def __init__(self):
if not HospitalServerInfo.is_init:
self.inhospital_pat_data = dict()
self.inhospital_pat_num = dict()
self.discharge_pat_data = dict()
self.discharge_pat_num = dict()
self.ward_code_list = list()
self.mongo_pull_utils = PullDataFromMDBUtils()
self.logger = LogUtils().getLogger('backend')
self.parameters = Properties()
self.conf_dict = self.parameters.conf_dict.copy()
self.dept_dict = self.parameters.dept_dict.copy()
self.ward_dept = self.parameters.ward_dept.copy()
self.hospital_code = self.parameters.properties.get(
'hospital_code')
self.database_ip = self.parameters.properties.get('mongo_host')
if cur_path.endswith('Test'):
self.mr_client_url = self.conf_dict['mr_url'].get(
self.database_ip, dict()).get('test', '')
self.collection_name_doctor = self.mongo_pull_utils.mongodb_collection_name_doctor + '_test' # 医生端数据库
else:
self.mr_client_url = self.conf_dict['mr_url'].get(
self.database_ip, dict()).get('release', '')
self.collection_name_doctor = self.mongo_pull_utils.mongodb_collection_name_doctor
if not self.ward_code_list:
self.ward_code_list = self.get_ward_code()
HospitalServerInfo.is_init = True
def wrapper(*args, **kwargs):
logger = LogUtils().getLogger('backend')
try:
return func(*args, **kwargs)
except:
logger.error(traceback.format_exc())
exc_type, exc_value, exc_traceback_obj = sys.exc_info()
try:
r = HttpResponse(
json.dumps({
'error_func':
func.__name__,
'error_info':
'.'.join(exc_value.args),
'error_type':
exc_type.__name__,
'abnormal_info':
''.join(traceback.format_tb(exc_traceback_obj)),
'res_flag':
False
}))
except:
r = HttpResponse(
json.dumps({
'error_func':
func.__name__,
'abnormal_info':
''.join(traceback.format_tb(exc_traceback_obj)),
'res_flag':
False
}))
r.status_code = 500
return r
def runRegularScheduled():
"""
每天定时跑终末质控
"""
logger = LogUtils().getLogger('scheduledTasks')
try:
runZhongmo()
except:
logger.error(traceback.format_exc())
return False
def runZhongmo():
"""
每天更新终末库数据
"""
app = CheckMultiRecords(debug=True)
logger = LogUtils().getLogger('scheduledTasks')
parameter = Properties()
try:
day_delta = int(parameter.properties.get('extract_interval',
'1')) + 1 # 质控比抽取间隔要多一天
today = datetime.now()
yesterday = today - timedelta(day_delta)
if today.day == 1:
collection_ori = app.PushData.mongodb_collection_name + '_last_two_month'
rename_collection = app.PushData.mongodb_collection_name + '_last_two_month_bak'
collection = app.PushData.connectCollection(
database_name=app.PushData.mongodb_database_name,
collection_name=collection_ori)
try:
collection.rename(rename_collection, dropTarget=True)
except:
logger.warning('No collection {0}'.format(collection_ori))
collection_ori = app.PushData.mongodb_collection_name + '_last_month'
rename_collection = app.PushData.mongodb_collection_name + '_last_two_month'
collection = app.PushData.connectCollection(
database_name=app.PushData.mongodb_database_name,
collection_name=collection_ori)
try:
collection.rename(rename_collection, dropTarget=True)
except:
logger.warning('No collection {0}'.format(collection_ori))
collection_ori = app.PushData.mongodb_collection_name + '_this_month'
rename_collection = app.PushData.mongodb_collection_name + '_last_month'
collection = app.PushData.connectCollection(
database_name=app.PushData.mongodb_database_name,
collection_name=collection_ori)
try:
collection.rename(rename_collection, dropTarget=True)
except:
logger.warning('No collection {0}'.format(collection_ori))
app.time_limits = {
"binganshouye.pat_visit.discharge_time": {
"$gte": yesterday.strftime('%Y-%m-%d')
}
}
app.PushData.mongodb_collection_name += '_zhongmo'
app.process(True)
app.process_supplement(collection_name=parameter.properties.get(
'collection_name', 'MedicalRecordQuality')) # 只存终末的三个月数据
return True
except:
logger.error(traceback.format_exc())
return False
def __init__(self):
if not GainSynonym.is_init:
self.parameters = Properties()
self.logger = LogUtils().getLogger('synonym')
self.log_info = """hospital_code: [{0}], version: [{1}], serverip: [{2}], request_add: [{3}], request_data: [{4}],
response_text: [{5}], response_code: [{6}], error_type: [{7}], error_content: [{8}], abnormal_info: [\n{9}], take_times: [{10:.2f}]s"""
self.hospital_code = self.parameters.properties.get('hospital_code')
self.ver = self.parameters.properties.get('version')
self.synonym_host = self.parameters.properties.get('synonym_host')
self.synonym_port = self.parameters.properties.get('synonym_port')
GainSynonym.is_init = True
def __init__(self):
if not GainKnowledgeGraph.IS_INIT:
self.parameters = Properties()
self.logger = LogUtils().getLogger('es_search')
self.log_info = """hospital_code: [{0}], version: [{1}], serverip: [{2}], request_add: [{3}], request_data: [{4}],
response_text: [{5}], response_code: [{6}], error_type: [{7}], error_content: [{8}], abnormal_info: [\n{9}], take_times: [{10:.2f}]s"""
knowledge_host = self.parameters.properties.get('knowledge_host')
knowledge_port = self.parameters.properties.get('knowledge_port')
self.hospital_code = self.parameters.properties.get('hospital_code')
self.ver = self.parameters.properties.get('version')
self.standard_add = 'http://{}:{}/med/cdss/standardFromAliasList.json'.format(knowledge_host, knowledge_port)
