def getDamParOutputFromDNATables(self, _xsDataDnaTables):
xsDataResultBest = XSDataResultBest()
xsTablesCollectionStrategy = EDUtilsTable.getTableListFromTables(_xsDataDnaTables, "dam_par_plan")
iCollectionPlanNumber = 1
for xsTableCollectionStrategy in xsTablesCollectionStrategy:
xsDataBestCollectionPlan = XSDataBestCollectionPlan()
xsDataStrategySummary = XSDataBestStrategySummary()
xsGeneralList = EDUtilsTable.getListsFromTable(xsTableCollectionStrategy, "general")[0]
xsCollectionRunList = EDUtilsTable.getListsFromTable(xsTableCollectionStrategy, "collection_run")
iCollectionRunNumber = 1
for xsCollectionRunItemList in xsCollectionRunList:
xsDataCollectionRun = self.collectionRunItemListToCollectionRun(xsCollectionRunItemList, iCollectionRunNumber)
xsDataBestCollectionPlan.addCollectionRun(xsDataCollectionRun)
iCollectionRunNumber = iCollectionRunNumber + 1
xsDataBestCollectionPlan.setCollectionPlanNumber(XSDataInteger(iCollectionPlanNumber))
xsDataResultBest.addCollectionPlan(xsDataBestCollectionPlan)
iCollectionPlanNumber = iCollectionPlanNumber + 1
xsItemDistance = EDUtilsTable.getItemFromList(xsGeneralList, "distance")
fDistance = float(xsItemDistance.getValueOf_())
xsDataStrategySummary.setDistance(XSDataLength(fDistance))
xsItemResolution = EDUtilsTable.getItemFromList(xsGeneralList, "resolution")
fResolution = float(xsItemResolution.getValueOf_())
xsDataStrategySummary.setResolution(XSDataDouble(fResolution))
xsDataBestCollectionPlan.setStrategySummary(xsDataStrategySummary)
return xsDataResultBest
def getDamParOutputFromDNATables(self, _xsDataDnaTables):
xsDataResultBest = XSDataResultBest()
xsTablesCollectionStrategy = EDUtilsTable.getTableListFromTables(
_xsDataDnaTables, "dam_par_plan")
iCollectionPlanNumber = 1
for xsTableCollectionStrategy in xsTablesCollectionStrategy:
xsDataBestCollectionPlan = XSDataBestCollectionPlan()
xsDataStrategySummary = XSDataBestStrategySummary()
xsGeneralList = EDUtilsTable.getListsFromTable(
xsTableCollectionStrategy, "general")[0]
xsCollectionRunList = EDUtilsTable.getListsFromTable(
xsTableCollectionStrategy, "collection_run")
iCollectionRunNumber = 1
for xsCollectionRunItemList in xsCollectionRunList:
xsDataCollectionRun = self.collectionRunItemListToCollectionRun(
xsCollectionRunItemList, iCollectionRunNumber)
xsDataBestCollectionPlan.addCollectionRun(xsDataCollectionRun)
iCollectionRunNumber = iCollectionRunNumber + 1
xsDataBestCollectionPlan.setCollectionPlanNumber(
XSDataInteger(iCollectionPlanNumber))
xsDataResultBest.addCollectionPlan(xsDataBestCollectionPlan)
iCollectionPlanNumber = iCollectionPlanNumber + 1
xsItemDistance = EDUtilsTable.getItemFromList(
xsGeneralList, "distance")
fDistance = float(xsItemDistance.getValueOf_())
xsDataStrategySummary.setDistance(XSDataLength(fDistance))
xsItemResolution = EDUtilsTable.getItemFromList(
xsGeneralList, "resolution")
fResolution = float(xsItemResolution.getValueOf_())
xsDataStrategySummary.setResolution(XSDataDouble(fResolution))
xsDataBestCollectionPlan.setStrategySummary(xsDataStrategySummary)
return xsDataResultBest
def strategySummaryItemListToStrategySummary(self, _xsStrategySummaryItemList):
xsDataStrategySummary = XSDataBestStrategySummary()
xsItemDistance = EDUtilsTable.getItemFromList(_xsStrategySummaryItemList, "distance")
fDistance = float(xsItemDistance.getValueOf_())
xsDataStrategySummary.setDistance(XSDataLength(fDistance))
strItemTransmission = EDUtilsTable.getItemFromList(_xsStrategySummaryItemList, "transmission")
fTransmission = float(strItemTransmission.getValueOf_())
xsDataStrategySummary.setTransmission(XSDataDouble(fTransmission))
strItemCompleteness = EDUtilsTable.getItemFromList(_xsStrategySummaryItemList, "completeness")
# For homegeneity concerns, EDNA data model should store all the completeness value in fraction
# ( DNA table xml file stores the summary strategy completeness in percentage whereas
# the resolution bin completeness are in fraction )
fCompleteness = float(strItemCompleteness.getValueOf_()) / 100
