get_layer().extent())) < .99:
QtWidgets.QMessageBox.critical(
None, self.tr("Error"),
self.
tr("Area of interest is not entirely within the Vegetation Quality Indicator layer."
))
return
if self.aoi.calc_frac_overlap(
QgsGeometry.fromRect(
self.combo_layer_cqi.get_layer().extent())) < .99:
QtWidgets.QMessageBox.critical(
None, self.tr("Error"),
self.
tr("Area of interest is not entirely within the Climate Quality Indicator layer."
))
return
if self.aoi.calc_frac_overlap(
QgsGeometry.fromRect(
self.combo_layer_mqi.get_layer().extent())) < .99:
QtWidgets.QMessageBox.critical(
None, self.tr("Error"),
self.
tr("Area of interest is not entirely within the Management Quality Indicator layer."
))
return
out_f = self.get_save_raster()
if not out_f:
return
self.close()
crosses_180th, geojsons = self.aoi.bounding_box_gee_geojson()
val = []
n = 1
if self.area_tab.area_fromfile.isChecked():
for f in self.aoi.get_layer_wgs84().getFeatures():
# Get an OGR geometry from the QGIS geometry
geom = f.geometry()
val.append(geom)
n += 1
# stringify json object
val_string = '{}'.format(json.loads(val[0].asJson()))
# create ogr geometry
val_geom = ogr.CreateGeometryFromJson(val_string)
# simplify polygon to tolerance of 0.003
val_geom_simplified = val_geom.Simplify(0.003)
# fetch coordinates from json
coords = json.loads(
val_geom_simplified.ExportToJson())['coordinates']
geometries = {"coordinates": coords, "type": "Polygon"}
elif self.area_tab.area_fromadmin.isChecked():
geometries = {
"coordinates":
self.get_admin_poly_geojson()['geometry']['coordinates'][0],
"type":
"Polygon"
}
elif self.area_tab.area_frompoint.isChecked():
point = QgsPointXY(
float(self.area_tab.area_frompoint_point_x.text()),
float(self.area_tab.area_frompoint_point_y.text()))
crs_src = QgsCoordinateReferenceSystem(
self.area_tab.canvas.mapSettings().destinationCrs().authid())
point = QgsCoordinateTransform(
crs_src, self.aoi.crs_dst,
QgsProject.instance()).transform(point)
geometries = json.loads(QgsGeometry.fromPointXY(point).asJson())
# write aoi geometry to file for masking output
aoi_geom = {
"type":
"FeatureCollection",
"features": [{
"type": "Feature",
"properties": {},
"geometry": geometries
}]
}
aoi_file = os.path.join(os.path.dirname(os.path.realpath(__file__)),
'data', 'aoi.geojson')
with open(aoi_file, 'w') as filetowrite:
filetowrite.write(json.dumps(aoi_geom))
#######################################################################
# Load all datasets to VRTs (to select only the needed bands)
sqi_vrt = self.combo_layer_sqi.get_vrt()
vqi_vrt = self.combo_layer_vqi.get_vrt()
cqi_vrt = self.combo_layer_cqi.get_vrt()
mqi_vrt = self.combo_layer_mqi.get_vrt()
# Add the custom layers to a VRT in case they don't match in resolution,
# and set proper output bounds
in_vrt = tempfile.NamedTemporaryFile(suffix='.vrt').name
gdal.BuildVRT(
in_vrt, [sqi_vrt, vqi_vrt, cqi_vrt, mqi_vrt],
resolution='highest',
resampleAlg=gdal.GRA_NearestNeighbour,
outputBounds=self.aoi.get_aligned_output_bounds_deprecated(
sqi_vrt),
separate=True)
lc_change_worker = StartWorker(
SDIWorker, 'calculating Sensitivity Desertification index', in_vrt,
out_f)
if not lc_change_worker.success:
QtWidgets.QMessageBox.critical(
None, self.tr("Error"),
self.tr(
"Error calculating Sensitivity Desertification index."),
None)
return
band_info = [
BandInfo("Sensitivity Desertification Index", add_to_map=True)
]
out_json = os.path.splitext(out_f)[0] + '.json'
create_local_json_metadata(out_json, out_f, band_info)
schema = BandInfoSchema()
for band_number in range(len(band_info)):
b = schema.dump(band_info[band_number])
if b['add_to_map']:
# The +1 is because band numbers start at 1, not zero
add_layer(out_f, band_number + 1, b)
def calculate_locally(self):
if not self.sqi_setup_tab.use_custom.isChecked():
QtWidgets.QMessageBox.critical(None, self.tr("Error"),
self.tr("Due to the options you have chosen, this calculation must occur offline. You MUST select a custom land cover dataset."))