self.relationship_add = 'http://{}:{}/med/cdss/isFatherOrSon.json'.format(knowledge_host, knowledge_port)
self.medicine_add = 'http://{}:{}/med/edit/searchKnowledge.json'.format(knowledge_host, knowledge_port)
GainKnowledgeGraph.IS_INIT = True
def hospital_server_info():
"""
定时请求电子病历服务器Webservice，获取在院/出院患者数据，医生患者数
"""
logger = LogUtils().getLogger('scheduledTasks')
try:
app = HospitalServerInfo()
print('start {0}'.format(app))
app.get_inhospitalpatdata()
app.get_inhospitalpatnum()
app.get_dischargepatdata()
app.get_dischargepatnum()
print('end {0}'.format(app))
except:
logger.error(traceback.format_exc())
def __init__(self, debug=False):
self.debug = debug
# region 从properties文件中获取资源配置信息
self.parameters = Properties()
self.logger = LogUtils().getLogger("MongoUtils")
self.mongodb_host = self.parameters.properties.get('mongo_host')
self.mongodb_port = eval(self.parameters.properties.get('mongo_port'))
self.mongodb_database_name = self.parameters.properties.get('mongodb')
self.mongodb_collection_name = self.parameters.properties.get('collection_name')
self.mongodb_collection_name_doctor = '{}_doctor'.format(self.mongodb_collection_name)
self.username_wr = self.parameters.properties.get('username_write_read')
self.password_wr = self.parameters.properties.get('password_write_read')
self.record_host = self.parameters.properties.get('record_host')
self.record_port = eval(self.parameters.properties.get('record_port'))
self.record_database = self.parameters.properties.get('record_mongodb')
# endregion
# 数据库的连接操作
self.client = MongoClient(host=self.mongodb_host, port=self.mongodb_port, connect=False)
self.record_client = MongoClient(host=self.record_host, port=self.record_port, connect=False)
self.record_db = self.record_client.get_database(name=self.record_database)
if self.parameters.properties.get('record_auth') in ['true', 'True']:
username = self.parameters.properties.get('record_username')
password = self.parameters.properties.get('record_password')
self.record_db.authenticate(username, password)
self.authed = False
def __init__(self):
if not GainESSearch.IS_INIT:
self.parameters = Properties()
self.logger = LogUtils().getLogger('es_search')
self.log_info = """hospital_code: [{0}], version: [{1}], serverip: [{2}], request_add: [{3}], request_data: [{4}],
response_text: [{5}], response_code: [{6}], error_type: [{7}], error_content: [{8}], abnormal_info: [\n{9}], take_times: [{10:.2f}]s"""
es_host = self.parameters.properties.get('es_host')
es_port = self.parameters.properties.get('es_port')
self.hospital_code = self.parameters.properties.get('hospital_code')
self.ver = self.parameters.properties.get('version')
if es_port == '0':
es_add = "{}/search/bysy".format(es_host)
else:
es_add = "{}:{}".format(es_host, es_port)
self.id_add = 'http://{}/med/advanced/allVariableJilian.json'.format(es_add)
self.record_add = 'http://{}/med/quality/getWenshuData.json'.format(es_add)
self.record_list_add = 'http://{}/med/advanced/query/patients.json'.format(es_add)
GainESSearch.IS_INIT = True
def processJsonFileBingan(request):
logger_seg = LogUtils().getLogger('segment')
app = ClientInterface()
if request.method == 'POST':
if request.content_type == 'text/plain':
data = request.body
data = data.decode('utf-8')
if not data:
data = '{}'
json_file = json.loads(data)
if os.path.abspath(os.path.dirname(__file__)).endswith('Test'):
logger_seg.info(json_file)
result = app.processJsonFileBingan(
json_file=json_file) # 这里获取医生姓名和id
return HttpResponse(json.dumps(result))
elif request.content_type == 'multipart/form-data':
json_file = request.POST
if os.path.abspath(os.path.dirname(__file__)).endswith('Test'):
logger_seg.info(json_file)
result = app.processJsonFileBingan(json_file=json_file)
return HttpResponse(json.dumps(result))
else:
return HttpResponse(json.dumps({}))
def removeTableMrq():
"""
每天从mrq表中删除春光入库了的数据
"""
logger = LogUtils().getLogger('scheduledTasks')
try:
app_mongo = PushDataFromMDBUtils()
db = app_mongo.connectDataBase(app_mongo.mongodb_database_name)
tables = db.list_collection_names()
for mrq_collection in tables:
if not mrq_collection.startswith('mrq_'):
continue
collection_name = mrq_collection.replace('mrq_', '')
conn_mrq = db.get_collection(mrq_collection)
conn = db.get_collection(collection_name)
conn_result = conn.find({}, {})
for data in conn_result:
conn_mrq.delete_one({'_id': data['_id']})
return True
except:
logger.error(traceback.format_exc())
return False
def calcTotalDocument():
"""
每天定时查询近三个月病案首页文档数,记录出院患者ID及其科室
"""
logger = LogUtils().getLogger('scheduledTasks')
app_mongo = PushDataFromMDBUtils()
app = StatisticPatientInfos()
conn = app_mongo.connectCollection(
database_name=app_mongo.mongodb_database_name,
collection_name='MedicalRecordQuality_zhongmo')
try:
this_month = app.this_month()
last_month = app.last_month()
last_two_month = app.last_two_month()
today = datetime.now()
if today.day == 1:
collection_ori = 'total_zhongmo_last_two_month'
rename_collection = 'total_zhongmo_last_two_month_bak'
collection = app_mongo.connectCollection(
database_name=app_mongo.mongodb_database_name,
collection_name=collection_ori)
try:
