def testGenerateExecutiveSummary(self):
pluginIntegration = self.createPlugin()
pluginIntegration.setScriptExecutable("cat")
pluginIntegration.configure()
from XSDataMOSFLMv10 import XSDataMOSFLMInputIntegration
strMOSFLMInputIntegrationXML = self.readAndParseFile(self.strReferenceDataInputFile)
strMOSFLMOutputIntegrationXML = self.readAndParseFile(self.strReferenceDataOutputFile)
xsDataMOSFLMInputIntegration = XSDataMOSFLMInputIntegration.parseString(strMOSFLMInputIntegrationXML)
xsDataMOSFLMOutputIntegration = XSDataMOSFLMOutputIntegration.parseString(strMOSFLMOutputIntegrationXML)
pluginIntegration.setDataInput(xsDataMOSFLMInputIntegration)
pluginIntegration.setDataOutput(xsDataMOSFLMOutputIntegration)
pluginIntegration.generateExecutiveSummary(pluginIntegration)
pluginIntegration.verboseScreenExecutiveSummary()
self.cleanUp(pluginIntegration)
def testGenerateXSDataMOSFLMInputIntegration(self):
strFilename = "XSDataIntegrationInput_reference.xml"
strPath = os.path.join(self.m_strDataPath, strFilename)
strXMLIntegrationInput = EDUtilsTest.readAndParseFile(strPath)
from XSDataMXv1 import XSDataIntegrationInput
xsDataIntegrationInput = XSDataIntegrationInput.parseString(strXMLIntegrationInput)
from EDHandlerXSDataMOSFLMv10 import EDHandlerXSDataMOSFLMv10
xsDataMOSFLMInputIntegration = EDHandlerXSDataMOSFLMv10.generateXSDataMOSFLMInputIntegration(xsDataIntegrationInput)
strReferenceFilename = "XSDataMOSFLMInputIntegration_reference.xml"
strReferencePath = os.path.join(self.m_strDataPath, strReferenceFilename)
strXMLIntegrationInputReference = EDUtilsTest.readAndParseFile(strReferencePath)
EDFactoryPluginStatic.loadModule("XSDataMOSFLMv10")
from XSDataMOSFLMv10 import XSDataMOSFLMInputIntegration
xsDataMOSFLMInputIntegrationReference = XSDataMOSFLMInputIntegration.parseString(strXMLIntegrationInputReference)
EDAssert.equal(xsDataMOSFLMInputIntegrationReference.marshal(), xsDataMOSFLMInputIntegration.marshal())
def testGenerateExecutiveSummary(self):
pluginIntegration = self.createPlugin()
pluginIntegration.setScriptExecutable("cat")
pluginIntegration.configure()
from XSDataMOSFLMv10 import XSDataMOSFLMInputIntegration
strMOSFLMInputIntegrationXML = self.readAndParseFile(
self.strReferenceDataInputFile)
strMOSFLMOutputIntegrationXML = self.readAndParseFile(
self.strReferenceDataOutputFile)
xsDataMOSFLMInputIntegration = XSDataMOSFLMInputIntegration.parseString(
strMOSFLMInputIntegrationXML)
xsDataMOSFLMOutputIntegration = XSDataMOSFLMOutputIntegration.parseString(
strMOSFLMOutputIntegrationXML)
pluginIntegration.setDataInput(xsDataMOSFLMInputIntegration)
pluginIntegration.setDataOutput(xsDataMOSFLMOutputIntegration)
pluginIntegration.generateExecutiveSummary(pluginIntegration)
pluginIntegration.verboseScreenExecutiveSummary()
self.cleanUp(pluginIntegration)
def testGenerateXSDataMOSFLMInputIntegration(self):
strFilename = "XSDataIntegrationInput_reference.xml"
strPath = os.path.join(self.m_strDataPath, strFilename)
strXMLIntegrationInput = EDUtilsTest.readAndParseFile(strPath)
from XSDataMXv1 import XSDataIntegrationInput
xsDataIntegrationInput = XSDataIntegrationInput.parseString(
strXMLIntegrationInput)
from EDHandlerXSDataMOSFLMv10 import EDHandlerXSDataMOSFLMv10
xsDataMOSFLMInputIntegration = EDHandlerXSDataMOSFLMv10.generateXSDataMOSFLMInputIntegration(
xsDataIntegrationInput)
strReferenceFilename = "XSDataMOSFLMInputIntegration_reference.xml"
strReferencePath = os.path.join(self.m_strDataPath,
strReferenceFilename)
strXMLIntegrationInputReference = EDUtilsTest.readAndParseFile(
strReferencePath)
EDFactoryPluginStatic.loadModule("XSDataMOSFLMv10")
from XSDataMOSFLMv10 import XSDataMOSFLMInputIntegration
xsDataMOSFLMInputIntegrationReference = XSDataMOSFLMInputIntegration.parseString(
strXMLIntegrationInputReference)
EDAssert.equal(xsDataMOSFLMInputIntegrationReference.marshal(),
xsDataMOSFLMInputIntegration.marshal())
def generateXSDataMOSFLMInputIntegration(_xsDataIntegrationInput):
"""
Translation from XSDataIntegrationInput to XSDataMOSFLMInputIntegration.
