def processListItem(self, nodes, item, sets=None): # special treatment for items 'proteic' and 'dna' if item =='proteic': newNodes = filter(lambda x, nodes=nodes: x.isProteic(), nodes) return self.level(newNodes) elif item == 'dna': newNodes = filter(lambda x, nodes=nodes: x.isDna(), nodes) return self.level(newNodes) else: return TreeNodeSetSelector.processListItem(self, nodes, item, sets=sets)
def processListItem(self, nodes, item, sets=None): # check for pre-defined filtering lists if item in self.residueList.keys(): names = self.residueList[item] newNodes = filter(lambda x, names=names, nodes=nodes: x.type in names, nodes) return self.level(newNodes) elif self.testSequence(item): # detect ambiguous residue sequences such as ASP vs Alanine-Serine-Proline # and all char in 'ARNDCEQGHILKMFPSTWYV' #print "testSequence: item=", item newNodes = self.matchSequence(nodes, item) #newNodes = FD['resSeq'](item, nodes) return newNodes else: return TreeNodeSetSelector.processListItem(self, nodes, item, sets=sets)
def __init__(self): TreeNodeSetSelector.__init__(self) self.level = ProteinSet
def __init__(self): TreeNodeSetSelector.__init__(self) self.level = ResidueSet