collection.rename(rename_collection, dropTarget=True)
except:
logger.warning('No collection {0}'.format(collection_ori))
collection_ori = 'total_zhongmo_last_month'
rename_collection = 'total_zhongmo_last_two_month'
collection = app_mongo.connectCollection(
database_name=app_mongo.mongodb_database_name,
collection_name=collection_ori)
try:
collection.rename(rename_collection, dropTarget=True)
except:
logger.warning('No collection {0}'.format(collection_ori))
collection_ori = 'total_zhongmo_this_month'
rename_collection = 'total_zhongmo_last_month'
collection = app_mongo.connectCollection(
database_name=app_mongo.mongodb_database_name,
collection_name=collection_ori)
try:
collection.rename(rename_collection, dropTarget=True)
except:
logger.warning('No collection {0}'.format(collection_ori))
mongo_result = conn.find(
{
'pat_info.discharge_time': {
'$gt': this_month[0],
'$lt': this_month[1]
}
}, {'pat_info.dept_discharge_from_name': 1})
for data in mongo_result:
push_data = {'_id': data['_id']}
if not data.get('pat_info',
dict()).get('dept_discharge_from_name'):
continue
push_data['dept'] = data['pat_info']['dept_discharge_from_name']
app_mongo.pushData('total_zhongmo_this_month', push_data)
mongo_result = conn.find(
{
'pat_info.discharge_time': {
'$gt': last_month[0],
'$lt': last_month[1]
}
}, {'pat_info.dept_discharge_from_name': 1})
for data in mongo_result:
push_data = {'_id': data['_id']}
if not data.get('pat_info',
dict()).get('dept_discharge_from_name'):
continue
push_data['dept'] = data['pat_info']['dept_discharge_from_name']
app_mongo.pushData('total_zhongmo_last_month', push_data)
mongo_result = conn.find(
{
'pat_info.discharge_time': {
'$gt': last_two_month[0],
'$lt': last_two_month[1]
}
}, {'pat_info.dept_discharge_from_name': 1})
for data in mongo_result:
push_data = {'_id': data['_id']}
if not data.get('pat_info',
dict()).get('dept_discharge_from_name'):
continue
push_data['dept'] = data['pat_info']['dept_discharge_from_name']
app_mongo.pushData('total_zhongmo_last_two_month', push_data)
return True
except:
logger.error(traceback.format_exc())
return False
import logging
from TestCases.FlashTestCases import FlashTestRun
from Utils.LogUtils import LogUtils
from Config.TestConfig import devices
"""
def main():
print('\n')
test1 = Test()
result = test1.testing('com254')
for re in result:
print(re)
print('-------------------------------------------------------')
"""
if __name__ == '__main__':
logging.debug('test running')
'''
test = Test()
while True:
result = test.testing_write('COM195' , 'ff')
time.sleep(2)
'''
# main()
test = FlashTestRun()
test.test_EMMC_pull_and_push(devices, 2)
LogUtils.com_log('com195')
# log.logcat_and_dmesg(dev ='62b72966', logon =True)
def processJsonFile(request):
logger_seg = LogUtils().getLogger('segment')
logger = LogUtils().getLogger('backend')
app = ClientInterface()
if request.method == 'POST':
if request.content_type == 'text/plain':
data = request.body
data = data.decode('utf-8')
if not data:
data = '{}'
json_file = json.loads(data)
if not json_file.get('wenshuxinxi', dict()).get('file_unique_id'):
logger.error("[{}#{}] no [file_unique_id]".format(
json_file.get('binganshouye',
dict()).get('patient_id', ''),
json_file.get('binganshouye', dict()).get('visit_id', '')))
if os.path.abspath(os.path.dirname(__file__)).endswith('Test'):
logger_seg.info(json_file)
result = app.processJsonFile(json_file=json_file) # 这里获取医生姓名和id
return HttpResponse(json.dumps(result))
elif request.content_type == 'multipart/form-data':
json_file = request.POST
if not json_file.get('wenshuxinxi', dict()).get('file_unique_id'):
logger.error("[{}#{}] no [file_unique_id]".format(
json_file.get('binganshouye',
dict()).get('patient_id', ''),
json_file.get('binganshouye', dict()).get('visit_id', '')))
if os.path.abspath(os.path.dirname(__file__)).endswith('Test'):
logger_seg.info(json_file)
result = app.processJsonFile(json_file=json_file)
return HttpResponse(json.dumps(result))
else:
return HttpResponse(json.dumps({}))
#!/usr/bin/env python3
# -*- coding:utf-8 -*
import os
import sys
cur_path = os.path.abspath(os.path.dirname(__file__))
root_path = os.path.split(cur_path)[0]
sys.path.append(root_path) # 项目路径添加到系统路径
import traceback
from MedicalQuality.mainProgram import CheckMultiRecords
from Utils.LogUtils import LogUtils
logger = LogUtils().getLogger("record_info")
logger_info = LogUtils().getLogger("run_info")
logger_error = LogUtils().getLogger("root")
class CheckSegmentWord(CheckMultiRecords):
def check_chief_content(self, time_limits):
try:
mongo_result = self.gain_info.collection_bingan.aggregate(
[{
"$match": time_limits
}, {
"$lookup": {
"from": 'ruyuanjilu',
"localField": "_id",
"foreignField": "_id",
"as": 'ruyuanjilu'
}
}, {
class GainESSearch(object):
IS_INIT = False
def __init__(self):
if not GainESSearch.IS_INIT:
self.parameters = Properties()
self.logger = LogUtils().getLogger('es_search')
self.log_info = """hospital_code: [{0}], version: [{1}], serverip: [{2}], request_add: [{3}], request_data: [{4}],
response_text: [{5}], response_code: [{6}], error_type: [{7}], error_content: [{8}], abnormal_info: [\n{9}], take_times: [{10:.2f}]s"""