"""
EDVerbose.DEBUG(
"EDHandlerXSDataMOSFLMv10.generateXSDataMOSFLMInputIntegration")
EDFactoryPluginStatic.loadModule("XSDataMOSFLMv10")
from XSDataMOSFLMv10 import XSDataMOSFLMBeamPosition
from XSDataMOSFLMv10 import XSDataMOSFLMInputIntegration
from XSDataMOSFLMv10 import XSDataMOSFLMNewmat
from XSDataMOSFLMv10 import XSDataMOSFLMMissettingsAngles
xsDataCrystalRefined = _xsDataIntegrationInput.getCrystalRefined()
xsDataIndexingSolutionSelected = _xsDataIntegrationInput.getSelectedIndexingSolution(
)
if (xsDataCrystalRefined is None):
xsDataCrystalRefined = xsDataIndexingSolutionSelected.getCrystal()
xsDataCollection = _xsDataIntegrationInput.getDataCollection()
xsDataSubWedge = xsDataCollection.getSubWedge()[0]
xsDataImageList = xsDataSubWedge.getImage()
xsDataImageFirst = xsDataImageList[0]
xsDataGoniostat = xsDataSubWedge.getExperimentalCondition(
).getGoniostat()
xsDataCrystal = xsDataIndexingSolutionSelected.getCrystal()
xsDataOrientation = xsDataIndexingSolutionSelected.getOrientation()
xsDataExperimentalCondition = xsDataIndexingSolutionSelected.getExperimentalConditionRefined(
)
xsDataDetector = xsDataExperimentalCondition.getDetector()
xsDataBeam = xsDataExperimentalCondition.getBeam()
xsDataMatrixA = xsDataOrientation.getMatrixA()
xsDataMatrixU = xsDataOrientation.getMatrixU()
xsDataCell = xsDataCrystal.getCell()
xsDataMOSFLMInputIntegration = XSDataMOSFLMInputIntegration()
xsDataMOSFLMNewmat = XSDataMOSFLMNewmat()
xsDataMOSFLMNewmat.setRefinedCell(xsDataCell)
xsDataMOSFLMNewmat.setAMatrix(xsDataMatrixA)
xsDataMOSFLMNewmat.setUMatrix(xsDataMatrixU)
xsDataMOSFLMInputIntegration.setMatrix(xsDataMOSFLMNewmat)
xsDataMOSFLMMissettingsAngles = XSDataMOSFLMMissettingsAngles()
xsDataMOSFLMMissettingsAngles.setPhix(XSDataAngle(0.0))
xsDataMOSFLMMissettingsAngles.setPhiy(XSDataAngle(0.0))
xsDataMOSFLMMissettingsAngles.setPhiz(XSDataAngle(0.0))
xsDataMOSFLMNewmat.setMissettingAngles(xsDataMOSFLMMissettingsAngles)
xsDataMOSFLMBeamPosition = XSDataMOSFLMBeamPosition()
xsDataMOSFLMBeamPosition.setX(xsDataDetector.getBeamPositionX())
xsDataMOSFLMBeamPosition.setY(xsDataDetector.getBeamPositionY())
xsDataMOSFLMInputIntegration.setBeam(xsDataMOSFLMBeamPosition)
xsDataMOSFLMInputIntegration.setMosaicity(xsDataCrystal.getMosaicity())
xsDataMOSFLMInputIntegration.setSymmetry(
xsDataCrystal.getSpaceGroup().getName())
strPathFirst = xsDataImageFirst.getPath().getValue()
strDirectoryFirst = os.path.dirname(strPathFirst)
strFilenameFirst = os.path.basename(strPathFirst)
fOscillationRange = xsDataGoniostat.getOscillationWidth().getValue()
xsDataMOSFLMInputIntegration.setWavelength(xsDataBeam.getWavelength())
