Пример #1
0
 def test_locate_sample_datasets(self):
     with self.assertRaises(OSError):
         FileFormat.locate("iris.tab", search_dirs=[os.path.dirname(__file__)])
     iris = FileFormat.locate("iris.tab", search_dirs=[get_sample_datasets_dir()])
     self.assertEqual(os.path.basename(iris), "iris.tab")
     # test extension adding
     iris = FileFormat.locate("iris", search_dirs=[get_sample_datasets_dir()])
     self.assertEqual(os.path.basename(iris), "iris.tab")
Пример #2
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 def test_locate_sample_datasets(self):
     with self.assertRaises(OSError):
         FileFormat.locate("iris.tab",
                           search_dirs=[os.path.dirname(__file__)])
     iris = FileFormat.locate("iris.tab",
                              search_dirs=[get_sample_datasets_dir()])
     self.assertEqual(os.path.basename(iris), "iris.tab")
     # test extension adding
     iris = FileFormat.locate("iris",
                              search_dirs=[get_sample_datasets_dir()])
     self.assertEqual(os.path.basename(iris), "iris.tab")
Пример #3
0
    def _relocate_recent_files(self):
        if self.recent_files and not self.recent_paths:
            # backward compatibility settings restore
            existing = [
                path for path in self.recent_files if os.path.exists(path)
            ]
            existing = [RecentPath(path, None, None) for path in existing]
            self.recent_paths.extend(existing)
            self.recent_files = []

        paths = [("sample-datasets", get_sample_datasets_dir())]
        basedir = self.workflowEnv().get("basedir", None)
        if basedir is not None:
            paths.append(("basedir", basedir))

        rec = []
        for recent in self.recent_paths:
            resolved = recent.resolve(paths)
            if resolved is not None:
                rec.append(RecentPath.create(resolved.abspath, paths))
            elif recent.search(paths) is not None:
                rec.append(RecentPath.create(recent.search(paths), paths))
            elif recent.prefix == "url-datasets":
                valid, _ = self.is_url_valid(recent.abspath)
                if valid:
                    rec.append(recent)

        self.recent_paths = rec
Пример #4
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    def browse_file(self, in_demos=False):
        if in_demos:
            start_file = get_sample_datasets_dir()
            if not os.path.exists(start_file):
                QMessageBox.information(
                    None,
                    "File",
                    "Cannot find the directory with documentation datasets",
                )
                return
        else:
            start_file = self.last_path() or os.path.expanduser("~/")

        readers = [
            f for f in FileFormat.formats
            if getattr(f, "read", None) and getattr(f, "EXTENSIONS", None)
        ]
        filename, reader, _ = open_filename_dialog(start_file, None, readers)
        if not filename:
            return
        self.add_path(filename)
        if reader is not None:
            self.recent_paths[0].file_format = reader.qualified_name()

        self.source = self.LOCAL_FILE
        self.load_data()
Пример #5
0
    def browseFile(self, in_demos=0):
        if in_demos:
            try:
                startfile = get_sample_datasets_dir()
            except AttributeError:
                startfile = ""
            if not startfile or not os.path.exists(startfile):
                widgetsdir = os.path.dirname(gui.__file__)
                orangedir = os.path.dirname(widgetsdir)
                startfile = os.path.join(orangedir, "doc", "datasets")
            if not startfile or not os.path.exists(startfile):
                d = os.getcwd()
                if os.path.basename(d) == "canvas":
                    d = os.path.dirname(d)
                startfile = os.path.join(os.path.dirname(d), "doc", "datasets")
            if not os.path.exists(startfile):
                QtGui.QMessageBox.information(None, "File",
                    "Cannot find the directory with example data sets")
                return
        else:
            if self.recent_files and self.recent_files[0] != "(none)":
                startfile = self.recent_files[0]
            else:
                startfile = os.path.expanduser("~/")

        filename = QtGui.QFileDialog.getOpenFileName(
            self, 'Open Orange Data File', startfile, self.dlgFormats)
        if not filename:
            return
        if filename in self.recent_files:
            self.recent_files.remove(filename)
        self.recent_files.insert(0, filename)
        self.set_file_list()
        self.open_file(self.recent_files[0])
Пример #6
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    def browse_file(self, in_demos=False):
        if in_demos:
            try:
                start_file = get_sample_datasets_dir()
            except AttributeError:
                start_file = ""
            if not start_file or not os.path.exists(start_file):
                widgets_dir = os.path.dirname(gui.__file__)
                orange_dir = os.path.dirname(widgets_dir)
                start_file = os.path.join(orange_dir, "doc", "datasets")
            if not start_file or not os.path.exists(start_file):
                d = os.getcwd()
                if os.path.basename(d) == "canvas":
                    d = os.path.dirname(d)
                start_file = os.path.join(os.path.dirname(d), "doc", "datasets")
            if not os.path.exists(start_file):
                QtGui.QMessageBox.information(
                    None, "File",
                    "Cannot find the directory with example data sets")
                return
        else:
            if self.recent_paths:
                start_file = self.recent_paths[0].abspath
            else:
                start_file = os.path.expanduser("~/")

        filename = QtGui.QFileDialog.getOpenFileName(
            self, 'Open Orange Data File', start_file, self.dlg_formats)
        if not filename:
            return

        self._add_path(filename)
        self.set_file_list()
        self.source = self.LOCAL_FILE
        self.load_data()
Пример #7
0
    def _relocate_recent_files(self):
        if self.recent_files and not self.recent_paths:
            # backward compatibility settings restore
            existing = [path for path in self.recent_files
                        if os.path.exists(path)]
            existing = [RecentPath(path, None, None) for path in existing]
            self.recent_paths.extend(existing)
            self.recent_files = []

        paths = [("sample-datasets", get_sample_datasets_dir())]
        basedir = self.workflowEnv().get("basedir", None)
        if basedir is not None:
            paths.append(("basedir", basedir))

        rec = []
        for recent in self.recent_paths:
            resolved = recent.resolve(paths)
            if resolved is not None:
                rec.append(RecentPath.create(resolved.abspath, paths))
            elif recent.search(paths) is not None:
                rec.append(RecentPath.create(recent.search(paths), paths))
            elif recent.prefix == "url-datasets":
                valid, _ = self.is_url_valid(recent.abspath)
                if valid:
                    rec.append(recent)

        self.recent_paths = rec
Пример #8
0
    def browse_files(self, in_demos=False):
        if in_demos:
            start_file = get_sample_datasets_dir()
            if not os.path.exists(start_file):
                QMessageBox.information(
                    None, "File",
                    "Cannot find the directory with documentation data sets")
                return
        else:
            start_file = self.last_path() or os.path.expanduser("~/")

        filenames = QFileDialog.getOpenFileNames(self,
                                                 'Open Multiple Data Files',
                                                 start_file, self.dlg_formats)

        if isinstance(filenames, tuple):  # has a file description
            filenames = filenames[0]

        if not filenames:
            return

        for f in filenames:
            self.add_path(f)
            self.lb.addItem(f)

        self._update_sheet_combo()
        self.load_data()
Пример #9
0
 def _add_path(self, filename):
     searchpaths = [("sample-datasets", get_sample_datasets_dir())]
     basedir = self.workflowEnv().get("basedir", None)
     if basedir is not None:
         searchpaths.append(("basedir", basedir))
     recent = RecentPath.create(filename, searchpaths)
     if recent in self.recent_paths:
         self.recent_paths.remove(recent)
     self.recent_paths.insert(0, recent)
Пример #10
0
 def _add_path(self, filename):
     searchpaths = [("sample-datasets", get_sample_datasets_dir())]
     basedir = self.workflowEnv().get("basedir", None)
     if basedir is not None:
         searchpaths.append(("basedir", basedir))
     recent = RecentPath.create(filename, searchpaths)
     if recent in self.recent_paths:
         self.recent_paths.remove(recent)
     self.recent_paths.insert(0, recent)
Пример #11
0
    def browse_file(self, in_demos=0):
        if in_demos:
            try:
                start_file = get_sample_datasets_dir()
            except AttributeError:
                start_file = ""
            if not start_file or not os.path.exists(start_file):
                widgets_dir = os.path.dirname(gui.__file__)
                orange_dir = os.path.dirname(widgets_dir)
                start_file = os.path.join(orange_dir, "doc", "datasets")
            if not start_file or not os.path.exists(start_file):
                d = os.getcwd()
                if os.path.basename(d) == "canvas":
                    d = os.path.dirname(d)
                start_file = os.path.join(os.path.dirname(d), "doc", "datasets")
            if not os.path.exists(start_file):
                QtGui.QMessageBox.information(
                    None, "File",
                    "Cannot find the directory with example data sets")
                return
        else:
            if self.recent_paths:
                start_file = self.recent_paths[0].abspath
            else:
                start_file = os.path.expanduser("~/")

        filename = QtGui.QFileDialog.getOpenFileName(
            self, 'Open Orange Data File', start_file, self.dlgFormats)
        if not filename:
            return

        searchpaths = [("sample-datasets", get_sample_datasets_dir())]
        basedir = self.workflowEnv().get("basedir", None)
        if basedir is not None:
            searchpaths.append(("basedir", basedir))

        recent = RecentPath.create(filename, searchpaths)

        if recent in self.recent_paths:
            self.recent_paths.remove(recent)

        self.recent_paths.insert(0, recent)
        self.set_file_list()
        self.open_file(self.recent_paths[0].abspath)
Пример #12
0
    def _relocate_recent_files(self):
        paths = [("sample-datasets", get_sample_datasets_dir())]
        basedir = self.workflowEnv().get("basedir", None)
        if basedir is not None:
            paths.append(("basedir", basedir))

        rec = []
        for recent in self.recent_paths:
            resolved = recent.resolve(paths)
            if resolved is not None:
                rec.append(RecentPath.create(resolved.abspath, paths))
            elif recent.search(paths) is not None:
                rec.append(RecentPath.create(recent.search(paths), paths))
        self.recent_paths = rec
Пример #13
0
    def _relocate_recent_files(self):
        paths = [("sample-datasets", get_sample_datasets_dir())]
        basedir = self.workflowEnv().get("basedir", None)
        if basedir is not None:
            paths.append(("basedir", basedir))

        rec = []
        for recent in self.recent_paths:
            resolved = recent.resolve(paths)
            if resolved is not None:
                rec.append(RecentPath.create(resolved.abspath, paths))
            elif recent.search(paths) is not None:
                rec.append(RecentPath.create(recent.search(paths), paths))
        self.recent_paths = rec
Пример #14
0
    def browse_file(self, in_demos=False):
        if in_demos:
            start_file = get_sample_datasets_dir()
            if not os.path.exists(start_file):
                QMessageBox.information(
                    None, "File",
                    "Cannot find the directory with documentation data sets")
                return
        else:
            start_file = self.last_path() or os.path.expanduser("~/")

        filename, _ = QFileDialog.getOpenFileName(
            self, 'Open Orange Data File', start_file, dialog_formats())
        if not filename:
            return
        self.add_path(filename)
        self.source = self.LOCAL_FILE
        self.load_data()
Пример #15
0
    def browse_file(self, in_demos=False):
        if in_demos:
            start_file = get_sample_datasets_dir()
            if not os.path.exists(start_file):
                QMessageBox.information(None, "文件", "无法找到文件")
                return
        else:
            start_file = self.last_path() or os.path.expanduser("~/")

        filename, reader, _ = open_filename_dialog(start_file, None,
                                                   self.available_readers)
        if not filename:
            return
        self.add_path(filename)
        if reader is not None:
            self.recent_paths[0].file_format = reader.qualified_name()

        self.source = self.LOCAL_FILE
        self.load_data()
Пример #16
0
    def browse_file(self, in_demos=False):
        if in_demos:
            start_file = get_sample_datasets_dir()
            if not os.path.exists(start_file):
                QMessageBox.information(
                    None, "File",
                    "Cannot find the directory with documentation data sets")
                return
        else:
            start_file = self.last_path() or os.path.expanduser("~/")

        filename, _ = QFileDialog.getOpenFileName(self,
                                                  'Open Orange Data File',
                                                  start_file, self.dlg_formats)
        if not filename:
            return
        self.add_path(filename)
        self.source = self.LOCAL_FILE
        self.load_data()
Пример #17
0
    def browse_file(self, in_demos=False):
        if in_demos:
            start_file = get_sample_datasets_dir()
            if not os.path.exists(start_file):
                QMessageBox.information(
                    None, "File",
                    "Cannot find the directory with documentation datasets")
                return
        else:
            start_file = self.last_path() or os.path.expanduser("~/")

        readers = [f for f in FileFormat.formats
                   if getattr(f, 'read', None) and getattr(f, "EXTENSIONS", None)]
        filename, reader, _ = open_filename_dialog(start_file, None, readers)
        if not filename:
            return
        self.add_path(filename)
        if reader is not None:
            self.recent_paths[0].file_format = reader.qualified_name()

        self.source = self.LOCAL_FILE
        self.load_data()
Пример #18
0
    def browse_file(self, in_demos=False):
        if in_demos:
            try:
                start_file = get_sample_datasets_dir()
            except AttributeError:
                start_file = ""
            if not start_file or not os.path.exists(start_file):
                widgets_dir = os.path.dirname(gui.__file__)
                orange_dir = os.path.dirname(widgets_dir)
                start_file = os.path.join(orange_dir, "doc", "datasets")
            if not start_file or not os.path.exists(start_file):
                d = os.getcwd()
                if os.path.basename(d) == "canvas":
                    d = os.path.dirname(d)
                start_file = os.path.join(os.path.dirname(d), "doc",
                                          "datasets")
            if not os.path.exists(start_file):
                QtGui.QMessageBox.information(
                    None, "File",
                    "Cannot find the directory with example data sets")
                return
        else:
            if self.recent_paths:
                start_file = self.recent_paths[0].abspath
            else:
                start_file = os.path.expanduser("~/")

        filename = QtGui.QFileDialog.getOpenFileName(self,
                                                     'Open Orange Data File',
                                                     start_file,
                                                     self.dlg_formats)
        if not filename:
            return

        self._add_path(filename)
        self.set_file_list()
        self.source = self.LOCAL_FILE
        self.load_data()
Пример #19
0
    def browse_file(self, in_demos=0):
        if in_demos:
            try:
                start_file = get_sample_datasets_dir()
            except AttributeError:
                start_file = ""
            if not start_file or not os.path.exists(start_file):
                widgets_dir = os.path.dirname(gui.__file__)
                orange_dir = os.path.dirname(widgets_dir)
                start_file = os.path.join(orange_dir, "doc", "datasets")
            if not start_file or not os.path.exists(start_file):
                d = os.getcwd()
                if os.path.basename(d) == "canvas":
                    d = os.path.dirname(d)
                start_file = os.path.join(os.path.dirname(d), "doc",
                                          "datasets")
            if not os.path.exists(start_file):
                QtGui.QMessageBox.information(
                    None, "File",
                    "Cannot find the directory with example data sets")
                return
        else:
            if self.recent_files and self.recent_files[0] != "(none)":
                start_file = self.recent_files[0]
            else:
                start_file = os.path.expanduser("~/")

        filename = QtGui.QFileDialog.getOpenFileName(self,
                                                     'Open Orange Data File',
                                                     start_file,
                                                     self.dlgFormats)
        if not filename:
            return
        if filename in self.recent_files:
            self.recent_files.remove(filename)
        self.recent_files.insert(0, filename)
        self.set_file_list()
        self.open_file(self.recent_files[0])
Пример #20
0
class OWFile(widget.OWWidget, RecentPathsWComboMixin):
    name = "File"
    id = "orange.widgets.data.file"
    description = "Read a data from an input file or network" \
                  "and send the data table to the output."
    icon = "icons/File.svg"
    priority = 10
    category = "Data"
    keywords = ["data", "file", "load", "read"]
    outputs = [
        widget.OutputSignal(
            "Data",
            Table,
            doc="Attribute-valued data set read from the input file.")
    ]

    want_main_area = False
    resizing_enabled = False

    SEARCH_PATHS = [("sample-datasets", get_sample_datasets_dir())]