es_host = self.parameters.properties.get('es_host')
es_port = self.parameters.properties.get('es_port')
self.hospital_code = self.parameters.properties.get('hospital_code')
self.ver = self.parameters.properties.get('version')
if es_port == '0':
es_add = "{}/search/bysy".format(es_host)
else:
es_add = "{}:{}".format(es_host, es_port)
self.id_add = 'http://{}/med/advanced/allVariableJilian.json'.format(es_add)
self.record_add = 'http://{}/med/quality/getWenshuData.json'.format(es_add)
self.record_list_add = 'http://{}/med/advanced/query/patients.json'.format(es_add)
GainESSearch.IS_INIT = True
def __new__(cls, *args, **kwargs):
"""
单例模式
"""
if not hasattr(cls, 'instance'):
cls.instance = super(GainESSearch, cls).__new__(cls)
return cls.instance
def _requestMethod(self, url, data, start_time, input_info):
res = {'res_flag': False}
r = requests.post(url, data=data, timeout=5)
if r.status_code != 200:
r = requests.post(url, data=data, timeout=5)
try:
result = r.json()
time_cost = r.elapsed.total_seconds()
except:
HOST_NAME = socket.gethostname()
HOST_IP = socket.gethostbyname(HOST_NAME)
exc_type, exc_value, exc_traceback_obj = sys.exc_info() # sys.exc_info()，返回有关由except捕获的最近异常的信息
abnormal_info = ''.join(traceback.format_tb(exc_traceback_obj))
info = self.log_info.format(self.hospital_code, self.ver, HOST_IP, url, data, r.text, r.status_code,
exc_type.__name__, exc_value, abnormal_info, time.time()-start_time)
self.logger.error(info)
res['error_source'] = 'es'
res['input_data'] = input_info
res['request_add'] = url
res['response_status'] = r.status_code
res['response_text'] = r.text
res['error_type'] = exc_type.__name__
res['error_info'] = '.'.join(exc_value.args)
res['abnormal_info'] = ''.join(traceback.format_tb(exc_traceback_obj))
return res
res['res_flag'] = True
res['response_time'] = time_cost
res.update(result)
return res
def getId(self, expression):
start_time = time.time()
res = dict()
res['result'] = set()
res['res_flag'] = False
data = {
'expressions': expression,
"page": "0",
"size": "10",
"result": [[{"exp": "等于", "field": "住院病案首页_就诊信息_就诊次数", "flag": "1", "unit": "", "values": []}]]
}
r = requests.post(self.id_add, data=json.dumps(data))
if r.status_code == 200:
result = json.loads(r.text)
time_cost = r.elapsed.total_seconds()
else:
r = requests.post(self.id_add, data=json.dumps(data))
try:
result = json.loads(r.text)
time_cost = r.elapsed.total_seconds()
except:
HOST_NAME = socket.gethostname()
HOST_IP = socket.gethostbyname(HOST_NAME)
exc_type, exc_value, exc_traceback_obj = sys.exc_info()
abnormal_info = ''.join(traceback.format_tb(exc_traceback_obj))
info = self.log_info.format(self.hospital_code, self.ver, HOST_IP, self.id_add, data, r.text, r.status_code,
exc_type.__name__, exc_value, abnormal_info, time.time()-start_time)
self.logger.error(info)
res['error_source'] = 'es'
res['expression'] = expression
res['response_status'] = r.status_code
res['response_text'] = r.text
res['error_type'] = exc_type.__name__
res['error_info'] = '.'.join(exc_value.args)
res['abnormal_info'] = ''.join(traceback.format_tb(exc_traceback_obj))
return res
if 'result' in result:
res['res_flag'] = True
res['response_time'] = time_cost
if isinstance(result.get('result'), list):
for one_batch in result['result']:
keys = set(one_batch.keys())
res['result'].update(keys)
if 'Count' in result:
count = int(result['Count'])
if count != len(res['result']):
res['count'] = len(res['result'])
self.logger.warning('\nCount: {}\nlength: {}'.format(count, len(res), ))
else:
res['count'] = count
else:
res['error_info'] = 'No "result" in result...'
if not res['res_flag']:
res.update(result)
res['error_source'] = 'es'
res['expression'] = expression
HOST_NAME = socket.gethostname()
HOST_IP = socket.gethostbyname(HOST_NAME)
info = self.log_info.format(self.hospital_code, self.ver, HOST_IP, self.record_add, data, r.text, r.status_code,
'res_flag is False', res, 'getId', time.time()-start_time)
self.logger.warning(info)
return res
def getRecord(self, record_id, record_name, is_src=False):
start_time = time.time()
res = dict()
res['res_flag'] = False
data = {
'esId': record_id,
'wenshuName': record_name,
'isSrc': is_src
}
r = requests.post(self.record_add, data=data)
if r.status_code == 200:
result = json.loads(r.text)
time_cost = r.elapsed.total_seconds()
else:
r = requests.post(self.record_add, data=data)
try:
result = json.loads(r.text)
time_cost = r.elapsed.total_seconds()
except:
HOST_NAME = socket.gethostname()
HOST_IP = socket.gethostbyname(HOST_NAME)
exc_type, exc_value, exc_traceback_obj = sys.exc_info()
abnormal_info = ''.join(traceback.format_tb(exc_traceback_obj))
info = self.log_info.format(self.hospital_code, self.ver, HOST_IP, self.record_add, data, r.text, r.status_code,
exc_type.__name__, exc_value, abnormal_info, time.time()-start_time)
self.logger.error(info)
res['error_source'] = 'es'
res['record_id'] = record_id
res['record_name'] = record_name
res['response_status'] = r.status_code
res['response_text'] = r.text
res['error_type'] = exc_type.__name__
res['error_info'] = '.'.join(exc_value.args)
res['abnormal_info'] = ''.join(traceback.format_tb(exc_traceback_obj))
return res
if result.get(record_id):