return
if len(self.sqi_setup_tab.use_custom_pm.layer_list) == 0:
QtWidgets.QMessageBox.critical(None, self.tr("Error"),
self.tr("You must add an parent material layer to your map before you can run the calculation."))
return
if len(self.sqi_setup_tab.use_custom_rock_frag.layer_list) == 0:
QtWidgets.QMessageBox.critical(None, self.tr("Error"),
self.tr("You must add a rock fragment layer to your map before you can run the calculation."))
return
if len(self.sqi_setup_tab.use_custom_texture.layer_list) == 0:
QtWidgets.QMessageBox.critical(None, self.tr("Error"),
self.tr("You must add a soil texture layer to your map before you can run the calculation."))
return
if len(self.sqi_setup_tab.use_custom_drainage.layer_list) == 0:
QtWidgets.QMessageBox.critical(None, self.tr("Error"),
self.tr("You must add a drainage layer to your map before you can run the calculation."))
return
# select the parent material, slope, soil texture, drainage and rock fragment datasets
pm_vrt = self.sqi_setup_tab.use_custom_pm.get_vrt()
drainage_vrt = self.sqi_setup_tab.use_custom_drainage.get_vrt()
texture_vrt = self.sqi_setup_tab.use_custom_texture.get_vrt()
rock_frag_vrt = self.sqi_setup_tab.use_custom_rock_frag.get_vrt()
soil_depth = self.sqi_setup_tab.use_depth.value()
if self.aoi.calc_frac_overlap(QgsGeometry.fromRect(self.sqi_setup_tab.use_custom_pm.get_layer().extent())) < .99:
QtWidgets.QMessageBox.critical(None, self.tr("Error"),
self.tr("Area of interest is not entirely within the parent material layer."))
return
if self.aoi.calc_frac_overlap(QgsGeometry.fromRect(self.sqi_setup_tab.use_custom_drainage.get_layer().extent())) < .99:
QtWidgets.QMessageBox.critical(None, self.tr("Error"),
self.tr("Area of interest is not entirely within the drainage layer."))
return
if self.aoi.calc_frac_overlap(QgsGeometry.fromRect(self.sqi_setup_tab.use_custom_rock_frag.get_layer().extent())) < .99:
QtWidgets.QMessageBox.critical(None, self.tr("Error"),
self.tr("Area of interest is not entirely within the rock fragment layer."))
return
if self.aoi.calc_frac_overlap(QgsGeometry.fromRect(self.sqi_setup_tab.use_custom_texture.get_layer().extent())) < .99:
QtWidgets.QMessageBox.critical(None, self.tr("Error"),
self.tr("Area of interest is not entirely within the soil texture layer."))
return
out_f = self.get_save_raster()
if not out_f:
return
self.close()
crosses_180th, geojsons = self.aoi.bounding_box_gee_geojson()
val = []
n = 1
if self.area_tab.area_fromfile.isChecked():
for f in self.aoi.get_layer_wgs84().getFeatures():
# Get an OGR geometry from the QGIS geometry
geom = f.geometry()
val.append(geom)
n += 1
# stringify json object
val_string = '{}'.format(json.loads(val[0].asJson()))
# create ogr geometry
val_geom = ogr.CreateGeometryFromJson(val_string)
# simplify polygon to tolerance of 0.003
val_geom_simplified = val_geom.Simplify(0.003)
# fetch coordinates from json
coords= json.loads(val_geom_simplified.ExportToJson())['coordinates']
geometries = {
"coordinates":coords,
"type":"Polygon"
}
elif self.area_tab.area_fromadmin.isChecked():
geometries ={
"coordinates":self.get_admin_poly_geojson()['geometry']['coordinates'][0],
"type":"Polygon"
}
elif self.area_tab.area_frompoint.isChecked():
point = QgsPointXY(float(self.area_tab.area_frompoint_point_x.text()), float(self.area_tab.area_frompoint_point_y.text()))
crs_src = QgsCoordinateReferenceSystem(self.area_tab.canvas.mapSettings().destinationCrs().authid())
point = QgsCoordinateTransform(crs_src, self.aoi.crs_dst, QgsProject.instance()).transform(point)
geometries = json.loads(QgsGeometry.fromPointXY(point).asJson())
# write aoi geometry to file for masking output
aoi_geom = {
"type": "FeatureCollection",
"features": [
{
"type": "Feature",
"properties": {},
"geometry": geometries
}
]
}
aoi_file = os.path.join(os.path.dirname(os.path.realpath(__file__)), 'data', 'aoi.geojson')
with open(aoi_file, 'w') as filetowrite:
filetowrite.write(json.dumps(aoi_geom))
# Add the sqi layers to a VRT in case they don't match in resolution,
# and set proper output bounds
sqi_files = [pm_vrt, texture_vrt, drainage_vrt, rock_frag_vrt]
# in_vrt = tempfile.NamedTemporaryFile(suffix='.vrt').name
sqi_vrts = []
for i in range(len(sqi_files)):
f = tempfile.NamedTemporaryFile(suffix='.vrt').name
gdal.BuildVRT(f,
sqi_files[i],
bandList=[i + 1],
resolution='highest',
resampleAlg=gdal.GRA_NearestNeighbour,
outputBounds=self.aoi.get_aligned_output_bounds_deprecated(texture_vrt),
separate=True)
sqi_vrts.append(f)
slope_v = os.path.join(os.path.dirname(os.path.realpath(__file__)), 'data', 'slope.tif')
if not os.path.exists(slope_v):
slope_zip = os.path.join(os.path.dirname(os.path.realpath(__file__)), 'data', 'slope.zip')
slope_unzip = ZipFile(slope_zip)
slope_unzip.extractall(os.path.join(os.path.dirname(os.path.realpath(__file__)), 'data'))
slope_unzip.close()
log("Extracting slope file...")