    LOCAL_FILE, URL = range(2)

    settingsHandler = XlsContextHandler()

    # Overload RecentPathsWidgetMixin.recent_paths to set defaults
    recent_paths = Setting([
        RecentPath("", "sample-datasets", "iris.tab"),
        RecentPath("", "sample-datasets", "titanic.tab"),
        RecentPath("", "sample-datasets", "housing.tab"),
    ])
    recent_urls = Setting([])
    source = Setting(LOCAL_FILE)
    xls_sheet = ContextSetting("")
    sheet_names = Setting({})
    url = Setting("")

    dlg_formats = ("All readable files ({});;".format(
        '*' + ' *'.join(FileFormat.readers.keys())) + ";;".join(
            "{} (*{})".format(f.DESCRIPTION, ' *'.join(f.EXTENSIONS))
            for f in sorted(set(FileFormat.readers.values()),
                            key=list(FileFormat.readers.values()).index)))

    def __init__(self):
        super().__init__()
        RecentPathsWComboMixin.__init__(self)
        self.domain = None
        self.data = None
        self.loaded_file = ""

        layout = QtGui.QGridLayout()
        gui.widgetBox(self.controlArea, margin=0, orientation=layout)
        vbox = gui.radioButtons(None,
                                self,
                                "source",
                                box=True,
                                addSpace=True,
                                callback=self.load_data,
                                addToLayout=False)

        rb_button = gui.appendRadioButton(vbox, "File", addToLayout=False)
        layout.addWidget(rb_button, 0, 0, QtCore.Qt.AlignVCenter)

        box = gui.hBox(None, addToLayout=False, margin=0)
        box.setSizePolicy(Policy.MinimumExpanding, Policy.Fixed)
        self.file_combo.setSizePolicy(Policy.MinimumExpanding, Policy.Fixed)
        self.file_combo.activated[int].connect(self.select_file)
        box.layout().addWidget(self.file_combo)
        layout.addWidget(box, 0, 1)

        file_button = gui.button(None,
                                 self,
                                 '...',
                                 callback=self.browse_file,
                                 autoDefault=False)
        file_button.setIcon(self.style().standardIcon(
            QtGui.QStyle.SP_DirOpenIcon))
        file_button.setSizePolicy(Policy.Maximum, Policy.Fixed)
        layout.addWidget(file_button, 0, 2)

        reload_button = gui.button(None,
                                   self,
                                   "Reload",
                                   callback=self.reload,
                                   autoDefault=False)
        reload_button.setIcon(self.style().standardIcon(
            QtGui.QStyle.SP_BrowserReload))
        reload_button.setSizePolicy(Policy.Fixed, Policy.Fixed)
        layout.addWidget(reload_button, 0, 3)

        self.sheet_box = gui.hBox(None, addToLayout=False, margin=0)
        self.sheet_combo = gui.comboBox(None,
                                        self,
                                        "xls_sheet",
                                        callback=self.load_data,
                                        sendSelectedValue=True)
        self.sheet_combo.setSizePolicy(Policy.MinimumExpanding, Policy.Fixed)
        self.sheet_label = QtGui.QLabel()
        self.sheet_label.setText('Sheet')
        self.sheet_label.setSizePolicy(Policy.MinimumExpanding, Policy.Fixed)
        self.sheet_box.layout().addWidget(self.sheet_label,
                                          QtCore.Qt.AlignLeft)
        self.sheet_box.layout().addWidget(self.sheet_combo,
                                          QtCore.Qt.AlignVCenter)
        layout.addWidget(self.sheet_box, 2, 1)
        self.sheet_box.hide()

        rb_button = gui.appendRadioButton(vbox, "URL", addToLayout=False)
        layout.addWidget(rb_button, 3, 0, QtCore.Qt.AlignVCenter)

        self.url_combo = url_combo = QtGui.QComboBox()
        url_model = NamedURLModel(self.sheet_names)
        url_model.wrap(self.recent_urls)
        url_combo.setModel(url_model)
        url_combo.setSizePolicy(Policy.MinimumExpanding, Policy.Fixed)
        url_combo.setMaximumWidth(500)
        url_combo.setEditable(True)
        url_combo.setInsertPolicy(url_combo.InsertAtTop)
        url_edit = url_combo.lineEdit()
        l, t, r, b = url_edit.getTextMargins()
        url_edit.setTextMargins(l + 5, t, r, b)
        layout.addWidget(url_combo, 3, 1, 3, 3)
        url_combo.activated.connect(self._url_set)

        box = gui.vBox(self.controlArea, "Info")
        self.info = gui.widgetLabel(box, 'No data loaded.')
        self.warnings = gui.widgetLabel(box, '')

        box = gui.hBox(self.controlArea)
        gui.button(box,
                   self,
                   "Browse documentation data sets",
                   callback=lambda: self.browse_file(True),
                   autoDefault=False)
        gui.rubber(box)
        box.layout().addWidget(self.report_button)
        self.report_button.setFixedWidth(170)

        # Set word wrap, so long warnings won't expand the widget
        self.warnings.setWordWrap(True)
        self.warnings.setSizePolicy(Policy.Ignored, Policy.MinimumExpanding)

        self.set_file_list()
        if self.last_path() is not None:
            self.fill_sheet_combo(self.last_path())
        # Must not call open_file from within __init__. open_file
        # explicitly re-enters the event loop (by a progress bar)
        QtCore.QTimer.singleShot(0, self.load_data)

    def reload(self):
        if self.recent_paths:
            basename = self.file_combo.currentText()
            path = self.recent_paths[0]
            if basename in [path.relpath, path.basename]:
                self.source = self.LOCAL_FILE
                if self.is_multisheet_excel(path.abspath):
                    self.fill_sheet_combo(path.abspath)
                return self.load_data()
        self.select_file(len(self.recent_paths) + 1)

    def select_file(self, n):
        if n < len(self.recent_paths):
            super().select_file(n)
            self.fill_sheet_combo(self.last_path())
        # TODO: This is weird. Has it remained here from "Browse data sets"
        # or from when this combo was editable? A `n` this large can come from
        # `reload`, but ... how?!
        elif n:
            path = self.file_combo.currentText()
            if os.path.exists(path):
                self.add_path(path)
            else:
                self.info.setText('Data was not loaded:')
                self.warnings.setText("File {} does not exist".format(path))
                self.file_combo.removeItem(n)
                self.file_combo.lineEdit().setText(path)
                return

        if self.recent_paths:
            self.source = self.LOCAL_FILE
            self.load_data()
            self.set_file_list()

    def _url_set(self):
        self.source = self.URL
        self.load_data()

    def browse_file(self, in_demos=False):
        if in_demos:
            start_file = get_sample_datasets_dir()
            if not os.path.exists(start_file):
                QtGui.QMessageBox.information(
                    None, "File",
                    "Cannot find the directory with documentation data sets")
                return
        else:
            start_file = self.last_path() or os.path.expanduser("~/")

        filename = QtGui.QFileDialog.getOpenFileName(self,
                                                     'Open Orange Data File',
                                                     start_file,
                                                     self.dlg_formats)
        if not filename:
            return

        self.add_path(filename)
        self.source = self.LOCAL_FILE
        self.fill_sheet_combo(filename)
        self.load_data()

    def fill_sheet_combo(self, path):
        if os.path.exists(path) and self.is_multisheet_excel(path):
            self.closeContext()
            self.sheet_combo.clear()
            self.sheet_box.show()
            book = open_workbook(path)
            sheet_names = [
                str(book.sheet_by_index(i).name) for i in range(book.nsheets)
            ]
            self.sheet_combo.addItems(sheet_names)
            self.openContext(path, sheet_names)
        else:
            self.sheet_box.hide()

    @staticmethod
    def is_multisheet_excel(fn):
        try:
            return open_workbook(fn).nsheets > 1
        except XLRDError:
            return False

    # Open a file, create data from it and send it over the data channel
    def load_data(self):
        def load(method, fn):
            with catch_warnings(record=True) as warnings:
                data = method(fn)
                self.warning(33,
                             warnings[-1].message.args[0] if warnings else '')
            return data, fn

        def load_from_file():
            fn = self.last_path()
            if not fn:
                return None, ""
            if not os.path.exists(fn):
                dir_name, basename = os.path.split(fn)
                if os.path.exists(os.path.join(".", basename)):
                    fn = os.path.join(".", basename)
                    self.information(
                        "Loading '{}' from the current directory.".format(
                            basename))
            if self.is_multisheet_excel(fn):
                data = ExcelFormat.read_file(fn + ':' + self.xls_sheet)
                if data:
                    return data, fn

            try:
                return load(Table.from_file, fn)
            except Exception as exc:
                self.warnings.setText(str(exc))
                # Let us not remove from recent files: user may fix them
                raise

        def load_from_network():
            combo = self.url_combo
            model = combo.model()
            # combo.currentText does not work when the widget is initialized
            url = model.data(model.index(combo.currentIndex()),
                             QtCore.Qt.EditRole)
            if not url:
                return None, ""
            elif "://" not in url:
                url = "http://" + url
            try:
                data, url = load(Table.from_url, url)
            except:
                self.warnings.setText(
                    "URL '{}' does not contain valid data".format(url))
                # Don't remove from recent_urls:
                # resource may reappear, or the user mistyped it
                # and would like to retrieve it from history and fix it.
                raise
            combo.clearFocus()
            if "://docs.google.com/spreadsheets" in url:
                model.add_name(url, data.name)
                self.url = \
                    "{} from {}".format(data.name.replace("- Sheet1", ""), url)
                combo.lineEdit().setPlaceholderText(self.url)
                return data, data.name
            else:
                self.url = url
                return data, url

        self.warning()
        self.information()

        try:
            loader = [load_from_file, load_from_network][self.source]
            self.data, self.loaded_file = loader()
        except:
            self.info.setText("Data was not loaded:")
            self.data = None
            self.loaded_file = ""
            return
        else:
            self.warnings.setText("")

        data = self.data
        if data is None:
            self.send("Data", None)
            self.info.setText("No data loaded")
            return

        domain = data.domain
        text = "{} instance(s), {} feature(s), {} meta attribute(s)".format(
            len(data), len(domain.attributes), len(domain.metas))
        if domain.has_continuous_class:
            text += "\nRegression; numerical class."
        elif domain.has_discrete_class:
            text += "\nClassification; discrete class with {} values.".format(
                len(domain.class_var.values))
        elif data.domain.class_vars:
            text += "\nMulti-target; {} target variables.".format(
                len(data.domain.class_vars))
        else:
            text += "\nData has no target variable."
        if 'Timestamp' in data.domain:
            # Google Forms uses this header to timestamp responses
            text += '\n\nFirst entry: {}\nLast entry: {}'.format(
                data[0, 'Timestamp'], data[-1, 'Timestamp'])
        self.info.setText(text)

        add_origin(data, self.loaded_file)
        self.send("Data", data)

    def get_widget_name_extension(self):
        _, name = os.path.split(self.loaded_file)
        return os.path.splitext(name)[0]

    def send_report(self):
        def get_ext_name(filename):
            try:
                return FileFormat.names[os.path.splitext(filename)[1]]
            except KeyError:
                return "unknown"

        if self.data is None:
            self.report_paragraph("File", "No file.")
            return

        if self.source == self.LOCAL_FILE:
            home = os.path.expanduser("~")
            if self.loaded_file.startswith(home):
                # os.path.join does not like ~
                name = "~/" + \
                       self.loaded_file[len(home):].lstrip("/").lstrip("\\")
            else:
                name = self.loaded_file
            if self.sheet_combo.isVisible():
                name += " ({})".format(self.sheet_combo.currentText())
            self.report_items("File", [("File name", name),
                                       ("Format", get_ext_name(name))])
        else:
            self.report_items("Data", [("Resource", self.url),
                                       ("Format", get_ext_name(self.url))])

        self.report_data("Data", self.data)
Пример #21
0
class OWFile(widget.OWWidget, RecentPathsWComboMixin):
    name = "File"
    id = "orange.widgets.data.file"
    description = "Read data from an input file or network " \
                  "and send a data table to the output."
    icon = "icons/File.svg"
    priority = 10
    category = "Data"
    keywords = ["file", "load", "read", "open"]

    class Outputs:
        data = Output("Data",
                      Table,
                      doc="Attribute-valued dataset read from the input file.")

    want_main_area = False

    SEARCH_PATHS = [("sample-datasets", get_sample_datasets_dir())]
    SIZE_LIMIT = 1e7
    LOCAL_FILE, URL = range(2)

    settingsHandler = PerfectDomainContextHandler(
        match_values=PerfectDomainContextHandler.MATCH_VALUES_ALL)