res = json.loads(result.get(record_id))
res['res_flag'] = True
res['response_time'] = time_cost
if not res['res_flag']:
res.update(result)
res['error_source'] = 'es'
res['record_id'] = record_id
res['record_name'] = record_name
HOST_NAME = socket.gethostname()
HOST_IP = socket.gethostbyname(HOST_NAME)
info = self.log_info.format(self.hospital_code, self.ver, HOST_IP, self.record_add, data, r.text, r.status_code,
'res_flag is False', res, 'getRecord', time.time()-start_time)
self.logger.warning(info)
return res
def getRecordQuickly(self, patient_id, visit_id, record_name, record_type='2', is_src=False):
"""
快速获取文书，type: 1表示门诊，2表示住院
"""
record_id = '{}##{}#{}#{}'.format(self.hospital_code, record_type, patient_id, visit_id)
return self.getRecord(record_id, record_name, is_src)
def getEsIdByDate(self, start_date='', end_date=''):
"""
按患者出院起止时间, 获取患者es查询ID
"""
result = dict()
result['result'] = list()
expression = list()
if start_date and not end_date:
# 有起始日期，没有结束日期
expression = [[{"field": "住院病案首页_就诊信息_出院时间", "exp": ">=", "flag": "or", "unit": "", "values": [start_date]}]]
if end_date and not start_date:
# 有结束日期，没有起始日期
expression = [[{"field": "住院病案首页_就诊信息_出院时间", "exp": "<", "flag": "or", "unit": "", "values": [end_date]}]]
if start_date and end_date:
# 有起始日期，也有结束日期
expression = [[{"field": "住院病案首页_就诊信息_出院时间", "exp": ">=", "flag": "or", "unit": "", "values": [start_date]}],
[{"field": "住院病案首页_就诊信息_出院时间", "exp": "<", "flag": "or", "unit": "", "values": [end_date]}]]
if not expression:
return {'res_flag': False, 'info': 'No "start_date" or "end_date" in input para...'}
es_result = self.getId(expression)
if not es_result.get('res_flag'):
return es_result
result['res_flag'] = True
result['result'] = list(es_result['result'])
result['count'] = len(result['result'])
return result
def getPatientRecordList(self, patient_id, visit_id, record_type='2'):
start_time = time.time()
record_id = '{}##{}#{}#{}'.format(self.hospital_code, record_type, patient_id, visit_id)
data = {
'expressions': [[{"field": "fieldId", "exp": "=", "flag": "or", "unit": "", "values": [record_id]}]],
"page": "0",
"size": "10",
"resultField": ["文档列表_文档名"]
}
para = json.dumps(data)
result = self._requestMethod(url=self.record_list_add, data=para, start_time=start_time, input_info=para)
if not result.get('total'):
result['res_flag'] = False
return result
if isinstance(result.get('hits'), list) and len(result.get('hits')) > 0:
tmp = result['hits'][0]
if isinstance(tmp, list) and len(tmp) > 0:
res_tmp = tmp[0]
if isinstance(res_tmp, dict) and isinstance(res_tmp.get('文档列表_文档名'), str):
res_list = res_tmp.get('文档列表_文档名').split(',')
result['result'] = res_list
result.pop('hits')
return result
result['res_flag'] = False
return result
class GainSynonym(object):
is_init = False
def __init__(self):
if not GainSynonym.is_init:
self.parameters = Properties()
self.logger = LogUtils().getLogger('synonym')
self.log_info = """hospital_code: [{0}], version: [{1}], serverip: [{2}], request_add: [{3}], request_data: [{4}],
response_text: [{5}], response_code: [{6}], error_type: [{7}], error_content: [{8}], abnormal_info: [\n{9}], take_times: [{10:.2f}]s"""
self.hospital_code = self.parameters.properties.get('hospital_code')
self.ver = self.parameters.properties.get('version')
self.synonym_host = self.parameters.properties.get('synonym_host')
self.synonym_port = self.parameters.properties.get('synonym_port')
GainSynonym.is_init = True
def __new__(cls, *args, **kwargs):
"""
单例模式
"""
if not hasattr(cls, 'instance'):
cls.instance = super(GainSynonym, cls).__new__(cls)
return cls.instance
def get_same_word(self, word):
"""
获取同义词
"""
start_time = time.time()
res = dict()
if not (self.synonym_host and self.synonym_port):
res = {'res_flag': False, 'error_source': 'synonym', 'error_info': 'No synonym_host or synonym_port...'}
return res
data = {'word': word}
add = 'http://{}:{}/med/cdss/sameWord.json'.format(self.synonym_host, self.synonym_port)
r = requests.post(add, data=data)
if r.status_code == 200:
result = json.loads(r.text)
time_cost = r.elapsed.total_seconds()
res['res_flag'] = True
else:
r = requests.post(add, data=data)
try:
result = json.loads(r.text)
time_cost = r.elapsed.total_seconds()
res['res_flag'] = True
except:
HOST_NAME = socket.gethostname()
HOST_IP = socket.gethostbyname(HOST_NAME)
exc_type, exc_value, exc_traceback_obj = sys.exc_info()
abnormal_info = ''.join(traceback.format_tb(exc_traceback_obj))
info = self.log_info.format(self.hospital_code, self.ver, HOST_IP, add, data, r.text, r.status_code,
exc_type.__name__, exc_value, abnormal_info, time.time()-start_time)
self.logger.error(info)
res['res_flag'] = False
res['error_source'] = 'synonym'
res['response_status'] = r.status_code
res['response_text'] = r.text
res['error_type'] = exc_type.__name__
res['error_info'] = '.'.join(exc_value.args)
res['abnormal_info'] = ''.join(traceback.format_tb(exc_traceback_obj))
return res
if res.get('res_flag'):
res['response_time'] = time_cost
res['result'] = list(set(result))
return res
def get_child_disease(self, word):
"""
获取子疾病
"""
result = list()
if not (self.synonym_host and self.synonym_port):
self.logger.error('No synonym_host or synonym_port...')
