def getDamParOutputFromDNATables(self, _xsDataDnaTables):
xsDataResultBest = XSDataResultBest()
xsTablesCollectionStrategy = EDUtilsTable.getTableListFromTables(_xsDataDnaTables, "dam_par_plan")
iCollectionPlanNumber = 1
for xsTableCollectionStrategy in xsTablesCollectionStrategy:
xsDataBestCollectionPlan = XSDataBestCollectionPlan()
xsDataStrategySummary = XSDataBestStrategySummary()
xsGeneralList = EDUtilsTable.getListsFromTable(xsTableCollectionStrategy, "general")[0]
xsCollectionRunList = EDUtilsTable.getListsFromTable(xsTableCollectionStrategy, "collection_run")
iCollectionRunNumber = 1
for xsCollectionRunItemList in xsCollectionRunList:
xsDataCollectionRun = self.collectionRunItemListToCollectionRun(xsCollectionRunItemList, iCollectionRunNumber)
xsDataBestCollectionPlan.addCollectionRun(xsDataCollectionRun)
iCollectionRunNumber = iCollectionRunNumber + 1
xsDataBestCollectionPlan.setCollectionPlanNumber(XSDataInteger(iCollectionPlanNumber))
xsDataResultBest.addCollectionPlan(xsDataBestCollectionPlan)
iCollectionPlanNumber = iCollectionPlanNumber + 1
xsItemDistance = EDUtilsTable.getItemFromList(xsGeneralList, "distance")
fDistance = float(xsItemDistance.getValueOf_())
xsDataStrategySummary.setDistance(XSDataLength(fDistance))
xsItemResolution = EDUtilsTable.getItemFromList(xsGeneralList, "resolution")
fResolution = float(xsItemResolution.getValueOf_())
xsDataStrategySummary.setResolution(XSDataDouble(fResolution))
xsDataBestCollectionPlan.setStrategySummary(xsDataStrategySummary)
return xsDataResultBest
def getBonlyOutputFromDNATables(self, _xsDataDnaTables):
xsDataResultBest = XSDataResultBest()
xsTablesGeneralInform = EDUtilsTable.getTableListFromTables(_xsDataDnaTables, "general_inform")
xsDataBestCollectionPlan = XSDataBestCollectionPlan()
xsDataCrystalScale = XSDataCrystalScale()
xsCrystalScaleList = EDUtilsTable.getListsFromTable(xsTablesGeneralInform[0], "crystal_scale")[0]
xsItemScal = EDUtilsTable.getItemFromList(xsCrystalScaleList, "scal")
fScal = float(xsItemScal.getValueOf_())
xsDataCrystalScale.setScale(XSDataDouble(fScal))
xsItemBfactor = EDUtilsTable.getItemFromList(xsCrystalScaleList, "B_factor")
fBfactor = float(xsItemBfactor.getValueOf_())
xsDataCrystalScale.setBFactor(XSDataDouble(fBfactor))
xsDataBestCollectionPlan.setCrystalScale(xsDataCrystalScale)
xsDataResultBest.addCollectionPlan(xsDataBestCollectionPlan)
return xsDataResultBest
def getBonlyOutputFromDNATables(self, _xsDataDnaTables):
xsDataResultBest = XSDataResultBest()
xsTablesGeneralInform = EDUtilsTable.getTableListFromTables(
_xsDataDnaTables, "general_inform")
xsDataBestCollectionPlan = XSDataBestCollectionPlan()
xsDataCrystalScale = XSDataCrystalScale()
xsCrystalScaleList = EDUtilsTable.getListsFromTable(
xsTablesGeneralInform[0], "crystal_scale")[0]
xsItemScal = EDUtilsTable.getItemFromList(xsCrystalScaleList, "scal")
fScal = float(xsItemScal.getValueOf_())
xsDataCrystalScale.setScale(XSDataDouble(fScal))
xsItemBfactor = EDUtilsTable.getItemFromList(xsCrystalScaleList,
"B_factor")
fBfactor = float(xsItemBfactor.getValueOf_())
xsDataCrystalScale.setBFactor(XSDataDouble(fBfactor))
xsDataBestCollectionPlan.setCrystalScale(xsDataCrystalScale)
xsDataResultBest.addCollectionPlan(xsDataBestCollectionPlan)
return xsDataResultBest
def getDamParOutputFromDNATables(self, _xsDataDnaTables):
xsDataResultBest = XSDataResultBest()
xsTablesCollectionStrategy = EDUtilsTable.getTableListFromTables(
_xsDataDnaTables, "dam_par_plan")
iCollectionPlanNumber = 1
for xsTableCollectionStrategy in xsTablesCollectionStrategy:
xsDataBestCollectionPlan = XSDataBestCollectionPlan()
xsDataStrategySummary = XSDataBestStrategySummary()
xsGeneralList = EDUtilsTable.getListsFromTable(
xsTableCollectionStrategy, "general")[0]
xsCollectionRunList = EDUtilsTable.getListsFromTable(
xsTableCollectionStrategy, "collection_run")
iCollectionRunNumber = 1