    # pylint seems to want declarations separated from definitions
    recent_paths: List[RecentPath]
    recent_urls: List[str]
    variables: list

    # Overload RecentPathsWidgetMixin.recent_paths to set defaults
    recent_paths = Setting([
        RecentPath("", "sample-datasets", "iris.tab"),
        RecentPath("", "sample-datasets", "titanic.tab"),
        RecentPath("", "sample-datasets", "housing.tab"),
        RecentPath("", "sample-datasets", "heart_disease.tab"),
        RecentPath("", "sample-datasets", "brown-selected.tab"),
        RecentPath("", "sample-datasets", "zoo.tab"),
    ])
    recent_urls = Setting([])
    source = Setting(LOCAL_FILE)
    xls_sheet = ContextSetting("")
    sheet_names = Setting({})
    url = Setting("")

    variables = ContextSetting([])

    domain_editor = SettingProvider(DomainEditor)

    class Warning(widget.OWWidget.Warning):
        file_too_big = widget.Msg(
            "The file is too large to load automatically."
            " Press Reload to load.")
        load_warning = widget.Msg("Read warning:\n{}")

    class Error(widget.OWWidget.Error):
        file_not_found = widget.Msg("File not found.")
        missing_reader = widget.Msg("Missing reader.")
        sheet_error = widget.Msg("Error listing available sheets.")
        unknown = widget.Msg("Read error:\n{}")

    class NoFileSelected:
        pass

    UserAdviceMessages = [
        widget.Message(
            "Use CSV File Import widget for advanced options "
            "for comma-separated files", "use-csv-file-import"),
        widget.Message(
            "This widget loads only tabular data. Use other widgets to load "
            "other data types like models, distance matrices and networks.",
            "other-data-types")
    ]

    def __init__(self):
        super().__init__()
        RecentPathsWComboMixin.__init__(self)
        self.domain = None
        self.data = None
        self.loaded_file = ""
        self.reader = None

        layout = QGridLayout()
        gui.widgetBox(self.controlArea, margin=0, orientation=layout)
        vbox = gui.radioButtons(None,
                                self,
                                "source",
                                box=True,
                                addSpace=True,
                                callback=self.load_data,
                                addToLayout=False)

        rb_button = gui.appendRadioButton(vbox, "File:", addToLayout=False)
        layout.addWidget(rb_button, 0, 0, Qt.AlignVCenter)

        box = gui.hBox(None, addToLayout=False, margin=0)
        box.setSizePolicy(Policy.MinimumExpanding, Policy.Fixed)
        self.file_combo.setSizePolicy(Policy.MinimumExpanding, Policy.Fixed)
        self.file_combo.activated[int].connect(self.select_file)
        box.layout().addWidget(self.file_combo)
        layout.addWidget(box, 0, 1)

        file_button = gui.button(None,
                                 self,
                                 '...',
                                 callback=self.browse_file,
                                 autoDefault=False)
        file_button.setIcon(self.style().standardIcon(QStyle.SP_DirOpenIcon))
        file_button.setSizePolicy(Policy.Maximum, Policy.Fixed)
        layout.addWidget(file_button, 0, 2)

        reload_button = gui.button(None,
                                   self,
                                   "Reload",
                                   callback=self.load_data,
                                   autoDefault=False)
        reload_button.setIcon(self.style().standardIcon(
            QStyle.SP_BrowserReload))
        reload_button.setSizePolicy(Policy.Fixed, Policy.Fixed)
        layout.addWidget(reload_button, 0, 3)

        self.sheet_box = gui.hBox(None, addToLayout=False, margin=0)
        self.sheet_combo = gui.comboBox(
            None,
            self,
            "xls_sheet",
            callback=self.select_sheet,
            sendSelectedValue=True,
        )
        self.sheet_combo.setSizePolicy(Policy.MinimumExpanding, Policy.Fixed)
        self.sheet_label = QLabel()
        self.sheet_label.setText('Sheet')
        self.sheet_label.setSizePolicy(Policy.MinimumExpanding, Policy.Fixed)
        self.sheet_box.layout().addWidget(self.sheet_label, Qt.AlignLeft)
        self.sheet_box.layout().addWidget(self.sheet_combo, Qt.AlignVCenter)
        layout.addWidget(self.sheet_box, 2, 1)
        self.sheet_box.hide()

        rb_button = gui.appendRadioButton(vbox, "URL:", addToLayout=False)
        layout.addWidget(rb_button, 3, 0, Qt.AlignVCenter)

        self.url_combo = url_combo = QComboBox()
        url_model = NamedURLModel(self.sheet_names)
        url_model.wrap(self.recent_urls)
        url_combo.setLineEdit(LineEditSelectOnFocus())
        url_combo.setModel(url_model)
        url_combo.setSizePolicy(Policy.Ignored, Policy.Fixed)
        url_combo.setEditable(True)
        url_combo.setInsertPolicy(url_combo.InsertAtTop)
        url_edit = url_combo.lineEdit()
        l, t, r, b = url_edit.getTextMargins()
        url_edit.setTextMargins(l + 5, t, r, b)
        layout.addWidget(url_combo, 3, 1, 3, 3)
        url_combo.activated.connect(self._url_set)
        # whit completer we set that combo box is case sensitive when
        # matching the history
        completer = QCompleter()
        completer.setCaseSensitivity(Qt.CaseSensitive)
        url_combo.setCompleter(completer)

        box = gui.vBox(self.controlArea, "Info")
        self.infolabel = gui.widgetLabel(box, 'No data loaded.')
        self.warnings = gui.widgetLabel(box, '')

        box = gui.widgetBox(self.controlArea, "Columns (Double click to edit)")
        self.domain_editor = DomainEditor(self)
        self.editor_model = self.domain_editor.model()
        box.layout().addWidget(self.domain_editor)

        box = gui.hBox(self.controlArea)
        gui.button(box,
                   self,
                   "Browse documentation datasets",
                   callback=lambda: self.browse_file(True),
                   autoDefault=False)
        gui.rubber(box)

        gui.button(box, self, "Reset", callback=self.reset_domain_edit)
        self.apply_button = gui.button(box,
                                       self,
                                       "Apply",
                                       callback=self.apply_domain_edit)
        self.apply_button.setEnabled(False)
        self.apply_button.setFixedWidth(170)
        self.editor_model.dataChanged.connect(
            lambda: self.apply_button.setEnabled(True))

        self.set_file_list()
        # Must not call open_file from within __init__. open_file
        # explicitly re-enters the event loop (by a progress bar)

        self.setAcceptDrops(True)

        if self.source == self.LOCAL_FILE:
            last_path = self.last_path()
            if last_path and os.path.exists(last_path) and \
                    os.path.getsize(last_path) > self.SIZE_LIMIT:
                self.Warning.file_too_big()
                return

        QTimer.singleShot(0, self.load_data)

    @staticmethod
    def sizeHint():
        return QSize(600, 550)

    def select_file(self, n):
        assert n < len(self.recent_paths)
        super().select_file(n)
        if self.recent_paths:
            self.source = self.LOCAL_FILE
            self.load_data()
            self.set_file_list()

    def select_sheet(self):
        self.recent_paths[0].sheet = self.sheet_combo.currentText()
        self.load_data()

    def _url_set(self):
        url = self.url_combo.currentText()
        pos = self.recent_urls.index(url)
        url = url.strip()

        if not urlparse(url).scheme:
            url = 'http://' + url
            self.url_combo.setItemText(pos, url)
            self.recent_urls[pos] = url

        self.source = self.URL
        self.load_data()

    def browse_file(self, in_demos=False):
        if in_demos:
            start_file = get_sample_datasets_dir()
            if not os.path.exists(start_file):
                QMessageBox.information(
                    None, "File",
                    "Cannot find the directory with documentation datasets")
                return
        else:
            start_file = self.last_path() or os.path.expanduser("~/")

        readers = [
            f for f in FileFormat.formats
            if getattr(f, 'read', None) and getattr(f, "EXTENSIONS", None)
        ]
        filename, reader, _ = open_filename_dialog(start_file, None, readers)
        if not filename:
            return
        self.add_path(filename)
        if reader is not None:
            self.recent_paths[0].file_format = reader.qualified_name()

        self.source = self.LOCAL_FILE
        self.load_data()

    # Open a file, create data from it and send it over the data channel
    def load_data(self):
        # We need to catch any exception type since anything can happen in
        # file readers
        self.closeContext()
        self.domain_editor.set_domain(None)
        self.apply_button.setEnabled(False)
        self.clear_messages()
        self.set_file_list()

        error = self._try_load()
        if error:
            error()
            self.data = None
            self.sheet_box.hide()
            self.Outputs.data.send(None)
            self.infolabel.setText("No data.")

    def _try_load(self):
        # pylint: disable=broad-except
        if self.last_path() and not os.path.exists(self.last_path()):
            return self.Error.file_not_found

        try:
            self.reader = self._get_reader()
            assert self.reader is not None
        except Exception:
            return self.Error.missing_reader

        if self.reader is self.NoFileSelected:
            self.Outputs.data.send(None)
            return None

        try:
            self._update_sheet_combo()
        except Exception:
            return self.Error.sheet_error

        with catch_warnings(record=True) as warnings:
            try:
                data = self.reader.read()
            except Exception as ex:
                log.exception(ex)
                return lambda x=ex: self.Error.unknown(str(x))
            if warnings:
                self.Warning.load_warning(warnings[-1].message.args[0])

        self.infolabel.setText(self._describe(data))

        self.loaded_file = self.last_path()
        add_origin(data, self.loaded_file)
        self.data = data
        self.openContext(data.domain)
        self.apply_domain_edit()  # sends data
        return None

    def _get_reader(self) -> FileFormat:
        if self.source == self.LOCAL_FILE:
            path = self.last_path()
            if path is None:
                return self.NoFileSelected
            if self.recent_paths and self.recent_paths[0].file_format:
                qname = self.recent_paths[0].file_format
                reader_class = class_from_qualified_name(qname)
                reader = reader_class(path)
            else:
                reader = FileFormat.get_reader(path)
            if self.recent_paths and self.recent_paths[0].sheet:
                reader.select_sheet(self.recent_paths[0].sheet)
            return reader
        else:
            url = self.url_combo.currentText().strip()
            if url:
                return UrlReader(url)
            else:
                return self.NoFileSelected

    def _update_sheet_combo(self):
        if len(self.reader.sheets) < 2:
            self.sheet_box.hide()
            self.reader.select_sheet(None)
            return

        self.sheet_combo.clear()
        self.sheet_combo.addItems(self.reader.sheets)
        self._select_active_sheet()
        self.sheet_box.show()

    def _select_active_sheet(self):
        if self.reader.sheet:
            try:
                idx = self.reader.sheets.index(self.reader.sheet)
                self.sheet_combo.setCurrentIndex(idx)
            except ValueError:
                # Requested sheet does not exist in this file
                self.reader.select_sheet(None)
        else:
            self.sheet_combo.setCurrentIndex(0)

    @staticmethod
    def _describe(table):
        def missing_prop(prop):
            if prop:
                return f"({prop * 100:.1f}% missing values)"
            else:
                return "(no missing values)"

        domain = table.domain
        text = ""

        attrs = getattr(table, "attributes", {})
        descs = [
            attrs[desc] for desc in ("Name", "Description") if desc in attrs
        ]
        if len(descs) == 2:
            descs[0] = f"<b>{descs[0]}</b>"
        if descs:
            text += f"<p>{'<br/>'.join(descs)}</p>"

        text += f"<p>{len(table)} instance(s)"

        missing_in_attr = missing_prop(table.has_missing_attribute()
                                       and table.get_nan_frequency_attribute())
        missing_in_class = missing_prop(table.has_missing_class()
                                        and table.get_nan_frequency_class())
        text += f"<br/>{len(domain.attributes)} feature(s) {missing_in_attr}"
        if domain.has_continuous_class:
            text += f"<br/>Regression; numerical class {missing_in_class}"
        elif domain.has_discrete_class:
            text += "<br/>Classification; categorical class " \
                f"with {len(domain.class_var.values)} values {missing_in_class}"
        elif table.domain.class_vars:
            text += "<br/>Multi-target; " \
                f"{len(table.domain.class_vars)} target variables " \
                f"{missing_in_class}"
        else:
            text += "<br/>Data has no target variable."
        text += f"<br/>{len(domain.metas)} meta attribute(s)"
        text += "</p>"

        if 'Timestamp' in table.domain:
            # Google Forms uses this header to timestamp responses
            text += f"<p>First entry: {table[0, 'Timestamp']}<br/>" \
                f"Last entry: {table[-1, 'Timestamp']}</p>"
        return text

    def storeSpecificSettings(self):
        self.current_context.modified_variables = self.variables[:]

    def retrieveSpecificSettings(self):
        if hasattr(self.current_context, "modified_variables"):
            self.variables[:] = self.current_context.modified_variables

    def reset_domain_edit(self):
        self.domain_editor.reset_domain()
        self.apply_domain_edit()

    def apply_domain_edit(self):
        if self.data is None:
            table = None
        else:
            domain, cols = self.domain_editor.get_domain(
                self.data.domain, self.data)
            if not (domain.variables or domain.metas):
                table = None
            else:
                X, y, m = cols
                table = Table.from_numpy(domain, X, y, m, self.data.W)
                table.name = self.data.name
                table.ids = np.array(self.data.ids)
                table.attributes = getattr(self.data, 'attributes', {})

        self.Outputs.data.send(table)
        self.apply_button.setEnabled(False)

    def get_widget_name_extension(self):
        _, name = os.path.split(self.loaded_file)
        return os.path.splitext(name)[0]

    def send_report(self):
        def get_ext_name(filename):
            try:
                return FileFormat.names[os.path.splitext(filename)[1]]
            except KeyError:
                return "unknown"

        if self.data is None:
            self.report_paragraph("File", "No file.")
            return

        if self.source == self.LOCAL_FILE:
            home = os.path.expanduser("~")
            if self.loaded_file.startswith(home):
                # os.path.join does not like ~
                name = "~" + os.path.sep + \
                       self.loaded_file[len(home):].lstrip("/").lstrip("\\")
            else:
                name = self.loaded_file
            if self.sheet_combo.isVisible():
                name += f" ({self.sheet_combo.currentText()})"
            self.report_items("File", [("File name", name),
                                       ("Format", get_ext_name(name))])
        else:
            self.report_items("Data", [("Resource", self.url),
                                       ("Format", get_ext_name(self.url))])

        self.report_data("Data", self.data)

