def testCreateOutputFileDictionary(self):
strPathToCCP4iResult = os.path.join(self.getPluginTestsDataHome(),
"XSDataResultCCP4i_reference.xml")
strXML = self.readAndParseFile(strPathToCCP4iResult)
EDFactoryPluginStatic.loadModule("XSDataCCP4iv1_1")
from XSDataCCP4iv1_1 import XSDataResultCCP4i
xsDataResultCCP4i = XSDataResultCCP4i.parseString(strXML)
xsDataStringListOfOutputFiles = xsDataResultCCP4i.getListOfOutputFiles(
)
pluginMXCuBE = self.createPlugin()
pluginMXCuBE.configure()
strResultCharacterisationFileName = "XSDataResultCharacterisation_reference.xml"
strPathToReferenceFile = os.path.join(
self.getPluginTestsDataHome(), strResultCharacterisationFileName)
strXML = self.readAndParseFile(strPathToReferenceFile)
xsDataResultCharacterisation = XSDataResultCharacterisation.parseString(
strXML)
strDNAFileDirectoryPath = pluginMXCuBE.createDNAFileDirectoryPath(
xsDataResultCharacterisation)
pluginMXCuBE.createDNAFileDirectory(strDNAFileDirectoryPath)
xsDataDictionary = pluginMXCuBE.createOutputFileDictionary(
xsDataStringListOfOutputFiles, xsDataResultCharacterisation,
strDNAFileDirectoryPath)
EDAssert.equal(False, xsDataDictionary is None)
shutil.rmtree(strDNAFileDirectoryPath)
def testCreateDNAFileDirectoryPath(self):
pluginMXCuBE = self.createPlugin()
pluginMXCuBE.configure()
strResultCharacterisationFileName = "XSDataResultCharacterisation_reference.xml"
strPathToReferenceFile = os.path.join(self.getPluginTestsDataHome(),
strResultCharacterisationFileName)
strXML = self.readAndParseFile(strPathToReferenceFile)
xsDataResultCharacterisation = XSDataResultCharacterisation.parseString(strXML)
strDNAFileDirectoryPath = pluginMXCuBE.createDNAFileDirectoryPath(xsDataResultCharacterisation)
strDNAFileDirectoryPathExpected = os.path.join(EDUtilsPath.getEdnaHome(), "tests", "data", "images", "testscale_1_dnafiles")
EDAssert.equal(strDNAFileDirectoryPathExpected, strDNAFileDirectoryPath)
def testGetXSDataResultCharacterisation(self):
strPathToCCP4iResult = os.path.join(self.getPluginTestsDataHome(),
"XSDataResultCCP4i_reference.xml")
strXML = self.readAndParseFile(strPathToCCP4iResult)
EDFactoryPluginStatic.loadModule("XSDataCCP4iv1_1")
from XSDataCCP4iv1_1 import XSDataResultCCP4i
xsDataResultCCP4i = XSDataResultCCP4i.parseString(strXML)
strListOfOutputFiles = xsDataResultCCP4i.getListOfOutputFiles().getValue()
pluginMXCuBE = self.createPlugin()
xsDataResultCharacterisation = pluginMXCuBE.getXSDataResultCharacterisation(strListOfOutputFiles)
strPathToResultCharacterisationReference = os.path.join(self.getPluginTestsDataHome(),
"EDPluginControlCharacterisationv1_1_dataOutput.xml")
xsDataResultCharacterisationReference = XSDataResultCharacterisation.parseFile(strPathToResultCharacterisationReference)
EDAssert.equal(xsDataResultCharacterisationReference.marshal(), xsDataResultCharacterisation.marshal())
def getXSDataResultCharacterisation(self, _strListOfOutputFiles):
listResult = _strListOfOutputFiles.split()
# Search for the outputfile
xsDataResultCharacterisation = None
strPathToXSDataResultCharacteristion = None
for strLine in listResult:
if (strLine.find("dataOutput.xml") != -1):
strPathToXSDataResultCharacteristion = strLine
if (strPathToXSDataResultCharacteristion is not None):
xsDataResultCharacterisation = XSDataResultCharacterisation.parseFile(strPathToXSDataResultCharacteristion)
else:
errorMessage = EDMessage.ERROR_DATA_HANDLER_02 % ("EDPluginControlInterfaceToMXCuBEv1_2.getXSDataResultCharacterisation", "Cannot find dataOutput.xml file in %s" % _strListOfOutputFiles)
EDVerbose.error(errorMessage)
self.addErrorMessage(errorMessage)
raise RuntimeError, errorMessage
return xsDataResultCharacterisation