for xsCollectionRunItemList in xsCollectionRunList:
xsDataCollectionRun = self.collectionRunItemListToCollectionRun(
xsCollectionRunItemList, iCollectionRunNumber)
xsDataBestCollectionPlan.addCollectionRun(xsDataCollectionRun)
iCollectionRunNumber = iCollectionRunNumber + 1
xsDataBestCollectionPlan.setCollectionPlanNumber(
XSDataInteger(iCollectionPlanNumber))
xsDataResultBest.addCollectionPlan(xsDataBestCollectionPlan)
iCollectionPlanNumber = iCollectionPlanNumber + 1
xsItemDistance = EDUtilsTable.getItemFromList(
xsGeneralList, "distance")
fDistance = float(xsItemDistance.getValueOf_())
xsDataStrategySummary.setDistance(XSDataLength(fDistance))
xsItemResolution = EDUtilsTable.getItemFromList(
xsGeneralList, "resolution")
fResolution = float(xsItemResolution.getValueOf_())
xsDataStrategySummary.setResolution(XSDataDouble(fResolution))
xsDataBestCollectionPlan.setStrategySummary(xsDataStrategySummary)
return xsDataResultBest
def getDataCollectionOutputDataFromDNATables(self, _xsDataDnaTables):
xsDataResultBest = XSDataResultBest()
# SubWedges
xsTablesCollectionStrategy = EDUtilsTable.getTableListFromTables(_xsDataDnaTables, "data_collection_strategy")
iCollectionPlanNumber = 1
for xsTableCollectionStrategy in xsTablesCollectionStrategy:
xsDataBestCollectionPlan = XSDataBestCollectionPlan()
xsCollectionRunList = EDUtilsTable.getListsFromTable(xsTableCollectionStrategy, "collection_run")
iCollectionRunNumber = 1
for xsCollectionRunItemList in xsCollectionRunList:
xsDataCollectionRun = self.collectionRunItemListToCollectionRun(xsCollectionRunItemList, iCollectionRunNumber)
xsDataBestCollectionPlan.addCollectionRun(xsDataCollectionRun)
iCollectionRunNumber = iCollectionRunNumber + 1
# Strategy Summary
xsStrategySummaryItemList = EDUtilsTable.getListsFromTable(xsTableCollectionStrategy, "summary")
xsDataStrategySummary = self.strategySummaryItemListToStrategySummary(xsStrategySummaryItemList[0])
# Ranking Resolution
# Not part of strategySummaryItemListToStrategySummary method since it is in the general_form part
xsTableGeneralInform = EDUtilsTable.getTableFromTables(_xsDataDnaTables, "general_inform")
xsRankingResolutionItemList = EDUtilsTable.getListsFromTable(xsTableGeneralInform, "ranking_resolution")
xsItemRankingResolution = EDUtilsTable.getItemFromList(xsRankingResolutionItemList[0], "dmin")
fRankingResolution = float(xsItemRankingResolution.getValueOf_())
xsDataStrategySummary.setRankingResolution(XSDataDouble(fRankingResolution))
xsDataBestCollectionPlan.setStrategySummary(xsDataStrategySummary)
# Satistics
xsTablesStatisticalPrediction = EDUtilsTable.getTableListFromTables(_xsDataDnaTables, "statistical_prediction")
for xsTableStatisticalPrediction in xsTablesStatisticalPrediction:
if(xsTableStatisticalPrediction.getIndex() == xsTableCollectionStrategy.getIndex()):
xsResolutionBinList = EDUtilsTable.getListsFromTable(xsTableStatisticalPrediction, "resolution_bin")
xsDataStatisticalPrediction = XSDataBestStatisticalPrediction()
for xsResolutionBinItemList in xsResolutionBinList:
xsDataResolutionBin = self.resolutionBinItemListToResolutionBin(xsResolutionBinItemList)
xsDataStatisticalPrediction.addResolutionBin(xsDataResolutionBin)
xsDataBestCollectionPlan.setStatisticalPrediction(xsDataStatisticalPrediction)
xsDataBestCollectionPlan.setCollectionPlanNumber(XSDataInteger(iCollectionPlanNumber))
xsDataResultBest.addCollectionPlan(xsDataBestCollectionPlan)
iCollectionPlanNumber = iCollectionPlanNumber + 1
# Fix the order of the collection plans - then low resolution pass should be the first one
listCollectionPlan = xsDataResultBest.getCollectionPlan()
if (len(listCollectionPlan) > 1):
bIsModified = False
for xsDataCollectionPlan in listCollectionPlan:
xsDataStrategySummary = xsDataCollectionPlan.getStrategySummary()
strReasoning = xsDataStrategySummary.getResolutionReasoning().getValue()