    @staticmethod
    def dragEnterEvent(event):
        """Accept drops of valid file urls"""
        urls = event.mimeData().urls()
        if urls:
            try:
                FileFormat.get_reader(urls[0].toLocalFile())
                event.acceptProposedAction()
            except IOError:
                pass

    def dropEvent(self, event):
        """Handle file drops"""
        urls = event.mimeData().urls()
        if urls:
            self.add_path(urls[0].toLocalFile())  # add first file
            self.source = self.LOCAL_FILE
            self.load_data()

    def workflowEnvChanged(self, key, value, oldvalue):
        """
        Function called when environment changes (e.g. while saving the scheme)
        It make sure that all environment connected values are modified
        (e.g. relative file paths are changed)
        """
        self.update_file_list(key, value, oldvalue)
Пример #22
0
class OWFile(widget.OWWidget, RecentPathsWComboMixin):
    name = "File"
    id = "orange.widgets.data.file"
    description = "Read data from an input file or network " \
                  "and send a data table to the output."
    icon = "icons/File.svg"
    priority = 10
    category = "Data"
    keywords = ["data", "file", "load", "read"]
    outputs = [
        widget.OutputSignal(
            "Data",
            Table,
            doc="Attribute-valued data set read from the input file.")
    ]

    want_main_area = False

    SEARCH_PATHS = [("sample-datasets", get_sample_datasets_dir())]
    SIZE_LIMIT = 1e7
    LOCAL_FILE, URL = range(2)

    settingsHandler = PerfectDomainContextHandler()

    # Overload RecentPathsWidgetMixin.recent_paths to set defaults
    recent_paths = Setting([
        RecentPath("", "sample-datasets", "iris.tab"),
        RecentPath("", "sample-datasets", "titanic.tab"),
        RecentPath("", "sample-datasets", "housing.tab"),
        RecentPath("", "sample-datasets", "heart_disease.tab"),
    ])
    recent_urls = Setting([])
    source = Setting(LOCAL_FILE)
    xls_sheet = ContextSetting("")
    sheet_names = Setting({})
    url = Setting("")

    variables = ContextSetting([])

    dlg_formats = ("All readable files ({});;".format(
        '*' + ' *'.join(FileFormat.readers.keys())) + ";;".join(
            "{} (*{})".format(f.DESCRIPTION, ' *'.join(f.EXTENSIONS))
            for f in sorted(set(FileFormat.readers.values()),
                            key=list(FileFormat.readers.values()).index)))

    domain_editor = SettingProvider(DomainEditor)

    class Warning(widget.OWWidget.Warning):
        file_too_big = widget.Msg(
            "The file is too large to load automatically."
            " Press Reload to load.")

    class Error(widget.OWWidget.Error):
        file_not_found = widget.Msg("File not found.")

    def __init__(self):
        super().__init__()
        RecentPathsWComboMixin.__init__(self)
        self.domain = None
        self.data = None
        self.loaded_file = ""
        self.reader = None

        layout = QGridLayout()
        gui.widgetBox(self.controlArea, margin=0, orientation=layout)
        vbox = gui.radioButtons(None,
                                self,
                                "source",
                                box=True,
                                addSpace=True,
                                callback=self.load_data,
                                addToLayout=False)

        rb_button = gui.appendRadioButton(vbox, "File:", addToLayout=False)
        layout.addWidget(rb_button, 0, 0, Qt.AlignVCenter)

        box = gui.hBox(None, addToLayout=False, margin=0)
        box.setSizePolicy(Policy.MinimumExpanding, Policy.Fixed)
        self.file_combo.setSizePolicy(Policy.MinimumExpanding, Policy.Fixed)
        self.file_combo.activated[int].connect(self.select_file)
        box.layout().addWidget(self.file_combo)
        layout.addWidget(box, 0, 1)

        file_button = gui.button(None,
                                 self,
                                 '...',
                                 callback=self.browse_file,
                                 autoDefault=False)
        file_button.setIcon(self.style().standardIcon(QStyle.SP_DirOpenIcon))
        file_button.setSizePolicy(Policy.Maximum, Policy.Fixed)
        layout.addWidget(file_button, 0, 2)

        reload_button = gui.button(None,
                                   self,
                                   "Reload",
                                   callback=self.load_data,
                                   autoDefault=False)
        reload_button.setIcon(self.style().standardIcon(
            QStyle.SP_BrowserReload))
        reload_button.setSizePolicy(Policy.Fixed, Policy.Fixed)
        layout.addWidget(reload_button, 0, 3)

        self.sheet_box = gui.hBox(None, addToLayout=False, margin=0)
        self.sheet_combo = gui.comboBox(
            None,
            self,
            "xls_sheet",
            callback=self.select_sheet,
            sendSelectedValue=True,
        )
        self.sheet_combo.setSizePolicy(Policy.MinimumExpanding, Policy.Fixed)
        self.sheet_label = QLabel()
        self.sheet_label.setText('Sheet')
        self.sheet_label.setSizePolicy(Policy.MinimumExpanding, Policy.Fixed)
        self.sheet_box.layout().addWidget(self.sheet_label, Qt.AlignLeft)
        self.sheet_box.layout().addWidget(self.sheet_combo, Qt.AlignVCenter)
        layout.addWidget(self.sheet_box, 2, 1)
        self.sheet_box.hide()

        rb_button = gui.appendRadioButton(vbox, "URL:", addToLayout=False)
        layout.addWidget(rb_button, 3, 0, Qt.AlignVCenter)

        self.url_combo = url_combo = QComboBox()
        url_model = NamedURLModel(self.sheet_names)
        url_model.wrap(self.recent_urls)
        url_combo.setLineEdit(LineEditSelectOnFocus())
        url_combo.setModel(url_model)
        url_combo.setSizePolicy(Policy.MinimumExpanding, Policy.Fixed)
        url_combo.setEditable(True)
        url_combo.setInsertPolicy(url_combo.InsertAtTop)
        url_edit = url_combo.lineEdit()
        l, t, r, b = url_edit.getTextMargins()
        url_edit.setTextMargins(l + 5, t, r, b)
        layout.addWidget(url_combo, 3, 1, 3, 3)
        url_combo.activated.connect(self._url_set)

        box = gui.vBox(self.controlArea, "Info")
        self.info = gui.widgetLabel(box, 'No data loaded.')
        self.warnings = gui.widgetLabel(box, '')

        box = gui.widgetBox(self.controlArea, "Columns (Double click to edit)")
        self.domain_editor = DomainEditor(self)
        self.editor_model = self.domain_editor.model()
        box.layout().addWidget(self.domain_editor)

        box = gui.hBox(self.controlArea)
        gui.button(box,
                   self,
                   "Browse documentation data sets",
                   callback=lambda: self.browse_file(True),
                   autoDefault=False)
        gui.rubber(box)
        box.layout().addWidget(self.report_button)
        self.report_button.setFixedWidth(170)

        self.apply_button = gui.button(box,
                                       self,
                                       "Apply",
                                       callback=self.apply_domain_edit)
        self.apply_button.setEnabled(False)
        self.apply_button.setFixedWidth(170)
        self.editor_model.dataChanged.connect(
            lambda: self.apply_button.setEnabled(True))

        self.set_file_list()
        # Must not call open_file from within __init__. open_file
        # explicitly re-enters the event loop (by a progress bar)

        self.setAcceptDrops(True)

        if self.source == self.LOCAL_FILE:
            last_path = self.last_path()
            if last_path and os.path.exists(last_path) and \
                    os.path.getsize(last_path) > self.SIZE_LIMIT:
                self.Warning.file_too_big()
                return

        QTimer.singleShot(0, self.load_data)

    def sizeHint(self):
        return QSize(600, 550)

    def select_file(self, n):
        assert n < len(self.recent_paths)
        super().select_file(n)
        if self.recent_paths:
            self.source = self.LOCAL_FILE
            self.load_data()
            self.set_file_list()

    def select_sheet(self):
        self.recent_paths[0].sheet = self.sheet_combo.currentText()
        self.load_data()

    def _url_set(self):
        self.source = self.URL
        self.load_data()

    def browse_file(self, in_demos=False):
        if in_demos:
            start_file = get_sample_datasets_dir()
            if not os.path.exists(start_file):
                QMessageBox.information(
                    None, "File",
                    "Cannot find the directory with documentation data sets")
                return
        else:
            start_file = self.last_path() or os.path.expanduser("~/")

        filename, _ = QFileDialog.getOpenFileName(self,
                                                  'Open Orange Data File',
                                                  start_file, self.dlg_formats)
        if not filename:
            return
        self.add_path(filename)
        self.source = self.LOCAL_FILE
        self.load_data()

    # Open a file, create data from it and send it over the data channel
    def load_data(self):
        # We need to catch any exception type since anything can happen in
        # file readers
        # pylint: disable=broad-except
        self.closeContext()
        self.domain_editor.set_domain(None)
        self.apply_button.setEnabled(False)
        self.clear_messages()
        self.set_file_list()
        if self.last_path() and not os.path.exists(self.last_path()):
            self.Error.file_not_found()
            self.send("Data", None)
            self.info.setText("No data.")
            return

        error = None
        try:
            self.reader = self._get_reader()
            if self.reader is None:
                self.data = None
                self.send("Data", None)
                self.info.setText("No data.")
                self.sheet_box.hide()
                return
        except Exception as ex:
            error = ex

        if not error:
            self._update_sheet_combo()
            with catch_warnings(record=True) as warnings:
                try:
                    data = self.reader.read()
                except Exception as ex:
                    log.exception(ex)
                    error = ex
                self.warning(warnings[-1].message.args[0] if warnings else '')

        if error:
            self.data = None
            self.send("Data", None)
            self.info.setText("An error occurred:\n{}".format(error))
            self.sheet_box.hide()
            return

        self.info.setText(self._describe(data))

        self.loaded_file = self.last_path()
        add_origin(data, self.loaded_file)
        self.data = data
        self.openContext(data.domain)
        self.apply_domain_edit()  # sends data

    def _get_reader(self):
        """

        Returns
        -------
        FileFormat
        """
        if self.source == self.LOCAL_FILE:
            reader = FileFormat.get_reader(self.last_path())
            if self.recent_paths and self.recent_paths[0].sheet:
                reader.select_sheet(self.recent_paths[0].sheet)
            return reader
        elif self.source == self.URL:
            url = self.url_combo.currentText().strip()
            if url:
                return UrlReader(url)

    def _update_sheet_combo(self):
        if len(self.reader.sheets) < 2:
            self.sheet_box.hide()
            self.reader.select_sheet(None)
            return

        self.sheet_combo.clear()
        self.sheet_combo.addItems(self.reader.sheets)
        self._select_active_sheet()
        self.sheet_box.show()

    def _select_active_sheet(self):
        if self.reader.sheet:
            try:
                idx = self.reader.sheets.index(self.reader.sheet)
                self.sheet_combo.setCurrentIndex(idx)
            except ValueError:
                # Requested sheet does not exist in this file
                self.reader.select_sheet(None)
        else:
            self.sheet_combo.setCurrentIndex(0)

    def _describe(self, table):
        domain = table.domain
        text = ""

        attrs = getattr(table, "attributes", {})
        descs = [
            attrs[desc] for desc in ("Name", "Description") if desc in attrs
        ]
        if len(descs) == 2:
            descs[0] = "<b>{}</b>".format(descs[0])
        if descs:
            text += "<p>{}</p>".format("<br/>".join(descs))

        text += "<p>{} instance(s), {} feature(s), {} meta attribute(s)".\
            format(len(table), len(domain.attributes), len(domain.metas))
        if domain.has_continuous_class:
            text += "<br/>Regression; numerical class."
        elif domain.has_discrete_class:
            text += "<br/>Classification; discrete class with {} values.".\
                format(len(domain.class_var.values))
        elif table.domain.class_vars:
            text += "<br/>Multi-target; {} target variables.".format(
                len(table.domain.class_vars))
        else:
            text += "<br/>Data has no target variable."
        text += "</p>"

        if 'Timestamp' in table.domain:
            # Google Forms uses this header to timestamp responses
            text += '<p>First entry: {}<br/>Last entry: {}</p>'.format(
                table[0, 'Timestamp'], table[-1, 'Timestamp'])
        return text

    def storeSpecificSettings(self):
        self.current_context.modified_variables = self.variables[:]

    def retrieveSpecificSettings(self):
        if hasattr(self.current_context, "modified_variables"):
            self.variables[:] = self.current_context.modified_variables

    def apply_domain_edit(self):
        if self.data is not None:
            domain, cols = self.domain_editor.get_domain(
                self.data.domain, self.data)
            X, y, m = cols
            X = np.array(X).T if len(X) else np.empty((len(self.data), 0))
            y = np.array(y).T if len(y) else None
            dtpe = object if any(
                isinstance(m, StringVariable) for m in domain.metas) else float
            m = np.array(m, dtype=dtpe).T if len(m) else None
            table = Table.from_numpy(domain, X, y, m, self.data.W)
            table.name = self.data.name
            table.ids = np.array(self.data.ids)
            table.attributes = getattr(self.data, 'attributes', {})
        else:
            table = self.data

        self.send("Data", table)
        self.apply_button.setEnabled(False)

    def get_widget_name_extension(self):
        _, name = os.path.split(self.loaded_file)
        return os.path.splitext(name)[0]

    def send_report(self):
        def get_ext_name(filename):
            try:
                return FileFormat.names[os.path.splitext(filename)[1]]
            except KeyError:
                return "unknown"

        if self.data is None:
            self.report_paragraph("File", "No file.")
            return

        if self.source == self.LOCAL_FILE:
            home = os.path.expanduser("~")
            if self.loaded_file.startswith(home):
                # os.path.join does not like ~
                name = "~" + os.path.sep + \
                       self.loaded_file[len(home):].lstrip("/").lstrip("\\")
            else:
                name = self.loaded_file
            if self.sheet_combo.isVisible():
                name += " ({})".format(self.sheet_combo.currentText())
            self.report_items("File", [("File name", name),
                                       ("Format", get_ext_name(name))])
        else:
            self.report_items("Data", [("Resource", self.url),
                                       ("Format", get_ext_name(self.url))])

        self.report_data("Data", self.data)

    def dragEnterEvent(self, event):
        """Accept drops of valid file urls"""
        urls = event.mimeData().urls()
        if urls:
            try:
                FileFormat.get_reader(
                    OSX_NSURL_toLocalFile(urls[0]) or urls[0].toLocalFile())
                event.acceptProposedAction()
            except IOError:
                pass

    def dropEvent(self, event):
        """Handle file drops"""
        urls = event.mimeData().urls()
        if urls:
            self.add_path(
                OSX_NSURL_toLocalFile(urls[0])
                or urls[0].toLocalFile())  # add first file
            self.source = self.LOCAL_FILE
            self.load_data()
Пример #23
0
class OWFile(widget.OWWidget, RecentPathsWComboMixin):
    name = "File"
    id = "orange.widgets.data.file"
    description = "Read a data from an input file or network " \
                  "and send the data table to the output."
    icon = "icons/File.svg"
    priority = 10
    category = "Data"
    keywords = ["data", "file", "load", "read"]
    outputs = [widget.OutputSignal(
        "Data", Table,
        doc="Attribute-valued data set read from the input file.")]