xsDataMOSFLMInputIntegration.setDistance(xsDataDetector.getDistance())
xsDataMOSFLMInputIntegration.setDirectory(
XSDataString(strDirectoryFirst))
xsDataMOSFLMInputIntegration.setOscillationWidth(
XSDataAngle(fOscillationRange))
xsDataMOSFLMDetector = EDHandlerXSDataMOSFLMv10.getXSDataMOSFLMDetector(
xsDataDetector)
xsDataMOSFLMInputIntegration.setDetector(xsDataMOSFLMDetector)
iImageStart = None
iImageEnd = None
for xsDataImage in xsDataImageList:
iImageNumber = xsDataImage.getNumber().getValue()
if (iImageStart is None):
iImageStart = iImageNumber
elif (iImageStart > iImageNumber):
iImageStart = iImageNumber
if (iImageEnd is None):
iImageEnd = iImageNumber
elif (iImageEnd < iImageNumber):
iImageEnd = iImageNumber
if xsDataDetector.type.value == "eiger2_16m":
strMOSFLMTemplate = EDUtilsImage.getH5MasterTemplate(
strFilenameFirst, iImageStart)
else:
strMOSFLMTemplate = EDUtilsImage.getTemplate(strFilenameFirst, "#")
xsDataMOSFLMInputIntegration.setTemplate(
XSDataString(strMOSFLMTemplate))
xsDataMOSFLMInputIntegration.setImageStart(XSDataInteger(iImageStart))
xsDataMOSFLMInputIntegration.setImageEnd(XSDataInteger(iImageEnd))
xsDataMOSFLMInputIntegration.setRotationAxisStart(
xsDataGoniostat.getRotationAxisStart())
# print xsDataMOSFLMInputIntegration.marshal()
return xsDataMOSFLMInputIntegration
def generateXSDataMOSFLMInputIntegration(_xsDataIntegrationInput):
"""
Translation from XSDataIntegrationInput to XSDataMOSFLMInputIntegration.
"""
EDVerbose.DEBUG("EDHandlerXSDataMOSFLMv10.generateXSDataMOSFLMInputIntegration")
EDFactoryPluginStatic.loadModule("XSDataMOSFLMv10")
from XSDataMOSFLMv10 import XSDataMOSFLMBeamPosition
from XSDataMOSFLMv10 import XSDataMOSFLMInputIntegration
from XSDataMOSFLMv10 import XSDataMOSFLMNewmat
from XSDataMOSFLMv10 import XSDataMOSFLMMissettingsAngles
xsDataCrystalRefined = _xsDataIntegrationInput.getCrystalRefined()
xsDataIndexingSolutionSelected = _xsDataIntegrationInput.getSelectedIndexingSolution()
if (xsDataCrystalRefined is None):
xsDataCrystalRefined = xsDataIndexingSolutionSelected.getCrystal()
xsDataCollection = _xsDataIntegrationInput.getDataCollection()
xsDataSubWedge = xsDataCollection.getSubWedge()[0]
xsDataImageList = xsDataSubWedge.getImage()
xsDataImageFirst = xsDataImageList[0]
xsDataGoniostat = xsDataSubWedge.getExperimentalCondition().getGoniostat()
xsDataCrystal = xsDataIndexingSolutionSelected.getCrystal()
xsDataOrientation = xsDataIndexingSolutionSelected.getOrientation()
xsDataExperimentalCondition = xsDataIndexingSolutionSelected.getExperimentalConditionRefined()
xsDataDetector = xsDataExperimentalCondition.getDetector()