return result
data = {'word': word}
add = 'http://{}:{}/med/cdss/getAllChildDisease.json'.format(self.synonym_host, self.synonym_port)
r = requests.post(add, data=data)
if r.status_code == 200:
result = json.loads(r.text)
else:
r = requests.post(add, data=data)
try:
result = json.loads(r.text)
except:
info = '\nvalue: {}\nstatus_code: {}'.format(data, r.status_code)
self.logger.error(info)
return result.get(word, list())
class HospitalServerInfo(object):
# 是否初始化
is_init = False
def __init__(self):
if not HospitalServerInfo.is_init:
self.inhospital_pat_data = dict()
self.inhospital_pat_num = dict()
self.discharge_pat_data = dict()
self.discharge_pat_num = dict()
self.ward_code_list = list()
self.mongo_pull_utils = PullDataFromMDBUtils()
self.logger = LogUtils().getLogger('backend')
self.parameters = Properties()
self.conf_dict = self.parameters.conf_dict.copy()
self.dept_dict = self.parameters.dept_dict.copy()
self.ward_dept = self.parameters.ward_dept.copy()
self.hospital_code = self.parameters.properties.get(
'hospital_code')
self.database_ip = self.parameters.properties.get('mongo_host')
if cur_path.endswith('Test'):
self.mr_client_url = self.conf_dict['mr_url'].get(
self.database_ip, dict()).get('test', '')
self.collection_name_doctor = self.mongo_pull_utils.mongodb_collection_name_doctor + '_test' # 医生端数据库
else:
self.mr_client_url = self.conf_dict['mr_url'].get(
self.database_ip, dict()).get('release', '')
self.collection_name_doctor = self.mongo_pull_utils.mongodb_collection_name_doctor
if not self.ward_code_list:
self.ward_code_list = self.get_ward_code()
HospitalServerInfo.is_init = True
def __new__(cls, *args, **kwargs):
"""
单例模式
"""
if not hasattr(cls, 'instance'):
cls.instance = super(HospitalServerInfo, cls).__new__(cls)
return cls.instance
def get_ward_code(self):
result = list()
for k, v in self.dept_dict.items():
if v in self.ward_dept:
result.append(k)
return result
def get_inhospitalpatdata(self):
"""
获取所有病区在院患者信息
"""
web_service = Client(self.mr_client_url)
for ward_code in self.ward_code_list:
mr_data = web_service.service.EmrInHospitalData(ward_code)
self.inhospital_pat_data[ward_code] = json.loads(mr_data)
return self.inhospital_pat_data
def get_dischargepatdata(self):
"""
获取所有病区出院患者信息，并更新doctor库的质控信息
"""
conn = self.mongo_pull_utils.connection(
collection_name=self.collection_name_doctor)
web_service = Client(self.mr_client_url)
for ward_code in self.ward_code_list:
mr_data = web_service.service.EmrOutHospitalData(ward_code)
self.discharge_pat_data[ward_code] = json.loads(mr_data)
patient_info = self.discharge_pat_data[ward_code].get(
'DISCHARGE_PATIENT_INFO', list())
for data in patient_info: # 通过电子病历服务器数据更新mongo中的医生端质控数据
key = data.get('PATIENT_ID', '') + '#' + data.get(
'VISIT_ID', '') + '#' + self.hospital_code
mongo_data = conn.find_one({'_id': key}, {'pat_info': 1})
if not mongo_data: # 没有质控数据则跳过
continue
if data.get('ADMISSION_DATE_TIME') and data.get(
'ADMISSION_DATE_TIME') != mongo_data.get(
'pat_info', dict()).get('admission_time'):
conn.update({'_id': key}, {
'$set': {
'pat_info.admission_time':
data.get('ADMISSION_DATE_TIME')
}
},
upsert=True) # 更新入院时间
if data.get('DISCHARGE_DATE_TIME') and data.get(
'DISCHARGE_DATE_TIME') != mongo_data.get(
'pat_info', dict()).get('discharge_time'):
conn.update({'_id': key}, {
'$set': {
'pat_info.discharge_time':
data.get('DISCHARGE_DATE_TIME')
}
},
upsert=True) # 更新出院时间
if data.get('DEPT_ADMISSION_TO_NAME') and data.get(
'DEPT_ADMISSION_TO_NAME') != mongo_data.get(
'pat_info',
dict()).get('district_admission_to_name'
): # dept 和 district 反了
ward = data.get('DEPT_ADMISSION_TO_NAME')
conn.update({'_id': key}, {
'$set': {
'pat_info.district_admission_to_name': ward
}
},
upsert=True) # 更新入院病区
conn.update({'_id': key}, {
'$set': {
'pat_info.dept_admission_to_name':
self.ward_dept.get(ward)
}
},
upsert=True) # 更新入院科室
if data.get('DEPT_DISCHARGE_FROM_NAME') and data.get(
'DEPT_DISCHARGE_FROM_NAME') != mongo_data.get(
'pat_info',
dict()).get('dept_discharge_from_name'):
ward = data.get('DEPT_DISCHARGE_FROM_NAME')
conn.update({'_id': key}, {
'$set': {
'pat_info.district_discharge_from_name': ward
}
},
upsert=True) # 更新出院病区
conn.update({'_id': key}, {
'$set': {
'pat_info.dept_discharge_from_name':
self.ward_dept.get(ward)
}
},
upsert=True) # 更新出院科室
return self.discharge_pat_data
def get_inhospitalpatnum(self):
"""
获取所有病区医生在院病人数
"""
web_service = Client(self.mr_client_url)
mr_data = web_service.service.EmrInHospitalPatNum()
self.inhospital_pat_num = json.loads(mr_data)
return self.inhospital_pat_num
def get_dischargepatnum(self):
"""
获取所有病区医生出院病人数
"""
web_service = Client(self.mr_client_url)
mr_data = web_service.service.EmrOutHospitalPatNum()
self.discharge_pat_num = json.loads(mr_data)
return self.discharge_pat_num
def get_artificial_data(self, patient_id='', visit_id=''):
"""
根据patient_id和visit_id获取该患者病历文书人工质控结果，并存入终末质控
"""
web_service = Client(self.mr_client_url)
mr_data = web_service.service.EmrArtificialQCData(patient_id, visit_id)
result = json.loads(mr_data)
if not result:
return result
try:
one_record = result.get('DISCHARGE_PATIENT_INFO', list())[0]
if not isinstance(one_record, dict):
return {}
except:
self.logger.error(traceback.format_exc())
return result
conn = self.mongo_pull_utils.connection()
key = patient_id + '#' + visit_id + '#' + self.hospital_code
if not conn.find_one({'_id': key}, {'_id': 1}): # 规则质控中无该文书质控信息
push_data = {'_id': key}
push_data['pat_info'] = dict()
push_data['pat_info']['patient_id'] = patient_id
push_data['pat_info']['visit_id'] = visit_id
push_data['pat_info']['machine_score'] = 0
push_data['pat_info']['person_name'] = one_record.get('姓名', '')
push_data['pat_info'][
'district_admission_to_name'] = one_record.get('入院病区', '')
