def __init__(self, host):
AnalysisModule.__init__(self, host)
if self.dataModel is None:
raise Exception(
"Photostim analysis module requires a data model, but none is loaded yet."
)
self.dbIdentity = "Photostim" ## how we identify to the database; this determines which tables we own
self.selectedSpot = None
## setup analysis flowchart
modPath = os.path.abspath(os.path.split(__file__)[0])
flowchartDir = os.path.join(modPath, "analysis_fc")
self.flowchart = Flowchart(filePath=flowchartDir)
self.flowchart.addInput('events')
self.flowchart.addInput('regions')
self.flowchart.addInput('fileHandle')
self.flowchart.addOutput('dataOut')
self.analysisCtrl = self.flowchart.widget()
## color mapper
self.mapper = ColorMapper.ColorMapper(
filePath=os.path.join(modPath, "colormaps"))
self.mapCtrl = QtGui.QWidget()
self.mapLayout = QtGui.QVBoxLayout()
self.mapCtrl.setLayout(self.mapLayout)
self.mapLayout.splitter = QtGui.QSplitter()
self.mapLayout.splitter.setOrientation(QtCore.Qt.Vertical)
self.mapLayout.splitter.setContentsMargins(0, 0, 0, 0)
self.mapLayout.addWidget(self.mapLayout.splitter)
self.mapLayout.splitter.addWidget(self.analysisCtrl)
#self.mapLayout.splitter.addWidget(QtGui.QSplitter())
self.mapLayout.splitter.addWidget(self.mapper)
#self.mapLayout.splitter.addWidget(self.recolorBtn)
self.recolorLayout = QtGui.QHBoxLayout()
self.recolorWidget = QtGui.QWidget()
self.mapLayout.splitter.addWidget(self.recolorWidget)
self.recolorWidget.setLayout(self.recolorLayout)
self.recolorBtn = QtGui.QPushButton('Recolor')
self.recolorLayout.addWidget(self.recolorBtn)
self.recolorParallelCheck = QtGui.QCheckBox('Parallel')
self.recolorParallelCheck.setChecked(True)
self.recolorLayout.addWidget(self.recolorParallelCheck)
## scatter plot
self.scatterPlot = ScatterPlotter()
self.scatterPlot.sigClicked.connect(self.scatterPlotClicked)
## setup map DB ctrl
self.dbCtrl = DBCtrl(self, self.dbIdentity)
## storage for map data
#self.scanItems = {}
self.scans = []
#self.seriesScans = {}
self.maps = []
## create event detector
fcDir = os.path.join(os.path.abspath(os.path.split(__file__)[0]),
"detector_fc")
self.detector = EventDetector.EventDetector(
host, flowchartDir=fcDir, dbIdentity=self.dbIdentity + '.events')
## override some of its elements
self.detector.setElement('File Loader', self)
self.detector.setElement('Database', self.dbCtrl)
## Create element list, importing some gui elements from event detector
elems = self.detector.listElements()
self._elements_ = OrderedDict([
('Database', {
'type': 'ctrl',
'object': self.dbCtrl,
'size': (300, 600)
}),
('Scatter Plot', {
'type': 'ctrl',
'object': self.scatterPlot,
'pos': ('right', ),
'size': (700, 400)
}),
('Canvas', {
'type': 'canvas',
'pos': ('above', 'Scatter Plot'),
'size': (700, 400),
'allowTransforms': False,
'hideCtrl': True,
'args': {
'name': 'Photostim'
}
}),
#('Maps', {'type': 'ctrl', 'pos': ('bottom', 'Database'), 'size': (200,200), 'object': self.mapDBCtrl}),
('Map Opts', {
'type': 'ctrl',
'object': self.mapCtrl,
'pos': ('above', 'Database'),
'size': (300, 600)
}),
('Detection Opts',
elems['Detection Opts'].setParams(pos=('above', 'Map Opts'),
size=(300, 600))),
('File Loader', {
'type': 'fileInput',
'size': (300, 300),
'pos': ('above', 'Detection Opts'),
'host': self,
'showFileTree': False
}),
('Data Plot', elems['Data Plot'].setParams(pos=('bottom',
'Canvas'),
size=(700, 200))),
('Filter Plot', elems['Filter Plot'].setParams(pos=('bottom',
'Data Plot'),
size=(700, 200))),
('Event Table',
elems['Output Table'].setParams(pos=('below', 'Filter Plot'),
size=(700, 200))),
('Stats', {
'type': 'dataTree',
'size': (700, 200),
'pos': ('below', 'Event Table')
}),
])
self.initializeElements()
try:
## load default chart
self.flowchart.loadFile(os.path.join(flowchartDir, 'default.fc'))
except:
debug.printExc('Error loading default flowchart:')
self.detector.flowchart.sigOutputChanged.connect(
self.detectorOutputChanged)
self.flowchart.sigOutputChanged.connect(self.analyzerOutputChanged)
self.detector.flowchart.sigStateChanged.connect(
self.detectorStateChanged)
self.flowchart.sigStateChanged.connect(self.analyzerStateChanged)
self.recolorBtn.clicked.connect(self.recolor)