else:
log("Slope.tif already exists")
in_files = [slope_v]
in_files.extend(sqi_vrts)
in_vrt = tempfile.NamedTemporaryFile(suffix='.vrt').name
log(u'Saving SQI input files to {}'.format(in_vrt))
gdal.BuildVRT(in_vrt,
in_files,
resolution='highest',
resampleAlg=gdal.GRA_NearestNeighbour,
outputBounds=self.aoi.get_aligned_output_bounds_deprecated(texture_vrt),
separate=True)
# sqi_band_nums = np.arange(len(lc_files)) + 6
sqi_worker = StartWorker(SoilQualityWorker,
'calculating soil quality index', soil_depth, in_vrt,
out_f )
if not sqi_worker.success:
QtWidgets.QMessageBox.critical(None, self.tr("Error"),
self.tr("Error calculating soil quality index."), None)
return
band_info = [BandInfo("Soil Quality Index (cm deep)", add_to_map=True, metadata={'depth': soil_depth})]
out_json = os.path.splitext(out_f)[0] + '.json'
create_local_json_metadata(out_json, out_f, band_info)
schema = BandInfoSchema()
for band_number in range(len(band_info)):
b = schema.dump(band_info[band_number])
if b['add_to_map']:
# The +1 is because band numbers start at 1, not zero
add_layer(out_f, band_number + 1, b)
def btn_calculate(self):
######################################################################
# Check that all needed output files are selected
if not self.output_file_layer.text():
QtWidgets.QMessageBox.information(None, self.tr("Error"),
self.tr("Choose an output file for the indicator layer."))
return
if not self.output_file_table.text():
QtWidgets.QMessageBox.information(None, self.tr("Error"),
self.tr("Choose an output file for the summary table."))
return
# Note that the super class has several tests in it - if they fail it
# returns False, which would mean this function should stop execution
# as well.
ret = super(DlgCalculateUrbanSummaryTable, self).btn_calculate()
if not ret:
return
######################################################################
# Check that all needed input layers are selected
if len(self.combo_layer_urban_series.layer_list) == 0:
QtWidgets.QMessageBox.critical(None, self.tr("Error"),
self.tr("You must add an urban series layer to your map before you can use the urban change summary tool."))
return
#######################################################################
# Check that the layers cover the full extent needed
if self.aoi.calc_frac_overlap(QgsGeometry.fromRect(self.combo_layer_urban_series.get_layer().extent())) < .99:
QtWidgets.QMessageBox.critical(None, self.tr("Error"),
self.tr("Area of interest is not entirely within the urban series layer."))