xsDataStrategySummary.setCompleteness(XSDataDouble(fCompleteness))
strItemISigma = EDUtilsTable.getItemFromList(_xsStrategySummaryItemList, "i_sigma")
fISigma = float(strItemISigma.getValueOf_())
xsDataStrategySummary.setISigma(XSDataDouble(fISigma))
strItemRedundancy = EDUtilsTable.getItemFromList(_xsStrategySummaryItemList, "redundancy")
fRedundancy = float(strItemRedundancy.getValueOf_())
xsDataStrategySummary.setRedundancy(XSDataDouble(fRedundancy))
strItemResolution = EDUtilsTable.getItemFromList(_xsStrategySummaryItemList, "resolution")
fResolution = float(strItemResolution.getValueOf_())
xsDataStrategySummary.setResolution(XSDataDouble(fResolution))
strItemResolutionReasoning = EDUtilsTable.getItemFromList(_xsStrategySummaryItemList, "resolution_reasoning")
strResolutionReasoning = strItemResolutionReasoning.getValueOf_()
xsDataStrategySummary.setResolutionReasoning(XSDataString(strResolutionReasoning))
strItemTotalDataCollectionTime = EDUtilsTable.getItemFromList(_xsStrategySummaryItemList, "total_data_collection_time")
fTotalDataCollectionTime = float(strItemTotalDataCollectionTime.getValueOf_())
xsDataStrategySummary.setTotalDataCollectionTime(XSDataTime(fTotalDataCollectionTime))
strItemTotalExposureTime = EDUtilsTable.getItemFromList(_xsStrategySummaryItemList, "total_exposure_time")
fTotalExposureTime = float(strItemTotalExposureTime.getValueOf_())
xsDataStrategySummary.setTotalExposureTime(XSDataTime(fTotalExposureTime))
return xsDataStrategySummary
def strategySummaryItemListToStrategySummary(self,
_xsStrategySummaryItemList):
xsDataStrategySummary = XSDataBestStrategySummary()
xsItemDistance = EDUtilsTable.getItemFromList(
_xsStrategySummaryItemList, "distance")
fDistance = float(xsItemDistance.getValueOf_())
xsDataStrategySummary.setDistance(XSDataLength(fDistance))
strItemTransmission = EDUtilsTable.getItemFromList(
_xsStrategySummaryItemList, "transmission")
fTransmission = float(strItemTransmission.getValueOf_())
xsDataStrategySummary.setTransmission(XSDataDouble(fTransmission))
strItemCompleteness = EDUtilsTable.getItemFromList(
_xsStrategySummaryItemList, "completeness")
# For homegeneity concerns, EDNA data model should store all the completeness value in fraction
# ( DNA table xml file stores the summary strategy completeness in percentage whereas
# the resolution bin completeness are in fraction )
fCompleteness = float(strItemCompleteness.getValueOf_()) / 100
xsDataStrategySummary.setCompleteness(XSDataDouble(fCompleteness))
strItemISigma = EDUtilsTable.getItemFromList(
_xsStrategySummaryItemList, "i_sigma")
fISigma = float(strItemISigma.getValueOf_())
xsDataStrategySummary.setISigma(XSDataDouble(fISigma))
strItemRedundancy = EDUtilsTable.getItemFromList(
_xsStrategySummaryItemList, "redundancy")
fRedundancy = float(strItemRedundancy.getValueOf_())
xsDataStrategySummary.setRedundancy(XSDataDouble(fRedundancy))
strItemResolution = EDUtilsTable.getItemFromList(
_xsStrategySummaryItemList, "resolution")
fResolution = float(strItemResolution.getValueOf_())
xsDataStrategySummary.setResolution(XSDataDouble(fResolution))
strItemResolutionReasoning = EDUtilsTable.getItemFromList(
_xsStrategySummaryItemList, "resolution_reasoning")
strResolutionReasoning = strItemResolutionReasoning.getValueOf_()
xsDataStrategySummary.setResolutionReasoning(
XSDataString(strResolutionReasoning))
strItemTotalDataCollectionTime = EDUtilsTable.getItemFromList(
_xsStrategySummaryItemList, "total_data_collection_time")
fTotalDataCollectionTime = float(
strItemTotalDataCollectionTime.getValueOf_())
xsDataStrategySummary.setTotalDataCollectionTime(
XSDataTime(fTotalDataCollectionTime))
strItemTotalExposureTime = EDUtilsTable.getItemFromList(
_xsStrategySummaryItemList, "total_exposure_time")
fTotalExposureTime = float(strItemTotalExposureTime.getValueOf_())
xsDataStrategySummary.setTotalExposureTime(
XSDataTime(fTotalExposureTime))
return xsDataStrategySummary