xsDataBeam = xsDataExperimentalCondition.getBeam()
xsDataMatrixA = xsDataOrientation.getMatrixA()
xsDataMatrixU = xsDataOrientation.getMatrixU()
xsDataCell = xsDataCrystal.getCell()
xsDataMOSFLMInputIntegration = XSDataMOSFLMInputIntegration()
xsDataMOSFLMNewmat = XSDataMOSFLMNewmat()
xsDataMOSFLMNewmat.setRefinedCell(xsDataCell)
xsDataMOSFLMNewmat.setAMatrix(xsDataMatrixA)
xsDataMOSFLMNewmat.setUMatrix(xsDataMatrixU)
xsDataMOSFLMInputIntegration.setMatrix(xsDataMOSFLMNewmat)
xsDataMOSFLMMissettingsAngles = XSDataMOSFLMMissettingsAngles()
xsDataMOSFLMMissettingsAngles.setPhix(XSDataAngle(0.0))
xsDataMOSFLMMissettingsAngles.setPhiy(XSDataAngle(0.0))
xsDataMOSFLMMissettingsAngles.setPhiz(XSDataAngle(0.0))
xsDataMOSFLMNewmat.setMissettingAngles(xsDataMOSFLMMissettingsAngles)
xsDataMOSFLMBeamPosition = XSDataMOSFLMBeamPosition()
xsDataMOSFLMBeamPosition.setX(xsDataDetector.getBeamPositionX())
xsDataMOSFLMBeamPosition.setY(xsDataDetector.getBeamPositionY())
xsDataMOSFLMInputIntegration.setBeam(xsDataMOSFLMBeamPosition)
xsDataMOSFLMInputIntegration.setMosaicity(xsDataCrystal.getMosaicity())
xsDataMOSFLMInputIntegration.setSymmetry(xsDataCrystal.getSpaceGroup().getName())
strPathFirst = xsDataImageFirst.getPath().getValue()
strDirectoryFirst = os.path.dirname(strPathFirst)
strFilenameFirst = os.path.basename(strPathFirst)
fOscillationRange = xsDataGoniostat.getOscillationWidth().getValue()
xsDataMOSFLMInputIntegration.setWavelength(xsDataBeam.getWavelength())
xsDataMOSFLMInputIntegration.setDistance(xsDataDetector.getDistance())
xsDataMOSFLMInputIntegration.setDirectory(XSDataString(strDirectoryFirst))
xsDataMOSFLMInputIntegration.setOscillationWidth(XSDataAngle(fOscillationRange))
xsDataMOSFLMDetector = EDHandlerXSDataMOSFLMv10.getXSDataMOSFLMDetector(xsDataDetector)
xsDataMOSFLMInputIntegration.setDetector(xsDataMOSFLMDetector)
strMOSFLMTemplate = EDUtilsImage.getTemplate(strFilenameFirst, "#")
xsDataMOSFLMInputIntegration.setTemplate(XSDataString(strMOSFLMTemplate))
iImageStart = None
iImageEnd = None
for xsDataImage in xsDataImageList:
iImageNumber = xsDataImage.getNumber().getValue()
if (iImageStart is None):
iImageStart = iImageNumber
elif (iImageStart > iImageNumber):
iImageStart = iImageNumber
if (iImageEnd is None):
iImageEnd = iImageNumber
elif (iImageEnd < iImageNumber):
iImageEnd = iImageNumber
xsDataMOSFLMInputIntegration.setImageStart(XSDataInteger(iImageStart))
xsDataMOSFLMInputIntegration.setImageEnd(XSDataInteger(iImageEnd))
xsDataMOSFLMInputIntegration.setRotationAxisStart(xsDataGoniostat.getRotationAxisStart())
#print xsDataMOSFLMInputIntegration.marshal()
return xsDataMOSFLMInputIntegration