    want_main_area = False

    SEARCH_PATHS = [("sample-datasets", get_sample_datasets_dir())]

    LOCAL_FILE, URL = range(2)

    settingsHandler = PerfectDomainContextHandler()

    # Overload RecentPathsWidgetMixin.recent_paths to set defaults
    recent_paths = Setting([
        RecentPath("", "sample-datasets", "iris.tab"),
        RecentPath("", "sample-datasets", "titanic.tab"),
        RecentPath("", "sample-datasets", "housing.tab"),
    ])
    recent_urls = Setting([])
    source = Setting(LOCAL_FILE)
    xls_sheet = ContextSetting("")
    sheet_names = Setting({})
    url = Setting("")

    variables = ContextSetting([])

    dlg_formats = (
        "All readable files ({});;".format(
            '*' + ' *'.join(FileFormat.readers.keys())) +
        ";;".join("{} (*{})".format(f.DESCRIPTION, ' *'.join(f.EXTENSIONS))
                  for f in sorted(set(FileFormat.readers.values()),
                                  key=list(FileFormat.readers.values()).index)))

    def __init__(self):
        super().__init__()
        RecentPathsWComboMixin.__init__(self)
        self.domain = None
        self.data = None
        self.loaded_file = ""
        self.reader = None

        layout = QtGui.QGridLayout()
        gui.widgetBox(self.controlArea, margin=0, orientation=layout)
        vbox = gui.radioButtons(None, self, "source", box=True, addSpace=True,
                                callback=self.load_data, addToLayout=False)

        rb_button = gui.appendRadioButton(vbox, "File:", addToLayout=False)
        layout.addWidget(rb_button, 0, 0, QtCore.Qt.AlignVCenter)

        box = gui.hBox(None, addToLayout=False, margin=0)
        box.setSizePolicy(Policy.MinimumExpanding, Policy.Fixed)
        self.file_combo.setSizePolicy(Policy.MinimumExpanding, Policy.Fixed)
        self.file_combo.activated[int].connect(self.select_file)
        box.layout().addWidget(self.file_combo)
        layout.addWidget(box, 0, 1)

        file_button = gui.button(
            None, self, '...', callback=self.browse_file, autoDefault=False)
        file_button.setIcon(self.style().standardIcon(
            QtGui.QStyle.SP_DirOpenIcon))
        file_button.setSizePolicy(Policy.Maximum, Policy.Fixed)
        layout.addWidget(file_button, 0, 2)

        reload_button = gui.button(
            None, self, "Reload", callback=self.load_data, autoDefault=False)
        reload_button.setIcon(self.style().standardIcon(
            QtGui.QStyle.SP_BrowserReload))
        reload_button.setSizePolicy(Policy.Fixed, Policy.Fixed)
        layout.addWidget(reload_button, 0, 3)

        self.sheet_box = gui.hBox(None, addToLayout=False, margin=0)
        self.sheet_combo = gui.comboBox(None, self, "xls_sheet",
                                        callback=self.select_sheet,
                                        sendSelectedValue=True)
        self.sheet_combo.setSizePolicy(
            Policy.MinimumExpanding, Policy.Fixed)
        self.sheet_label = QtGui.QLabel()
        self.sheet_label.setText('Sheet')
        self.sheet_label.setSizePolicy(
            Policy.MinimumExpanding, Policy.Fixed)
        self.sheet_box.layout().addWidget(
            self.sheet_label, QtCore.Qt.AlignLeft)
        self.sheet_box.layout().addWidget(
            self.sheet_combo, QtCore.Qt.AlignVCenter)
        layout.addWidget(self.sheet_box, 2, 1)
        self.sheet_box.hide()

        rb_button = gui.appendRadioButton(vbox, "URL:", addToLayout=False)
        layout.addWidget(rb_button, 3, 0, QtCore.Qt.AlignVCenter)

        self.url_combo = url_combo = QtGui.QComboBox()
        url_model = NamedURLModel(self.sheet_names)
        url_model.wrap(self.recent_urls)
        url_combo.setModel(url_model)
        url_combo.setSizePolicy(Policy.MinimumExpanding, Policy.Fixed)
        url_combo.setEditable(True)
        url_combo.setInsertPolicy(url_combo.InsertAtTop)
        url_edit = url_combo.lineEdit()
        l, t, r, b = url_edit.getTextMargins()
        url_edit.setTextMargins(l + 5, t, r, b)
        layout.addWidget(url_combo, 3, 1, 3, 3)
        url_combo.activated.connect(self._url_set)

        box = gui.vBox(self.controlArea, "Info")
        self.info = gui.widgetLabel(box, 'No data loaded.')
        self.warnings = gui.widgetLabel(box, '')

        box = gui.widgetBox(self.controlArea, "Columns (Double click to edit)")
        domain_editor = DomainEditor(self.variables)
        self.editor_model = domain_editor.model()
        box.layout().addWidget(domain_editor)

        box = gui.hBox(self.controlArea)
        gui.button(
            box, self, "Browse documentation data sets",
            callback=lambda: self.browse_file(True), autoDefault=False)
        gui.rubber(box)
        box.layout().addWidget(self.report_button)
        self.report_button.setFixedWidth(170)

        self.apply_button = gui.button(
            box, self, "Apply", callback=self.apply_domain_edit)
        self.apply_button.hide()
        self.apply_button.setFixedWidth(170)
        self.editor_model.dataChanged.connect(self.apply_button.show)

        self.set_file_list()
        # Must not call open_file from within __init__. open_file
        # explicitly re-enters the event loop (by a progress bar)
        QtCore.QTimer.singleShot(0, self.load_data)

        self.setAcceptDrops(True)

    def sizeHint(self):
        return QtCore.QSize(600, 550)

    def select_file(self, n):
        assert n < len(self.recent_paths)
        super().select_file(n)
        if self.recent_paths:
            self.source = self.LOCAL_FILE
            self.load_data()
            self.set_file_list()

    def select_sheet(self):
        self.recent_paths[0].sheet = self.sheet_combo.currentText()
        self.load_data()

    def _url_set(self):
        self.source = self.URL
        self.load_data()

    def browse_file(self, in_demos=False):
        if in_demos:
            start_file = get_sample_datasets_dir()
            if not os.path.exists(start_file):
                QtGui.QMessageBox.information(
                    None, "File",
                    "Cannot find the directory with documentation data sets")
                return
        else:
            start_file = self.last_path() or os.path.expanduser("~/")

        filename = QtGui.QFileDialog.getOpenFileName(
            self, 'Open Orange Data File', start_file, self.dlg_formats)
        if not filename:
            return
        self.loaded_file = filename
        self.add_path(filename)
        self.source = self.LOCAL_FILE
        self.load_data()

    # Open a file, create data from it and send it over the data channel
    def load_data(self):
        self.reader = self._get_reader()
        self._update_sheet_combo()

        errors = []
        with catch_warnings(record=True) as warnings:
            try:
                data = self.reader.read()
            except Exception as ex:
                errors.append("An error occurred:")
                errors.append(str(ex))
                data = None
                self.editor_model.reset()
            self.warning(warnings[-1].message.args[0] if warnings else '')

        if data is None:
            self.send("Data", None)
            self.info.setText("\n".join(errors))
            return

        self.info.setText(self._describe(data))

        add_origin(data, self.loaded_file or self.last_path())
        self.send("Data", data)
        self.editor_model.set_domain(data.domain)
        self.data = data

    def _get_reader(self):
        """

        Returns
        -------
        FileFormat
        """
        if self.source == self.LOCAL_FILE:
            reader = FileFormat.get_reader(self.last_path())
            if self.recent_paths and self.recent_paths[0].sheet:
                reader.select_sheet(self.recent_paths[0].sheet)
            return reader
        elif self.source == self.URL:
            return UrlReader(self.url_combo.currentText())

    def _update_sheet_combo(self):
        if len(self.reader.sheets) < 2:
            self.sheet_box.hide()
            self.reader.select_sheet(None)
            return

        self.sheet_combo.clear()
        self.sheet_combo.addItems(self.reader.sheets)
        self._select_active_sheet()
        self.sheet_box.show()

    def _select_active_sheet(self):
        if self.reader.sheet:
            try:
                idx = self.reader.sheets.index(self.reader.sheet)
                self.sheet_combo.setCurrentIndex(idx)
            except ValueError:
                # Requested sheet does not exist in this file
                self.reader.select_sheet(None)
        else:
            self.sheet_combo.setCurrentIndex(0)

    def _describe(self, table):
        domain = table.domain
        text = "{} instance(s), {} feature(s), {} meta attribute(s)".format(
            len(table), len(domain.attributes), len(domain.metas))
        if domain.has_continuous_class:
            text += "\nRegression; numerical class."
        elif domain.has_discrete_class:
            text += "\nClassification; discrete class with {} values.".format(
                len(domain.class_var.values))
        elif table.domain.class_vars:
            text += "\nMulti-target; {} target variables.".format(
                len(table.domain.class_vars))
        else:
            text += "\nData has no target variable."
        if 'Timestamp' in table.domain:
            # Google Forms uses this header to timestamp responses
            text += '\n\nFirst entry: {}\nLast entry: {}'.format(
                table[0, 'Timestamp'], table[-1, 'Timestamp'])
        return text

    def storeSpecificSettings(self):
        self.current_context.modified_variables = self.variables[:]

    def retrieveSpecificSettings(self):
        if hasattr(self.current_context, "modified_variables"):
            self.variables[:] = self.current_context.modified_variables

    def apply_domain_edit(self):
        attributes = []
        class_vars = []
        metas = []
        places = [attributes, class_vars, metas]
        X, y, m = [], [], []
        cols = [X, y, m]  # Xcols, Ycols, Mcols

        def is_missing(x):
            return str(x) in ("nan", "")

        for column, (name, tpe, place, vals, is_con), (orig_var, orig_plc) in \
            zip(count(), self.editor_model.variables,
                chain([(at, 0) for at in self.data.domain.attributes],
                      [(cl, 1) for cl in self.data.domain.class_vars],
                      [(mt, 2) for mt in self.data.domain.metas])):
            if place == 3:
                continue
            if orig_plc == 2:
                col_data = list(chain(*self.data[:, orig_var].metas))
            else:
                col_data = list(chain(*self.data[:, orig_var]))
            if name == orig_var.name and tpe == type(orig_var):
                var = orig_var
            elif tpe == DiscreteVariable:
                values = list(str(i) for i in set(col_data) if not is_missing(i))
                var = tpe(name, values)
                col_data = [np.nan if is_missing(x) else values.index(str(x))
                            for x in col_data]
            elif tpe == StringVariable and type(orig_var) == DiscreteVariable:
                var = tpe(name)
                col_data = [orig_var.repr_val(x) if not np.isnan(x) else ""
                            for x in col_data]
            else:
                var = tpe(name)
            places[place].append(var)
            cols[place].append(col_data)
        domain = Domain(attributes, class_vars, metas)
        X = np.array(X).T if len(X) else np.empty((len(self.data), 0))
        y = np.array(y).T if len(y) else None
        dtpe = object if any(isinstance(m, StringVariable)
                             for m in domain.metas) else float
        m = np.array(m, dtype=dtpe).T if len(m) else None
        table = Table.from_numpy(domain, X, y, m, self.data.W)
        self.send("Data", table)
        self.apply_button.hide()

    def get_widget_name_extension(self):
        _, name = os.path.split(self.loaded_file)
        return os.path.splitext(name)[0]

    def send_report(self):
        def get_ext_name(filename):
            try:
                return FileFormat.names[os.path.splitext(filename)[1]]
            except KeyError:
                return "unknown"

        if self.data is None:
            self.report_paragraph("File", "No file.")
            return

        if self.source == self.LOCAL_FILE:
            home = os.path.expanduser("~")
            if self.loaded_file.startswith(home):
                # os.path.join does not like ~
                name = "~/" + \
                       self.loaded_file[len(home):].lstrip("/").lstrip("\\")
            else:
                name = self.loaded_file
            if self.sheet_combo.isVisible():
                name += " ({})".format(self.sheet_combo.currentText())
            self.report_items("File", [("File name", name),
                                       ("Format", get_ext_name(name))])
        else:
            self.report_items("Data", [("Resource", self.url),
                                       ("Format", get_ext_name(self.url))])

        self.report_data("Data", self.data)

    def dragEnterEvent(self, event):
        """Accept drops of valid file urls"""
        urls = event.mimeData().urls()
        if urls:
            try:
                FileFormat.get_reader(OSX_NSURL_toLocalFile(urls[0]) or
                                      urls[0].toLocalFile())
                event.acceptProposedAction()
            except IOError:
                pass

    def dropEvent(self, event):
        """Handle file drops"""
        urls = event.mimeData().urls()
        if urls:
            self.add_path(OSX_NSURL_toLocalFile(urls[0]) or
                          urls[0].toLocalFile())  # add first file
            self.source = self.LOCAL_FILE
            self.load_data()
Пример #24
0
class OWFile(widget.OWWidget, RecentPathsWComboMixin):
    name = "文件(File)"
    id = "orange.widgets.data.file"
    description = "从输入文件或网络读取数据并将数据表发送到输出。"

    icon = "icons/File.svg"
    priority = 10
    category = "数据(Data)"
    keywords = ["file", "load", "read", "open", "wenjian"]

    class Outputs:
        data = Output("数据(Data)",
                      Table,
                      doc="Attribute-valued dataset read from the input file.",
                      replaces=['Data'])

    want_main_area = False
    buttons_area_orientation = None

    SEARCH_PATHS = [("sample-datasets", get_sample_datasets_dir())]
    SIZE_LIMIT = 1e7
    LOCAL_FILE, URL = range(2)

    settingsHandler = PerfectDomainContextHandler(
        match_values=PerfectDomainContextHandler.MATCH_VALUES_ALL)