return
self.close()
#######################################################################
# Load all datasets to VRTs (to select only the needed bands)
band_infos = get_band_infos(self.combo_layer_urban_series.get_data_file())
urban_annual_band_indices = [i for i, bi in enumerate(band_infos) if bi['name'] == 'Urban']
urban_annual_band_indices.sort(key=lambda i: band_infos[i]['metadata']['year'])
urban_years = [bi['metadata']['year'] for bi in band_infos if bi['name'] == 'Urban']
urban_files = []
for i in urban_annual_band_indices:
f = tempfile.NamedTemporaryFile(suffix='.vrt').name
# Add once since band numbers don't start at zero
gdal.BuildVRT(f,
self.combo_layer_urban_series.get_data_file(),
bandList=[i + 1])
urban_files.append(f)
pop_annual_band_indices = [i for i, bi in enumerate(band_infos) if bi['name'] == 'Population']
pop_annual_band_indices.sort(key=lambda i: band_infos[i]['metadata']['year'])
pop_years = [bi['metadata']['year'] for bi in band_infos if bi['name'] == 'Population']
pop_files = []
for i in pop_annual_band_indices:
f = tempfile.NamedTemporaryFile(suffix='.vrt').name
# Add once since band numbers don't start at zero
gdal.BuildVRT(f,
self.combo_layer_urban_series.get_data_file(),
bandList=[i + 1])
pop_files.append(f)
assert (len(pop_files) == len(urban_files))
assert (urban_years == pop_years)
in_files = list(urban_files)
in_files.extend(pop_files)
urban_band_nums = np.arange(len(urban_files)) + 1
pop_band_nums = np.arange(len(pop_files)) + 1 + urban_band_nums.max()
# Remember the first value is an indication of whether dataset is
# wrapped across 180th meridian
wkts = self.aoi.meridian_split('layer', 'wkt', warn=False)[1]
bbs = self.aoi.get_aligned_output_bounds(urban_files[1])
######################################################################
# Process the wkts using a summary worker
output_indicator_tifs = []
output_indicator_json = self.output_file_layer.text()
for n in range(len(wkts)):
# Compute the pixel-aligned bounding box (slightly larger than
# aoi). Use this instead of croptocutline in gdal.Warp in order to
# keep the pixels aligned with the chosen productivity layer.
# Combines SDG 15.3.1 input raster into a VRT and crop to the AOI
indic_vrt = tempfile.NamedTemporaryFile(suffix='.vrt').name
log(u'Saving indicator VRT to: {}'.format(indic_vrt))
# The plus one is because band numbers start at 1, not zero
gdal.BuildVRT(indic_vrt,
in_files,
outputBounds=bbs[n],
resolution='highest',
resampleAlg=gdal.GRA_NearestNeighbour,
separate=True)
if len(wkts) > 1:
output_indicator_tif = os.path.splitext(output_indicator_json)[0] + '_{}.tif'.format(n)
else:
output_indicator_tif = os.path.splitext(output_indicator_json)[0] + '.tif'
output_indicator_tifs.append(output_indicator_tif)
log(u'Saving urban clipped files to {}'.format(output_indicator_tif))
geojson = json_geom_to_geojson(QgsGeometry.fromWkt(wkts[n]).asJson())
clip_worker = StartWorker(ClipWorker, 'masking layers (part {} of {})'.format(n + 1, len(wkts)),
indic_vrt, output_indicator_tif,
geojson, bbs[n])
if not clip_worker.success:
QtWidgets.QMessageBox.critical(None, self.tr("Error"),
self.tr("Error masking urban change input layers."))
return
######################################################################
# Calculate urban change table
log('Calculating summary table...')
urban_summary_worker = StartWorker(UrbanSummaryWorker,
'calculating summary table (part {} of {})'.format(n + 1, len(wkts)),
output_indicator_tif,
urban_band_nums, pop_band_nums, 9)
if not urban_summary_worker.success:
QtWidgets.QMessageBox.critical(None, self.tr("Error"),
self.tr("Error calculating urban change summary table."))
return
else:
if n == 0:
areas, \
populations = urban_summary_worker.get_return()
else:
these_areas, \
these_populations = urban_summary_worker.get_return()
areas = areas + these_areas
populations = populations + these_populations
make_summary_table(areas, populations, self.output_file_table.text())
# Add the indicator layers to the map
output_indicator_bandinfos = [BandInfo("Urban", add_to_map=True, metadata={'year': 2000}),
BandInfo("Urban", add_to_map=True, metadata={'year': 2005}),
BandInfo("Urban", add_to_map=True, metadata={'year': 2010}),
BandInfo("Urban", add_to_map=True, metadata={'year': 2015}),
BandInfo("Population", metadata={'year': 2000}),
BandInfo("Population", metadata={'year': 2005}),
BandInfo("Population", metadata={'year': 2010}),
BandInfo("Population", metadata={'year': 2015})]
if len(output_indicator_tifs) == 1:
output_file = output_indicator_tifs[0]
else:
output_file = os.path.splitext(output_indicator_json)[0] + '.vrt'
gdal.BuildVRT(output_file, output_indicator_tifs)
create_local_json_metadata(output_indicator_json, output_file,
output_indicator_bandinfos, metadata={'task_name': self.options_tab.task_name.text(),
'task_notes': self.options_tab.task_notes.toPlainText()})
schema = BandInfoSchema()
add_layer(output_file, 1, schema.dump(output_indicator_bandinfos[0]))
add_layer(output_file, 2, schema.dump(output_indicator_bandinfos[1]))
add_layer(output_file, 3, schema.dump(output_indicator_bandinfos[2]))
add_layer(output_file, 4, schema.dump(output_indicator_bandinfos[3]))
return True