class tCmapFile_iter(unittest.TestCase):
input_file="file.cmap"
def setUp(self):
with open(self.input_file, "w"):
self.obj=CmapFile_iter(self.input_file)
def tearDown(self):
os.remove(self.input_file)
def test_next_emptyFile(self):
with self.assertRaises(StopIteration):
self.assertEqual(None, self.obj.next())
def test_next_badFileFormat(self):
with open(self.input_file, "w") as o_file:
o_file.write("1 2 3 4 5 6 7 8 9 10\n")
with self.assertRaises(Exception):
self.obj.next()
def test_next_skipsHeaders(self):
with open(self.input_file, "w") as o_file:
o_file.write("# this is a comment")
with self.assertRaises(StopIteration):
self.obj.next()
def test_next_twoLines(self):
expected=Mock(contig_id=1, contig_len=2.0, contig_site_count=3, label_id=4, channel="5", position=6.0, stdev=7.0, coverage=8.0, occurrences=9.0, snr_mean=10.0, snr_stdev=11.0, snr_count=12.0)
with open(self.input_file, "w") as o_file:
o_file.write("1 2 3 4 5 6 7 8 9 10 11 12")
self.assertEqual(expected, self.obj.next())
def setUp(self): with open(self.input_file, "w"): self.obj=CmapFile_iter(self.input_file)