    # pylint seems to want declarations separated from definitions
    recent_paths: List[RecentPath]
    recent_urls: List[str]
    variables: list

    # Overload RecentPathsWidgetMixin.recent_paths to set defaults
    recent_paths = Setting([
        RecentPath("", "sample-datasets", "iris.tab"),
        RecentPath("", "sample-datasets", "titanic.tab"),
        RecentPath("", "sample-datasets", "housing.tab"),
        RecentPath("", "sample-datasets", "heart_disease.tab"),
        RecentPath("", "sample-datasets", "brown-selected.tab"),
        RecentPath("", "sample-datasets", "zoo.tab"),
    ])
    recent_urls = Setting([])
    source = Setting(LOCAL_FILE)
    sheet_names = Setting({})
    url = Setting("")

    variables = ContextSetting([])

    domain_editor = SettingProvider(DomainEditor)

    class Information(widget.OWWidget.Information):
        no_file_selected = Msg("No file selected.")

    class Warning(widget.OWWidget.Warning):
        file_too_big = Msg("The file is too large to load automatically."
                           " Press Reload to load.")
        load_warning = Msg("Read warning:\n{}")
        performance_warning = Msg(
            "Categorical variables with >100 values may decrease performance.")
        renamed_vars = Msg("Some variables have been renamed "
                           "to avoid duplicates.\n{}")
        multiple_targets = Msg("Most widgets do not support multiple targets")

    class Error(widget.OWWidget.Error):
        file_not_found = Msg("File not found.")
        missing_reader = Msg("Missing reader.")
        sheet_error = Msg("Error listing available sheets.")
        unknown = Msg("Read error:\n{}")

    UserAdviceMessages = [
        widget.Message(
            "Use CSV File Import widget for advanced options "
            "for comma-separated files", "use-csv-file-import"),
        widget.Message(
            "This widget loads only tabular data. Use other widgets to load "
            "other data types like models, distance matrices and networks.",
            "other-data-types")
    ]

    def __init__(self):
        super().__init__()
        RecentPathsWComboMixin.__init__(self)
        self.domain = None
        self.data = None
        self.loaded_file = ""
        self.reader = None

        readers = [
            f for f in FileFormat.formats
            if getattr(f, 'read', None) and getattr(f, "EXTENSIONS", None)
        ]

        def group_readers_per_addon_key(w):
            # readers from Orange.data.io should go first
            def package(w):
                package = w.qualified_name().split(".")[:-1]
                package = package[:2]
                if ".".join(package) == "Orange.data":
                    return ["0"]  # force "Orange" to come first
                return package

            return package(w), w.DESCRIPTION

        self.available_readers = sorted(set(readers),
                                        key=group_readers_per_addon_key)

        layout = QGridLayout()
        layout.setSpacing(4)
        gui.widgetBox(self.controlArea, orientation=layout, box='数据源')
        vbox = gui.radioButtons(None,
                                self,
                                "source",
                                box=True,
                                callback=self.load_data,
                                addToLayout=False)

        rb_button = gui.appendRadioButton(vbox, "文件:", addToLayout=False)
        layout.addWidget(rb_button, 0, 0, Qt.AlignVCenter)

        box = gui.hBox(None, addToLayout=False, margin=0)
        box.setSizePolicy(Policy.Expanding, Policy.Fixed)
        self.file_combo.setSizePolicy(Policy.Expanding, Policy.Fixed)
        self.file_combo.setMinimumSize(QSize(100, 1))
        self.file_combo.activated[int].connect(self.select_file)
        box.layout().addWidget(self.file_combo)
        layout.addWidget(box, 0, 1)

        file_button = gui.button(None,
                                 self,
                                 '...',
                                 callback=self.browse_file,
                                 autoDefault=False)
        file_button.setIcon(self.style().standardIcon(QStyle.SP_DirOpenIcon))
        file_button.setSizePolicy(Policy.Maximum, Policy.Fixed)
        layout.addWidget(file_button, 0, 2)

        reload_button = gui.button(None,
                                   self,
                                   "重新加载",
                                   callback=self.load_data,
                                   autoDefault=False)
        reload_button.setIcon(self.style().standardIcon(
            QStyle.SP_BrowserReload))
        reload_button.setSizePolicy(Policy.Fixed, Policy.Fixed)
        layout.addWidget(reload_button, 0, 3)

        self.sheet_box = gui.hBox(None, addToLayout=False, margin=0)
        self.sheet_combo = QComboBox()
        self.sheet_combo.activated[str].connect(self.select_sheet)
        self.sheet_combo.setSizePolicy(Policy.Expanding, Policy.Fixed)
        self.sheet_combo.setMinimumSize(QSize(50, 1))
        self.sheet_label = QLabel()
        self.sheet_label.setText('Sheet')
        self.sheet_label.setSizePolicy(Policy.MinimumExpanding, Policy.Fixed)
        self.sheet_box.layout().addWidget(self.sheet_label, Qt.AlignLeft)
        self.sheet_box.layout().addWidget(self.sheet_combo, Qt.AlignVCenter)
        layout.addWidget(self.sheet_box, 2, 1)
        self.sheet_box.hide()

        rb_button = gui.appendRadioButton(vbox, "URL:", addToLayout=False)
        layout.addWidget(rb_button, 3, 0, Qt.AlignVCenter)

        self.url_combo = url_combo = QComboBox()
        url_model = NamedURLModel(self.sheet_names)
        url_model.wrap(self.recent_urls)
        url_combo.setLineEdit(LineEditSelectOnFocus())
        url_combo.setModel(url_model)
        url_combo.setSizePolicy(Policy.Ignored, Policy.Fixed)
        url_combo.setEditable(True)
        url_combo.setInsertPolicy(url_combo.InsertAtTop)
        url_edit = url_combo.lineEdit()
        l, t, r, b = url_edit.getTextMargins()
        url_edit.setTextMargins(l + 5, t, r, b)
        layout.addWidget(url_combo, 3, 1, 1, 3)
        url_combo.activated.connect(self._url_set)
        # whit completer we set that combo box is case sensitive when
        # matching the history
        completer = QCompleter()
        completer.setCaseSensitivity(Qt.CaseSensitive)
        url_combo.setCompleter(completer)

        layout = QGridLayout()
        layout.setSpacing(4)
        gui.widgetBox(self.controlArea, orientation=layout, box='文件类型')

        box = gui.hBox(None, addToLayout=False, margin=0)
        box.setSizePolicy(Policy.Expanding, Policy.Fixed)
        self.reader_combo = QComboBox(self)
        self.reader_combo.setSizePolicy(Policy.Expanding, Policy.Fixed)
        self.reader_combo.setMinimumSize(QSize(100, 1))
        self.reader_combo.activated[int].connect(self.select_reader)

        box.layout().addWidget(self.reader_combo)
        layout.addWidget(box, 0, 1)

        box = gui.vBox(self.controlArea, "信息")
        self.infolabel = gui.widgetLabel(box, '未加载数据.')

        box = gui.widgetBox(self.controlArea, "列(双击编辑)")
        self.domain_editor = DomainEditor(self)
        self.editor_model = self.domain_editor.model()
        box.layout().addWidget(self.domain_editor)

        box = gui.hBox(box)
        gui.button(box,
                   self,
                   "重置",
                   callback=self.reset_domain_edit,
                   autoDefault=False)
        gui.rubber(box)
        self.apply_button = gui.button(box,
                                       self,
                                       "应用",
                                       callback=self.apply_domain_edit)
        self.apply_button.setEnabled(False)
        self.apply_button.setFixedWidth(170)
        self.editor_model.dataChanged.connect(
            lambda: self.apply_button.setEnabled(True))

        hBox = gui.hBox(self.controlArea)
        gui.rubber(hBox)
        gui.button(hBox,
                   self,
                   "浏览文档数据集",
                   callback=lambda: self.browse_file(True),
                   autoDefault=False)
        gui.rubber(hBox)

        self.set_file_list()
        # Must not call open_file from within __init__. open_file
        # explicitly re-enters the event loop (by a progress bar)

        self.setAcceptDrops(True)

        if self.source == self.LOCAL_FILE:
            last_path = self.last_path()
            if last_path and os.path.exists(last_path) and \
                    os.path.getsize(last_path) > self.SIZE_LIMIT:
                self.Warning.file_too_big()
                return

        QTimer.singleShot(0, self.load_data)

    @staticmethod
    def sizeHint():
        return QSize(600, 550)

    def select_file(self, n):
        assert n < len(self.recent_paths)
        super().select_file(n)
        if self.recent_paths:
            self.source = self.LOCAL_FILE
            self.load_data()
            self.set_file_list()

    def select_sheet(self):
        self.recent_paths[0].sheet = self.sheet_combo.currentText()
        self.load_data()

    def select_reader(self, n):
        if self.source != self.LOCAL_FILE:
            return  # ignore for URL's

        if self.recent_paths:
            path = self.recent_paths[0]
            if n == 0:  # default
                path.file_format = None
                self.load_data()
            elif n <= len(self.available_readers):
                reader = self.available_readers[n - 1]
                path.file_format = reader.qualified_name()
                self.load_data()
            else:  # the rest include just qualified names
                path.file_format = self.reader_combo.itemText(n)
                self.load_data()

    def _url_set(self):
        url = self.url_combo.currentText()
        pos = self.recent_urls.index(url)
        url = url.strip()

        if not urlparse(url).scheme:
            url = 'http://' + url
            self.url_combo.setItemText(pos, url)
            self.recent_urls[pos] = url

        self.source = self.URL
        self.load_data()

    def browse_file(self, in_demos=False):
        if in_demos:
            start_file = get_sample_datasets_dir()
            if not os.path.exists(start_file):
                QMessageBox.information(None, "文件", "无法找到文件")
                return
        else:
            start_file = self.last_path() or os.path.expanduser("~/")

        filename, reader, _ = open_filename_dialog(start_file, None,
                                                   self.available_readers)
        if not filename:
            return
        self.add_path(filename)
        if reader is not None:
            self.recent_paths[0].file_format = reader.qualified_name()

        self.source = self.LOCAL_FILE
        self.load_data()

    # Open a file, create data from it and send it over the data channel
    def load_data(self):
        # We need to catch any exception type since anything can happen in
        # file readers
        self.closeContext()
        self.domain_editor.set_domain(None)
        self.apply_button.setEnabled(False)
        self.clear_messages()
        self.set_file_list()

        error = self._try_load()
        if error:
            error()
            self.data = None
            self.sheet_box.hide()
            self.Outputs.data.send(None)
            self.infolabel.setText("无数据")

    def _try_load(self):
        self._initialize_reader_combo()

        # pylint: disable=broad-except
        if self.source == self.LOCAL_FILE:
            if self.last_path() is None:
                return self.Information.no_file_selected
            elif not os.path.exists(self.last_path()):
                return self.Error.file_not_found
        else:
            url = self.url_combo.currentText().strip()
            if not url:
                return self.Information.no_file_selected

        def mark_problematic_reader():
            self.reader_combo.setItemData(self.reader_combo.currentIndex(),
                                          QBrush(Qt.red), Qt.ForegroundRole)

        try:
            self.reader = self._get_reader()  # also sets current reader index
            assert self.reader is not None
        except MissingReaderException:
            mark_problematic_reader()
            return self.Error.missing_reader
        except Exception as ex:
            mark_problematic_reader()
            log.exception(ex)
            return lambda x=ex: self.Error.unknown(str(x))

        try:
            self._update_sheet_combo()
        except Exception:
            return self.Error.sheet_error

        with log_warnings() as warnings:
            try:
                data = self.reader.read()
            except Exception as ex:
                mark_problematic_reader()
                log.exception(ex)
                return lambda x=ex: self.Error.unknown(str(x))
            if warnings:
                self.Warning.load_warning(warnings[-1].message.args[0])

        self.infolabel.setText(self._describe(data))

        self.loaded_file = self.last_path()
        add_origin(data, self.loaded_file)
        self.data = data
        self.openContext(data.domain)
        self.apply_domain_edit()  # sends data
        return None

    def _get_reader(self) -> FileFormat:
        if self.source == self.LOCAL_FILE:
            path = self.last_path()
            self.reader_combo.setEnabled(True)
            if self.recent_paths and self.recent_paths[0].file_format:
                qname = self.recent_paths[0].file_format
                qname_index = {
                    r.qualified_name(): i
                    for i, r in enumerate(self.available_readers)
                }
                if qname in qname_index:
                    self.reader_combo.setCurrentIndex(qname_index[qname] + 1)
                else:
                    # reader may be accessible, but not in self.available_readers
                    # (perhaps its code was moved)
                    self.reader_combo.addItem(qname)
                    self.reader_combo.setCurrentIndex(
                        len(self.reader_combo) - 1)
                try:
                    reader_class = class_from_qualified_name(qname)
                except Exception as ex:
                    raise MissingReaderException(
                        f'Can not find reader "{qname}"') from ex
                reader = reader_class(path)
            else:
                self.reader_combo.setCurrentIndex(0)
                reader = FileFormat.get_reader(path)
            if self.recent_paths and self.recent_paths[0].sheet:
                reader.select_sheet(self.recent_paths[0].sheet)
            return reader
        else:
            url = self.url_combo.currentText().strip()
            return UrlReader(url)

    def _update_sheet_combo(self):
        if len(self.reader.sheets) < 2:
            self.sheet_box.hide()
            self.reader.select_sheet(None)
            return

        self.sheet_combo.clear()
        self.sheet_combo.addItems(self.reader.sheets)
        self._select_active_sheet()
        self.sheet_box.show()

    def _select_active_sheet(self):
        try:
            idx = self.reader.sheets.index(self.reader.sheet)
            self.sheet_combo.setCurrentIndex(idx)
        except ValueError:
            # Requested sheet does not exist in this file
            self.reader.select_sheet(None)
            self.sheet_combo.setCurrentIndex(0)

    def _initialize_reader_combo(self):
        self.reader_combo.clear()
        filters = [format_filter(f) for f in self.available_readers]
        self.reader_combo.addItems([DEFAULT_READER_TEXT] + filters)
        self.reader_combo.setCurrentIndex(0)
        self.reader_combo.setDisabled(True)
        # additional readers may be added in self._get_reader()

