def __init__(self, env, aln=None, **vars):
self.__modpt = _modeller.mod_profile_new(self)
self.env = env.copy()
if aln is not None:
_modeller.mod_profile_from_aln(aln=aln.modpt,
prf=self.modpt,
libs=self.env.libs.modpt)
elif len(vars) > 0:
self.read(**vars)
def to_profile(self):
"""Converts the alignment to profile format"""
prf = profile.profile(self.env)
_modeller.mod_profile_from_aln(aln=self.modpt, prf=prf.modpt,
libs=self.env.libs.modpt)
return prf
def aln_to_prof(self, **keys):
aln = self.get_aln()
prf = self.get_prf()
libs = self.get_libs()
_modeller.mod_profile_from_aln(aln, prf, libs)