if ((strReasoning.find("Low-resolution") != -1) and xsDataCollectionPlan.getCollectionPlanNumber().getValue() != 1):
listCollectionPlan.remove(xsDataCollectionPlan)
listCollectionPlan.insert(0, xsDataCollectionPlan)
bIsModified = True
if (bIsModified):
iCollectionPlanNumber = 1
for xsDataCollectionPlan in listCollectionPlan:
xsDataCollectionPlan.setCollectionPlanNumber(XSDataInteger(iCollectionPlanNumber))
iCollectionPlanNumber = iCollectionPlanNumber + 1
return xsDataResultBest
def getDataCollectionOutputDataFromDNATables(self, _xsDataDnaTables):
xsDataResultBest = XSDataResultBest()
# SubWedges
xsTablesCollectionStrategy = EDUtilsTable.getTableListFromTables(
_xsDataDnaTables, "data_collection_strategy")
iCollectionPlanNumber = 1
for xsTableCollectionStrategy in xsTablesCollectionStrategy:
xsDataBestCollectionPlan = XSDataBestCollectionPlan()
xsCollectionRunList = EDUtilsTable.getListsFromTable(
xsTableCollectionStrategy, "collection_run")
iCollectionRunNumber = 1
for xsCollectionRunItemList in xsCollectionRunList:
xsDataCollectionRun = self.collectionRunItemListToCollectionRun(
xsCollectionRunItemList, iCollectionRunNumber)
xsDataBestCollectionPlan.addCollectionRun(xsDataCollectionRun)
iCollectionRunNumber = iCollectionRunNumber + 1
# Strategy Summary
xsStrategySummaryItemList = EDUtilsTable.getListsFromTable(
xsTableCollectionStrategy, "summary")
xsDataStrategySummary = self.strategySummaryItemListToStrategySummary(
xsStrategySummaryItemList[0])
# Ranking Resolution
# Not part of strategySummaryItemListToStrategySummary method since it is in the general_form part
xsTableGeneralInform = EDUtilsTable.getTableFromTables(
_xsDataDnaTables, "general_inform")
xsRankingResolutionItemList = EDUtilsTable.getListsFromTable(
xsTableGeneralInform, "ranking_resolution")
xsItemRankingResolution = EDUtilsTable.getItemFromList(
xsRankingResolutionItemList[0], "dmin")
fRankingResolution = float(xsItemRankingResolution.getValueOf_())
xsDataStrategySummary.setRankingResolution(
XSDataDouble(fRankingResolution))
xsDataBestCollectionPlan.setStrategySummary(xsDataStrategySummary)
# Satistics
xsTablesStatisticalPrediction = EDUtilsTable.getTableListFromTables(
_xsDataDnaTables, "statistical_prediction")
for xsTableStatisticalPrediction in xsTablesStatisticalPrediction:
if (xsTableStatisticalPrediction.getIndex() ==
xsTableCollectionStrategy.getIndex()):
xsResolutionBinList = EDUtilsTable.getListsFromTable(
xsTableStatisticalPrediction, "resolution_bin")
xsDataStatisticalPrediction = XSDataBestStatisticalPrediction(
)
for xsResolutionBinItemList in xsResolutionBinList:
xsDataResolutionBin = self.resolutionBinItemListToResolutionBin(
xsResolutionBinItemList)
xsDataStatisticalPrediction.addResolutionBin(
xsDataResolutionBin)
xsDataBestCollectionPlan.setStatisticalPrediction(
xsDataStatisticalPrediction)
xsDataBestCollectionPlan.setCollectionPlanNumber(
XSDataInteger(iCollectionPlanNumber))
xsDataResultBest.addCollectionPlan(xsDataBestCollectionPlan)
iCollectionPlanNumber = iCollectionPlanNumber + 1
# Fix the order of the collection plans - then low resolution pass should be the first one
listCollectionPlan = xsDataResultBest.getCollectionPlan()
if (len(listCollectionPlan) > 1):
bIsModified = False
for xsDataCollectionPlan in listCollectionPlan:
xsDataStrategySummary = xsDataCollectionPlan.getStrategySummary(
)
strReasoning = xsDataStrategySummary.getResolutionReasoning(
).getValue()
if ((strReasoning.find("Low-resolution") != -1)
and xsDataCollectionPlan.getCollectionPlanNumber(
).getValue() != 1):
listCollectionPlan.remove(xsDataCollectionPlan)
listCollectionPlan.insert(0, xsDataCollectionPlan)
bIsModified = True
if (bIsModified):
iCollectionPlanNumber = 1
for xsDataCollectionPlan in listCollectionPlan:
xsDataCollectionPlan.setCollectionPlanNumber(
XSDataInteger(iCollectionPlanNumber))
iCollectionPlanNumber = iCollectionPlanNumber + 1
return xsDataResultBest