def getXSDataResultCharacterisation(self, _strListOfOutputFiles):
listResult = _strListOfOutputFiles.split()
# Search for the outputfile
xsDataResultCharacterisation = None
strPathToXSDataResultCharacteristion = None
for strLine in listResult:
if (strLine.find("dataOutput.xml") != -1):
strPathToXSDataResultCharacteristion = strLine
if (strPathToXSDataResultCharacteristion is not None):
xsDataResultCharacterisation = XSDataResultCharacterisation.parseFile(strPathToXSDataResultCharacteristion)
else:
errorMessage = EDMessage.ERROR_DATA_HANDLER_02 % ("EDPluginControlInterfaceToMXCuBEv1_2.getXSDataResultCharacterisation", "Cannot find dataOutput.xml file in %s" % _strListOfOutputFiles)
EDVerbose.error(errorMessage)
self.addErrorMessage(errorMessage)
raise RuntimeError, errorMessage
return xsDataResultCharacterisation
def testCreateDNAFileDirectoryPath(self):
pluginMXCuBE = self.createPlugin()
pluginMXCuBE.configure()
strResultCharacterisationFileName = "XSDataResultCharacterisation_reference.xml"
strPathToReferenceFile = os.path.join(
self.getPluginTestsDataHome(), strResultCharacterisationFileName)
strXML = self.readAndParseFile(strPathToReferenceFile)
xsDataResultCharacterisation = XSDataResultCharacterisation.parseString(
strXML)
strDNAFileDirectoryPath = pluginMXCuBE.createDNAFileDirectoryPath(
xsDataResultCharacterisation)
strDNAFileDirectoryPathExpected = os.path.join(
EDUtilsPath.getEdnaHome(), "tests", "data", "images",
"testscale_1_dnafiles")
EDAssert.equal(strDNAFileDirectoryPathExpected,
strDNAFileDirectoryPath)
def testGetXSDataResultCharacterisation(self):
strPathToCCP4iResult = os.path.join(self.getPluginTestsDataHome(),
"XSDataResultCCP4i_reference.xml")
strXML = self.readAndParseFile(strPathToCCP4iResult)
EDFactoryPluginStatic.loadModule("XSDataCCP4iv1_1")
from XSDataCCP4iv1_1 import XSDataResultCCP4i
xsDataResultCCP4i = XSDataResultCCP4i.parseString(strXML)
strListOfOutputFiles = xsDataResultCCP4i.getListOfOutputFiles(
).getValue()
pluginMXCuBE = self.createPlugin()
xsDataResultCharacterisation = pluginMXCuBE.getXSDataResultCharacterisation(
strListOfOutputFiles)
strPathToResultCharacterisationReference = os.path.join(
self.getPluginTestsDataHome(),
"EDPluginControlCharacterisationv1_1_dataOutput.xml")
xsDataResultCharacterisationReference = XSDataResultCharacterisation.parseFile(
strPathToResultCharacterisationReference)
EDAssert.equal(xsDataResultCharacterisationReference.marshal(),
xsDataResultCharacterisation.marshal())
def testCreateOutputFileDictionary(self):
strPathToCCP4iResult = os.path.join(self.getPluginTestsDataHome(),
"XSDataResultCCP4i_reference.xml")
strXML = self.readAndParseFile(strPathToCCP4iResult)
EDFactoryPluginStatic.loadModule("XSDataCCP4iv1_1")
from XSDataCCP4iv1_1 import XSDataResultCCP4i
xsDataResultCCP4i = XSDataResultCCP4i.parseString(strXML)
xsDataStringListOfOutputFiles = xsDataResultCCP4i.getListOfOutputFiles()
pluginMXCuBE = self.createPlugin()
pluginMXCuBE.configure()
strResultCharacterisationFileName = "XSDataResultCharacterisation_reference.xml"
strPathToReferenceFile = os.path.join(self.getPluginTestsDataHome(),
strResultCharacterisationFileName)
strXML = self.readAndParseFile(strPathToReferenceFile)
xsDataResultCharacterisation = XSDataResultCharacterisation.parseString(strXML)
strDNAFileDirectoryPath = pluginMXCuBE.createDNAFileDirectoryPath(xsDataResultCharacterisation)
pluginMXCuBE.createDNAFileDirectory(strDNAFileDirectoryPath)
xsDataDictionary = pluginMXCuBE.createOutputFileDictionary(xsDataStringListOfOutputFiles, xsDataResultCharacterisation, strDNAFileDirectoryPath)
EDAssert.equal(False, xsDataDictionary is None)
shutil.rmtree(strDNAFileDirectoryPath)