def __init__(self,record):
self.record = record
self.name = record[0].split()[1]
self.seq = record[1]
self.stt = record[2]
(self.s,self.n) = parseSecStr(self.stt)
(self.nussinov_s,self.nussinov_e) = nussinov(self.seq)
(self.nussinov_sp,self.nussinov_n) = parseSecStr(self.nussinov_s)
(self.runRNAFold_s,self.runRNAFold_e) = runRNAFold(self.seq)
(self.runRNAFold_sp,self.runRNAFold_n) = parseSecStr(self.runRNAFold_s)
def delta(seq) :
(struct_1,energy_1) = runRNAFold(seq)
(struct_2,energy_2) = nussinov(seq)
# print (struct_1,energy_1), (struct_2,energy_2)
return energy_2 - energy_1