push_data['pat_info'][
'district_discharge_from_name'] = one_record.get('出院病区', '')
push_data['pat_info'][
'dept_admission_to_name'] = self.ward_dept.get(
one_record.get('入院病区', ''), '')
push_data['pat_info'][
'dept_discharge_from_name'] = self.ward_dept.get(
one_record.get('出院病区', ''), '')
push_data['pat_info']['admission_time'] = one_record.get(
'入院时间', '')
push_data['pat_info']['discharge_time'] = one_record.get(
'出院时间', '')
push_data['pat_info']['html'] = list()
push_data['pat_value'] = list()
push_data['del_value'] = list()
push_data['content'] = list()
else:
push_data = conn.find_one({'_id': key})
if push_data.get('pat_info', dict(
)).get('district_admission_to_name') != one_record.get('入院病区', ''):
push_data['pat_info'][
'district_admission_to_name'] = one_record.get('入院病区', '')
push_data['pat_info'][
'dept_admission_to_name'] = self.ward_dept.get(
one_record.get('入院病区', ''), '')
if push_data.get('pat_info', dict()).get(
'district_discharge_from_name') != one_record.get(
'出院病区', ''):
push_data['pat_info'][
'district_discharge_from_name'] = one_record.get(
'出院病区', '')
push_data['pat_info'][
'dept_discharge_from_name'] = self.ward_dept.get(
one_record.get('出院病区', ''), '')
if push_data.get('pat_info',
dict()).get('admission_time') != one_record.get(
'入院时间', ''):
push_data['pat_info']['admission_time'] = one_record.get(
'入院时间', '')
if push_data.get('pat_info',
dict()).get('discharge_time') != one_record.get(
'出院时间', ''):
push_data['pat_info']['discharge_time'] = one_record.get(
'出院时间', '')
push_data['arti_control_date'] = one_record.get('质控日期', '') # 人工质控日期
push_data['record_quality_doctor'] = one_record.get('质控医生姓名', '')
push_data['status'] = True
push_data['artificial_value'] = result.get('DISCHARGE_PATIENT_INFO',
list())
save_status = conn.update({'_id': key}, {"$set": push_data},
upsert=True)
if save_status and isinstance(
save_status, dict) and 'updatedExisting' in save_status:
return result
else:
self.logger.error('update id {0} in {2} failed\n\t{1}'.format(
key, save_status,
self.mongo_pull_utils.mongodb_collection_name))
return {}
def get_auto_data(self, patient_id='', visit_id=''):
"""
根据patient_id和visit_id获取该患者病历文书自动质控结果，并存入终末质控
"""
web_service = Client(self.mr_client_url)
mr_data = web_service.service.EmrAutoQCData(patient_id, visit_id)
result = json.loads(mr_data)
if not result:
return result
try:
one_record = result.get('AUTO_QC_DATA', list())[0]
if not isinstance(one_record, dict):
return {}
except:
self.logger.error(traceback.format_exc())
return result
conn = self.mongo_pull_utils.connection()
key = patient_id + '#' + visit_id + '#' + self.hospital_code
if not conn.find_one({'_id': key}, {'_id': 1}): # 规则质控中无该文书质控信息
push_data = {'_id': key}
push_data['pat_info'] = dict()
push_data['pat_info']['patient_id'] = patient_id
push_data['pat_info']['visit_id'] = visit_id
push_data['pat_info']['machine_score'] = 0
push_data['pat_info']['person_name'] = one_record.get('NAME', '')
push_data['pat_info']['html'] = list()
push_data['pat_value'] = list()
push_data['del_value'] = list()
push_data['content'] = list()
else:
push_data = conn.find_one({'_id': key})
push_data['status'] = True
push_data['auto_value'] = result.get('AUTO_QC_DATA', list())
save_status = conn.update({'_id': key}, {"$set": push_data},
upsert=True)
if save_status and isinstance(
save_status, dict) and 'updatedExisting' in save_status:
return result
else:
self.logger.error('update id {0} in {2} failed\n\t{1}'.format(
key, save_status,
self.mongo_pull_utils.mongodb_collection_name))
return {}
def get_finalQC_id(self):
"""
定时请求增量数据表，获取增量数据id
"""
yesterday = datetime.now() - timedelta(days=1)
suffix = yesterday.strftime("%Y%m%d")
collection_name = 'hzlb_listlsb' + suffix
conn = self.mongo_pull_utils.connection(
collection_name=collection_name)
query_result = conn.find({}, {'_id': 1})
result = set()
for data in query_result:
if len(data.get('_id', '').split('#')) < 3:
continue
pivid = data.get('_id', '').split('#')[:2]
result.add((pivid[0], pivid[1]))
return result
def calc_doctor_stat(self):
"""
定时计算医生端上月统计数据
"""
conn = self.mongo_pull_utils.connection(
collection_name=self.collection_name_doctor) # 医生端数据库
class GainKnowledgeGraph(object):
IS_INIT = False
def __init__(self):
if not GainKnowledgeGraph.IS_INIT:
self.parameters = Properties()
self.logger = LogUtils().getLogger('es_search')
self.log_info = """hospital_code: [{0}], version: [{1}], serverip: [{2}], request_add: [{3}], request_data: [{4}],
response_text: [{5}], response_code: [{6}], error_type: [{7}], error_content: [{8}], abnormal_info: [\n{9}], take_times: [{10:.2f}]s"""
knowledge_host = self.parameters.properties.get('knowledge_host')
knowledge_port = self.parameters.properties.get('knowledge_port')
self.hospital_code = self.parameters.properties.get('hospital_code')
self.ver = self.parameters.properties.get('version')
self.standard_add = 'http://{}:{}/med/cdss/standardFromAliasList.json'.format(knowledge_host, knowledge_port)
self.relationship_add = 'http://{}:{}/med/cdss/isFatherOrSon.json'.format(knowledge_host, knowledge_port)
self.medicine_add = 'http://{}:{}/med/edit/searchKnowledge.json'.format(knowledge_host, knowledge_port)
GainKnowledgeGraph.IS_INIT = True
def __new__(cls, *args, **kwargs):
"""
单例模式
"""
if not hasattr(cls, 'instance'):
cls.instance = super(GainKnowledgeGraph, cls).__new__(cls)
return cls.instance
def _requestMethod(self, url, data, start_time, input_info):
res = {'res_flag': False}
r = requests.post(url, data=data, timeout=5)
if r.status_code != 200:
r = requests.post(url, data=data, timeout=5)
try:
result = r.json()
time_cost = r.elapsed.total_seconds()
except:
HOST_NAME = socket.gethostname()