    @staticmethod
    def _describe(table):
        def missing_prop(prop):
            if prop:
                return f"({prop * 100:.1f}% 个缺失值)"
            else:
                return "(无缺失值)"

        domain = table.domain
        text = ""

        attrs = getattr(table, "attributes", {})
        descs = [
            attrs[desc] for desc in ("Name", "Description") if desc in attrs
        ]
        if len(descs) == 2:
            descs[0] = f"<b>{descs[0]}</b>"
        if descs:
            text += f"<p>{'<br/>'.join(descs)}</p>"

        text += f"<p>{len(table)} 条数据"

        missing_in_attr = missing_prop(table.has_missing_attribute()
                                       and table.get_nan_frequency_attribute())
        missing_in_class = missing_prop(table.has_missing_class()
                                        and table.get_nan_frequency_class())
        text += f"<br/>特征数目: {len(domain.attributes)} {missing_in_attr}"
        if domain.has_continuous_class:
            text += f"<br/>回归; 数值类 {missing_in_class}"
        elif domain.has_discrete_class:
            text += "<br/>分类: 分类种类共 " \
                f"{len(domain.class_var.values)} 个 {missing_in_class}"
        elif table.domain.class_vars:
            text += "<br/>Multi-target; " \
                f"{len(table.domain.class_vars)} target variables " \
                f"{missing_in_class}"
        else:
            text += "<br/>Data has no target variable."
        text += f"<br/>元属性: { len(domain.metas)}"
        text += "</p>"

        if 'Timestamp' in table.domain:
            # Google Forms uses this header to timestamp responses
            text += f"<p>First entry: {table[0, 'Timestamp']}<br/>" \
                f"Last entry: {table[-1, 'Timestamp']}</p>"
        return text

    def storeSpecificSettings(self):
        self.current_context.modified_variables = self.variables[:]

    def retrieveSpecificSettings(self):
        if hasattr(self.current_context, "modified_variables"):
            self.variables[:] = self.current_context.modified_variables

    def reset_domain_edit(self):
        self.domain_editor.reset_domain()
        self.apply_domain_edit()

    def _inspect_discrete_variables(self, domain):
        for var in chain(domain.variables, domain.metas):
            if var.is_discrete and len(var.values) > 100:
                self.Warning.performance_warning()

    def apply_domain_edit(self):
        self.Warning.performance_warning.clear()
        self.Warning.renamed_vars.clear()
        if self.data is None:
            table = None
        else:
            domain, cols, renamed = \
                self.domain_editor.get_domain(self.data.domain, self.data,
                                              deduplicate=True)
            if not (domain.variables or domain.metas):
                table = None
            elif domain is self.data.domain:
                table = self.data
            else:
                X, y, m = cols
                table = Table.from_numpy(domain, X, y, m, self.data.W)
                table.name = self.data.name
                table.ids = np.array(self.data.ids)
                table.attributes = getattr(self.data, 'attributes', {})
                self._inspect_discrete_variables(domain)
            if renamed:
                self.Warning.renamed_vars(f"Renamed: {', '.join(renamed)}")

        self.Warning.multiple_targets(
            shown=table is not None and len(table.domain.class_vars) > 1)
        self.Outputs.data.send(table)
        self.apply_button.setEnabled(False)

    def get_widget_name_extension(self):
        _, name = os.path.split(self.loaded_file)
        return os.path.splitext(name)[0]

    def send_report(self):
        def get_ext_name(filename):
            try:
                return FileFormat.names[os.path.splitext(filename)[1]]
            except KeyError:
                return "unknown"

        if self.data is None:
            self.report_paragraph("File", "No file.")
            return

        if self.source == self.LOCAL_FILE:
            home = os.path.expanduser("~")
            if self.loaded_file.startswith(home):
                # os.path.join does not like ~
                name = "~" + os.path.sep + \
                       self.loaded_file[len(home):].lstrip("/").lstrip("\\")
            else:
                name = self.loaded_file
            if self.sheet_combo.isVisible():
                name += f" ({self.sheet_combo.currentText()})"
            self.report_items("File", [("File name", name),
                                       ("Format", get_ext_name(name))])
        else:
            self.report_items("Data", [("Resource", self.url),
                                       ("Format", get_ext_name(self.url))])

        self.report_data("Data", self.data)

    @staticmethod
    def dragEnterEvent(event):
        """Accept drops of valid file urls"""
        urls = event.mimeData().urls()
        if urls:
            try:
                FileFormat.get_reader(urls[0].toLocalFile())
                event.acceptProposedAction()
            except MissingReaderException:
                pass

    def dropEvent(self, event):
        """Handle file drops"""
        urls = event.mimeData().urls()
        if urls:
            self.add_path(urls[0].toLocalFile())  # add first file
            self.source = self.LOCAL_FILE
            self.load_data()

    def workflowEnvChanged(self, key, value, oldvalue):
        """
        Function called when environment changes (e.g. while saving the scheme)
        It make sure that all environment connected values are modified
        (e.g. relative file paths are changed)
        """
        self.update_file_list(key, value, oldvalue)
Пример #25
0
class OWFile(widget.OWWidget, RecentPathsWComboMixin):
    name = "领域编辑器2"
    icon = "icons/gear.svg"
    id = "orange.widgets.data.file"
    description = "Read data from an input file or network " \
                  "and send a data table to the output."

    priority = 10
    category = "Data"
    keywords = ["file", "load", "read", "open"]

    class Outputs:
        data = Output("领域背景", Table, doc="专业领域背景的介绍")

    want_main_area = False

    SEARCH_PATHS = [("sample-datasets", get_sample_datasets_dir())]
    SIZE_LIMIT = 1e7
    LOCAL_FILE, URL = range(2)

    settingsHandler = PerfectDomainContextHandler(
        match_values=PerfectDomainContextHandler.MATCH_VALUES_ALL)

    # Overload RecentPathsWidgetMixin.recent_paths to set defaults
    recent_paths = Setting([
        RecentPath("", "sample-datasets", "iris.tab"),
        RecentPath("", "sample-datasets", "titanic.tab"),
        RecentPath("", "sample-datasets", "housing.tab"),
        RecentPath("", "sample-datasets", "heart_disease.tab"),
    ])
    recent_urls = Setting([])
    source = Setting(LOCAL_FILE)
    xls_sheet = ContextSetting("")
    sheet_names = Setting({})
    url = Setting("")

    variables = ContextSetting([])

    domain_editor = SettingProvider(DomainEditor)

    ##用于警告代码可以无视
    class Warning(widget.OWWidget.Warning):
        file_too_big = widget.Msg(
            "The file is too large to load automatically."
            " Press Reload to load.")
        load_warning = widget.Msg("Read warning:\n{}")
##用于报错代码可以无视

    class Error(widget.OWWidget.Error):
        file_not_found = widget.Msg("File not found.")
        missing_reader = widget.Msg("Missing reader.")
        sheet_error = widget.Msg("Error listing available sheets.")
        unknown = widget.Msg("Read error:\n{}")

    def __init__(self):
        super().__init__()
        RecentPathsWComboMixin.__init__(self)
        self.domain = None
        self.data = None
        self.loaded_file = ""
        self.reader = None

        layout = QGridLayout()  ##画布的布局,使用网格划分的方式
        gui.widgetBox(self.controlArea, margin=20, orientation=layout)
        vbox = gui.radioButtons(None,
                                self,
                                "source",
                                box=True,
                                addSpace=True,
                                callback=self.load_data,
                                addToLayout=False)

        rb_button = gui.appendRadioButton(vbox, "File:", addToLayout=False)
        layout.addWidget(rb_button, 0, 0, Qt.AlignVCenter)  #确定位置0,0

        box = gui.hBox(None, addToLayout=False, margin=0)  #水平box
        box.setSizePolicy(Policy.MinimumExpanding, Policy.Fixed)  #设置size
        self.file_combo.setSizePolicy(Policy.MinimumExpanding,
                                      Policy.Fixed)  # 按钮和下拉菜单的联合体
        self.file_combo.activated[int].connect(
            self.select_file)  ##使用.connect(功能函数)来实现与功能函数的连接
        box.layout().addWidget(self.file_combo)
        layout.addWidget(box, 0, 1)  #确定位置0,1

        file_button = gui.button(None,
                                 self,
                                 '...',
                                 callback=self.browse_file,
                                 autoDefault=False)
        file_button.setIcon(self.style().standardIcon(QStyle.SP_DirOpenIcon))
        file_button.setSizePolicy(Policy.Maximum, Policy.Fixed)
        layout.addWidget(file_button, 0, 2)

        reload_button = gui.button(None,
                                   self,
                                   "Reload",
                                   callback=self.load_data,
                                   autoDefault=False)
        reload_button.setIcon(self.style().standardIcon(
            QStyle.SP_BrowserReload))
        reload_button.setSizePolicy(Policy.Fixed, Policy.Fixed)
        layout.addWidget(reload_button, 0, 3)

        ## 含Information的box设置
        box = gui.widgetBox(self.controlArea, "Info")
        self.info = gui.widgetLabel(box, '请设置领域特征')
        # self.warnings = gui.widgetLabel(box, '')

        ##下面几句控制含有table的box
        box = gui.widgetBox(self.controlArea, "双击进行编辑")
        self.domain_editor = DomainEditor(self)  ##对table操作的事情在DomainEditor内部定义
        self.editor_model = self.domain_editor.model()  ##设置与Apply激活状态有关
        box.layout().addWidget(self.domain_editor)

        ## Apply 按钮
        box = gui.hBox(self.controlArea)
        # gui.button(
        #     box, self, "Browse documentation datasets",
        #     callback=lambda: self.browse_file(True), autoDefault=False)
        # gui.rubber(box)
        self.apply_button = gui.button(box,
                                       self,
                                       "应用",
                                       callback=self.apply_domain_edit)
        self.apply_button.setEnabled(False)
        self.apply_button.setFixedWidth(170)

        # print('editor_model',self.editor_model)
        ## 如果数据改变就激活apply按钮.dataChange表示是否改变数据
        self.editor_model.dataChanged.connect(
            lambda: self.apply_button.setEnabled(True))

        self.set_file_list()  ##设置文件列表中的项
        # Must not call open_file from within __init__. open_file
        # explicitly re-enters the event loop (by a progress bar)

        self.setAcceptDrops(True)  ##表示接受响应释放操作

        if self.source == self.LOCAL_FILE:
            last_path = self.last_path()
            if last_path and os.path.exists(last_path) and \
                    os.path.getsize(last_path) > self.SIZE_LIMIT:
                self.Warning.file_too_big()
                return

        ##QTimer.singleShot()表示在s秒后调用一个槽函数(self.load_data)
        QTimer.singleShot(0, self.load_data)

    def sizeHint(self):
        return QSize(600, 550)

    def select_file(self, n):
        assert n < len(self.recent_paths)
        super().select_file(n)
        if self.recent_paths:
            self.source = self.LOCAL_FILE
            self.load_data()
            self.set_file_list()

## 读取文件

    def browse_file(self, in_demos=False):
        if in_demos:
            start_file = get_sample_datasets_dir()
            if not os.path.exists(start_file):
                QMessageBox.information(
                    None, "File",
                    "Cannot find the directory with documentation datasets")
                return
        else:
            start_file = self.last_path() or os.path.expanduser("~/")

        readers = [
            f for f in FileFormat.formats
            if getattr(f, 'read', None) and getattr(f, "EXTENSIONS", None)
        ]
        filename, reader, _ = open_filename_dialog(start_file, None, readers)
        if not filename:
            return
        self.add_path(filename)
        if reader is not None:
            self.recent_paths[0].file_format = reader.qualified_name()

        self.source = self.LOCAL_FILE
        self.load_data()

## 获取数据self.data,方式是调用了_try_load函数,并且将数据send到Output的channel中
# Open a file, create data from it and send it over the data channel

    def load_data(self):
        # We need to catch any exception type since anything can happen in
        # file readers
        self.closeContext()  ##重新设置widget 的context
        self.domain_editor.set_domain(None)  #把domain设置为None
        self.apply_button.setEnabled(False)  #把apply button设置为不可见
        self.clear_messages()
        self.set_file_list()

        ##这句话判断数据导入是否有错误
        error = self._try_load()
        if error:
            error()
            self.data = None
            # self.sheet_box.hide()
            self.Outputs.data.send(None)
            self.info.setText("无数据.")