HOST_IP = socket.gethostbyname(HOST_NAME)
exc_type, exc_value, exc_traceback_obj = sys.exc_info()
abnormal_info = ''.join(traceback.format_tb(exc_traceback_obj))
info = self.log_info.format(self.hospital_code, self.ver, HOST_IP, url, data, r.text, r.status_code,
exc_type.__name__, exc_value, abnormal_info, time.time()-start_time)
self.logger.error(info)
res['error_source'] = 'knowledge_graph'
res['input_data'] = input_info
res['request_add'] = url
res['response_status'] = r.status_code
res['response_text'] = r.text
res['error_type'] = exc_type.__name__
res['error_info'] = '.'.join(exc_value.args)
res['abnormal_info'] = ''.join(traceback.format_tb(exc_traceback_obj))
return res
res['res_flag'] = True
res['response_time'] = time_cost
res.update(result)
return res
def getStandardName(self, *args):
"""
获取标准名称
"""
start_time = time.time()
word_list = list(args)
data = {'word': json.dumps(word_list)}
result = self._requestMethod(url=self.standard_add, data=data, start_time=start_time, input_info=word_list)
return result
def getRelationship(self, word1, word2, word_type=''):
"""
两个词是否具有上下有关系
:param word1: 词1
:param word2: 词2
:param word_type: 词类型
:return: "result" 为true 或者 false
"""
start_time = time.time()
result = dict()
if not word_type:
type_list = ['disease', 'medicine', 'lab', 'lab_sub', 'exam', 'operation', 'symptom_sign']
else:
type_list = [word_type]
for i in type_list:
data = {'onto1': word1, 'onto2': word2, 'type': i}
result = self._requestMethod(url=self.relationship_add, data=data, start_time=start_time, input_info=data)
if result.get('res_flag'):
if result.get('result') is True:
return result
result['res_flag'] = False
return result
def getMedicineCategory(self, medicine_name):
"""
获取药品的分类
:param medicine_name:
:return:
"""
start_time = time.time()
data = {'wiki': {'$or': {'medicine_obj.name': medicine_name,
'medicine_obj.alias': medicine_name}},
'result': {'wiki': ['medicine_obj.category',
'medicine_obj.name']}}
data = json.dumps(data)
result = self._requestMethod(url=self.medicine_add, data=data, start_time=start_time, input_info=medicine_name)
if result.get('res_flag'):
if result.get('msg') == 'success':
result_list = list(result.get('result', dict()).get('hit', dict()).values())
res_list = list()
for i in result_list:
category_list = i.get('medicine_obj.category', list())
res_list.extend(category_list)
res = dict()
res['res_flag'] = True
res['response_time'] = result.get('response_time', '')
res['result'] = res_list
return res
result['res_flag'] = False
return result
def getTargetCategory(self, input_category, target_category, start_time=''):
"""
输入类别是否是目标类别的子类
:param input_category:
:param target_category:
:param start_time:
:return:
"""
if not start_time:
start_time = time.time()
for category in input_category:
res = dict()
res['res_flag'] = False
data = {'wiki': {'medicine_category_obj.name': category},
'result': {'wiki': ['medicine_category_obj.attribution',
'medicine_category_obj.name']}}
data = json.dumps(data)
result = self._requestMethod(url=self.medicine_add, data=data, start_time=start_time, input_info=category)
if result.get('res_flag'):
res_list = list()
if result.get('msg') == 'success':
result_list = list(result.get('result', dict()).get('hit', dict()).values())
for i in result_list:
category_list = i.get('medicine_category_obj.attribution', list())
res_list.extend(category_list)
if set(category_list) & set(target_category):
res['res_flag'] = True
res['response_time'] = result.get('response_time', '')
return res
if 'root' in res_list or not res_list:
return res
return self.getTargetCategory(res_list, target_category, start_time)
return {'res_flag': False}
def getSameContent(self, key_content, value_content):
"""
找出是否有同义词或具有上下级关系的词，但未找出所有相有关系的词
:param key_content: 单个词 或者 由词组成的可迭代对象
:param value_content: 单个词 或者 由词组成的可迭代对象
"""
if isinstance(key_content, str):
key_standard = self.getStandardName(key_content)
else:
key_content = set(key_content)
key_standard = self.getStandardName(*key_content)
if not key_standard.get('res_flag'):
return {}
if isinstance(value_content, str):
value_standard = self.getStandardName(value_content)
else:
value_content = set(value_content)
value_standard = self.getStandardName(*value_content)
if not value_standard.get('res_flag'):
return {}
key_dict = dict([(k, v) for k, v in key_standard.items() if isinstance(v, str)])
value_dict = dict([(k, v) for k, v in value_standard.items() if isinstance(v, str)])
if not (key_dict and value_dict):
return {}
key_set = set(key_dict.values())
value_set = set(value_dict.values())
same_word = key_set & value_set
synonym_dict = dict()
result = dict()
for i in same_word:
synonym_dict[i] = i
for key_k, key_v in key_dict.items():
if key_k in result:
continue
for value_k, value_v in value_dict.items():
if synonym_dict.get(key_v) == value_v:
result[key_k] = value_k
break
relation_res = self.getRelationship(key_v, value_v)
if relation_res.get('res_flag'):
result[key_k] = value_k
break
return result
def medicineIsTargetCategory(self, medicine, target_category):
"""
药品是否属于目标类别
"""
# 获取药物标准名
if isinstance(medicine, str):
medicine_standard = self.getStandardName(medicine)
else:
medicine = set(medicine)
medicine_standard = self.getStandardName(*medicine)
if not medicine_standard.get('res_flag'):
return {}
medicine_dict = dict([(k, v) for k, v in medicine_standard.items() if isinstance(v, str)])
if not medicine_dict:
return {}
medicine_set = set(medicine_dict.values())
input_category = set()
for i in medicine_set:
# 获取标准名药物的类别
category_result = self.getMedicineCategory(i)
if category_result.get('res_flag') is True:
input_category.update(category_result.get('result', list()))
return self.getTargetCategory(input_category, target_category)