    ## 导入数据的核心方法:获取self.data数据,同时判断这个出错可能性
    def _try_load(self):
        # pylint: disable=broad-except
        if self.last_path() and not os.path.exists(self.last_path()):
            return self.Error.file_not_found

        try:
            self.reader = self._get_reader()  ##这里获取reader
            assert self.reader is not None
        except Exception:
            return self.Error.missing_reader

        try:
            self._update_sheet_combo()
        except Exception:
            return self.Error.sheet_error

        with catch_warnings(record=True) as warnings:
            try:
                data = self.reader.read()  ##通过这句话读取数据,这是的data已经是table型数据了
                print('jia', type(data))
            except Exception as ex:
                log.exception(ex)
                return lambda x=ex: self.Error.unknown(str(x))
            if warnings:
                self.Warning.load_warning(warnings[-1].message.args[0])

        self.info.setText(self._describe(data))  #描述info的text

        self.loaded_file = self.last_path()  ##描述文档地址

        add_origin(data, self.loaded_file)
        self.data = data
        # print('liangyue',dir(self.data))
        self.openContext(data.domain)

        # print('data',data)
        self.apply_domain_edit()  # sends data

## 获取导入文件的格式

    def _get_reader(self):
        """

        Returns
        -------
        FileFormat
        """
        if self.source == self.LOCAL_FILE:
            path = self.last_path()
            if self.recent_paths and self.recent_paths[0].file_format:
                qname = self.recent_paths[0].file_format
                reader_class = class_from_qualified_name(qname)
                reader = reader_class(path)
                print('reader_class', reader_class)
            else:
                reader = FileFormat.get_reader(path)
                # Return reader instance that can be used to read the file
            if self.recent_paths and self.recent_paths[0].sheet:
                reader.select_sheet(self.recent_paths[0].sheet)

            return reader
        elif self.source == self.URL:
            url = self.url_combo.currentText().strip()
            if url:
                return UrlReader(url)

## 更新file的下拉列表中的内容

    def _update_sheet_combo(self):
        if len(self.reader.sheets) < 2:
            # self.sheet_box.hide()
            self.reader.select_sheet(None)
            return

        self.sheet_combo.clear()
        self.sheet_combo.addItems(self.reader.sheets)
        self._select_active_sheet()
        # self.sheet_box.show()

    def _select_active_sheet(self):
        if self.reader.sheet:
            try:
                idx = self.reader.sheets.index(self.reader.sheet)
                self.sheet_combo.setCurrentIndex(idx)
            except ValueError:
                # Requested sheet does not exist in this file
                self.reader.select_sheet(None)
        else:
            self.sheet_combo.setCurrentIndex(0)


## 下面是info的描述语句

    def _describe(self, table):
        domain = table.domain
        text = ""

        attrs = getattr(table, "attributes", {})
        descs = [
            attrs[desc] for desc in ("Name", "Description") if desc in attrs
        ]
        if len(descs) == 2:
            descs[0] = "<b>{}</b>".format(descs[0])
        if descs:
            text += "<p>{}</p>".format("<br/>".join(descs))

        text += "<p>{} 个实例数据(s), {} 个输入特征(s), {} 个元特征(s)".\
            format(len(table), len(domain.attributes), len(domain.metas))
        if domain.has_continuous_class:
            text += "<br/>回归模型 ."
        elif domain.has_discrete_class:
            text += "<br/>分类模型; 共分为 {} 类.".\
                format(len(domain.class_var.values))
        elif table.domain.class_vars:
            text += "<br/>多目标模型; {} 个目标".format(len(table.domain.class_vars))
        else:
            text += "<br/>无目标值."
        text += "</p>"

        if 'Timestamp' in table.domain:
            # Google Forms uses this header to timestamp responses
            text += '<p>First entry: {}<br/>Last entry: {}</p>'.format(
                table[0, 'Timestamp'], table[-1, 'Timestamp'])
        return text

    def storeSpecificSettings(self):
        self.current_context.modified_variables = self.variables[:]

    def retrieveSpecificSettings(self):
        if hasattr(self.current_context, "modified_variables"):
            self.variables[:] = self.current_context.modified_variables

    ## 对Ourputs的data赋值为table
    def apply_domain_edit(self):
        if self.data is None:
            table = None
        else:
            domain, cols = self.domain_editor.get_domain(
                self.data.domain, self.data)
            printData = self.data
            printDomain = self.data.domain
            if not (domain.variables or domain.metas):
                table = None
            else:
                X, y, m = cols
                #X是输入,domain.attributes;y是输出class_var;m是元特征
                ## 下面解决将self.data的数据付给了table。
                # 1data's name; 2数据编号ids;3数据属性attributes
                table = Table.from_numpy(domain, X, y, m, self.data.W)
                table.name = self.data.name
                index = self.data.ids
                table.ids = np.array(self.data.ids)
                # print('ids',table.ids)

                data = self.data
                table.attributes = getattr(self.data, 'attributes', {})
                ## 将table的属性定义为{}
                ''' 对Ourputs的data赋值为table'''
        # print('table is :',table)
        # print('table domain',table.domain)
        # print('table name',table.name)
        # print('table class_var name',table.domain.class_vars[0].name)
        self.Outputs.data.send(table)
        self.apply_button.setEnabled(False)

    def get_widget_name_extension(self):
        _, name = os.path.split(self.loaded_file)
        return os.path.splitext(name)[0]

    def send_report(self):
        def get_ext_name(filename):
            try:
                return FileFormat.names[os.path.splitext(filename)[1]]
            except KeyError:
                return "unknown"

        if self.data is None:
            self.report_paragraph("File", "No file.")
            return

        if self.source == self.LOCAL_FILE:
            home = os.path.expanduser("~")
            if self.loaded_file.startswith(home):
                # os.path.join does not like ~
                name = "~" + os.path.sep + \
                       self.loaded_file[len(home):].lstrip("/").lstrip("\\")
            else:
                name = self.loaded_file
            if self.sheet_combo.isVisible():
                name += " ({})".format(self.sheet_combo.currentText())
            self.report_items("File", [("File name", name),
                                       ("Format", get_ext_name(name))])
        else:
            self.report_items("Data", [("Resource", self.url),
                                       ("Format", get_ext_name(self.url))])

        self.report_data("Data", self.data)

    def dragEnterEvent(self, event):
        """Accept drops of valid file urls"""
        urls = event.mimeData().urls()
        if urls:
            try:
                FileFormat.get_reader(
                    OSX_NSURL_toLocalFile(urls[0]) or urls[0].toLocalFile())
                event.acceptProposedAction()
            except IOError:
                pass

    def dropEvent(self, event):
        """Handle file drops"""
        urls = event.mimeData().urls()
        if urls:
            self.add_path(
                OSX_NSURL_toLocalFile(urls[0])
                or urls[0].toLocalFile())  # add first file
            self.source = self.LOCAL_FILE
            self.load_data()

    def workflowEnvChanged(self, key, value, oldvalue):
        """
        Function called when environment changes (e.g. while saving the scheme)
        It make sure that all environment connected values are modified
        (e.g. relative file paths are changed)
        """
        self.update_file_list(key, value, oldvalue)
Пример #26
0
class OWVcfFile(widget.OWWidget, RecentPathsWComboMixin):
    name = "VCF File"
    id = "orangecontrib.variants.widgets.vcf"
    description = "Read data from a VCF file."
    icon = "icons/VCFFile.svg"
    priority = 10
    category = "Variants"
    keywords = ["data", "vcf", "file", "load", "read"]

    class Outputs:
        data = Output(
            "Data",
            Table,
            doc="Attribute-valued data set read from the input file.")

    want_main_area = False

    SEARCH_PATHS = [("sample-datasets", get_sample_datasets_dir())]
    SIZE_LIMIT = 1e7

    settingsHandler = PerfectDomainContextHandler(
        match_values=PerfectDomainContextHandler.MATCH_VALUES_ALL)

    # Overload RecentPathsWidgetMixin.recent_paths to set defaults
    recent_paths = Setting([
        RecentPath("", "sample-datasets", "small.vcf"),
    ])
    quality = Setting(1)
    cb_qual = Setting(True)
    frequency = Setting(1)
    cb_freq = Setting(True)

    class Warning(widget.OWWidget.Warning):
        file_too_big = widget.Msg(
            "The file is too large to load automatically."
            " Press Reload to load.")

    class Error(widget.OWWidget.Error):
        file_not_found = widget.Msg("File not found.")

    def __init__(self):
        super().__init__()
        RecentPathsWComboMixin.__init__(self)
        self.domain = None
        self.variants = None
        self.table = None
        self.loaded_file = ""

        layout = QGridLayout()
        gui.widgetBox(self.controlArea, margin=0, orientation=layout)
        label = gui.widgetLabel(self, " File:  ")
        layout.addWidget(label, 0, 0, Qt.AlignVCenter)

        box = gui.hBox(None, addToLayout=False, margin=0)
        box.setSizePolicy(Policy.MinimumExpanding, Policy.Fixed)
        self.file_combo.setSizePolicy(Policy.MinimumExpanding, Policy.Fixed)
        self.file_combo.activated[int].connect(self.select_file)
        box.layout().addWidget(self.file_combo)
        layout.addWidget(box, 0, 1)

        file_button = gui.button(None,
                                 self,
                                 '...',
                                 callback=self.browse_file,
                                 autoDefault=False)
        file_button.setIcon(self.style().standardIcon(QStyle.SP_DirOpenIcon))
        file_button.setSizePolicy(Policy.Maximum, Policy.Fixed)
        layout.addWidget(file_button, 0, 2)

        reload_button = gui.button(None,
                                   self,
                                   "Reload",
                                   callback=self.load_data,
                                   autoDefault=False)
        reload_button.setIcon(self.style().standardIcon(
            QStyle.SP_BrowserReload))
        reload_button.setSizePolicy(Policy.Fixed, Policy.Fixed)
        layout.addWidget(reload_button, 0, 3)

        box = gui.vBox(self.controlArea, "Info")
        self.info = gui.widgetLabel(box, 'No data loaded.')
        self.warnings = gui.widgetLabel(box, '')

        def enable_apply():
            self.apply_button.setEnabled(True)

        box = gui.vBox(self.controlArea, "Filtering")
        _, qspin = gui.spin(box,
                            self,
                            'quality',
                            0,
                            999,
                            step=1,
                            label='Quality threshold (QT)',
                            callback=enable_apply,
                            checked='cb_qual',
                            checkCallback=enable_apply)
        qspin.setToolTip("Minimum quality to use reads.")
        _, fspin = gui.spin(box,
                            self,
                            'frequency',
                            0,
                            999,
                            step=1,
                            label='Frequency threshold (FT)',
                            callback=enable_apply,
                            checked='cb_freq',
                            checkCallback=enable_apply)
        fspin.setToolTip("Keep only variants with at least this many "
                         "occurrences of alternative alleles.")

        gui.rubber(self.controlArea)

        box = gui.hBox(self.controlArea)
        box.layout().addWidget(self.report_button)
        self.report_button.setFixedWidth(170)
        gui.rubber(box)

        self.apply_button = gui.button(box, self, "Apply", callback=self.apply)
        self.apply_button.setEnabled(False)
        self.apply_button.setFixedWidth(170)

        self.set_file_list()
        # Must not call open_file from within __init__. open_file
        # explicitly re-enters the event loop (by a progress bar)

        self.setAcceptDrops(True)

        last_path = self.last_path()
        if last_path and os.path.exists(last_path) and \
                os.path.getsize(last_path) > self.SIZE_LIMIT:
            self.Warning.file_too_big()
            return

        QTimer.singleShot(0, self.load_data)

    def sizeHint(self):
        return QSize(500, 200)

    def select_file(self, n):
        assert n < len(self.recent_paths)
        super().select_file(n)
        if self.recent_paths:
            self.load_data()
            self.set_file_list()

    def browse_file(self):
        start_file = self.last_path() or os.path.expanduser("~/")
        dialog_formats = "VCF files (*.vcf);;All files (*)"

        filename, _ = QFileDialog.getOpenFileName(self,
                                                  'Open Orange Data File',
                                                  start_file, dialog_formats)
        if not filename:
            return
        self.add_path(filename)
        self.load_data()

    # Open a file, create data from it and send it over the data channel
    def load_data(self):
        # We need to catch any exception type since anything can happen in
        # file readers
        # pylint: disable=broad-except
        self.apply_button.setEnabled(False)
        self.clear_messages()
        self.set_file_list()
        if not self.last_path() or not os.path.exists(self.last_path()):
            if self.last_path():
                self.Error.file_not_found()
            self.Outputs.data.send(None)
            self.info.setText("No data.")
            return

        error = None

        if not error:
            with catch_warnings(record=True) as warnings:
                try:
                    variants = VariantData(self.last_path())
                except Exception as ex:
                    log.exception(ex)
                    error = ex
                self.warning(warnings[-1].message.args[0] if warnings else '')

        if error:
            self.variants = self.table = None
            self.Outputs.data.send(None)
            self.info.setText("An error occurred:\n{}".format(error))
            return

        self.loaded_file = self.last_path()
        self.variants = variants
        self.apply()  # sends data

    def update_info(self):
        pl = lambda x: '' if x == 1 else 's'
        text = ""
        if self.variants is not None:
            nsamples, nvariants = self.variants.gt.T.shape
            text += ("<p>Before filtering:<br/>" +
                     "&nbsp; {} sample{}, {} variant{}</p>").\
                format(nsamples, pl(nsamples), nvariants, pl(nvariants), )
        if self.table is not None:
            nsamples, nvariants = self.table.X.shape
            below = np.isnan(self.table.X).sum() / self.table.X.size * 100
            text += ("<p>After filtering:<br/>" +
                     "&nbsp; {} sample{}, {} variant{}<br/>" +
                     "&nbsp; {:.2f}% reads below QT</p>").\
                format(nsamples, pl(nsamples), nvariants, pl(nvariants), below)
        self.info.setText(text)

    def apply(self):
        if self.variants is None:
            self.table = None
        else:
            q = self.quality if self.cb_qual else None
            f = self.frequency if self.cb_freq else None
            self.table = self.variants.get_data(q, f)

        self.update_info()
        self.Outputs.data.send(self.table)
        self.apply_button.setEnabled(False)

    def get_widget_name_extension(self):
        _, name = os.path.split(self.loaded_file)
        return os.path.splitext(name)[0]

    def send_report(self):
        if self.table is None:
            self.report_paragraph("VCF File", "No file.")
            return
        home = os.path.expanduser("~")
        if self.loaded_file.startswith(home):
            # os.path.join does not like ~
            name = "~" + os.path.sep + \
                   self.loaded_file[len(home):].lstrip("/").lstrip("\\")
        else:
            name = self.loaded_file
        self.report_items("VCF File", [
            ("File name", name),
        ])
        parameters = [("Quality", self.quality, self.cb_qual),
                      ("Frequency", self.frequency, self.cb_freq)]
        self.report_items("Filtering parameters",
                          [(name, value)
                           for name, value, enabled in parameters if enabled])
        self.report_data("Data", self.table)

    def dragEnterEvent(self, event):
        """Accept drops of valid file urls"""
        urls = event.mimeData().urls()
        if urls:
            try:
                FileFormat.get_reader(
                    OSX_NSURL_toLocalFile(urls[0]) or urls[0].toLocalFile())
                event.acceptProposedAction()
            except IOError:
                pass

    def dropEvent(self, event):
        """Handle file drops"""
        urls = event.mimeData().urls()
        if urls:
            self.add_path(
                OSX_NSURL_toLocalFile(urls[0])
                or urls[0].toLocalFile())  # add first file
            self.load_data()