def makeObject(self, host):
typ = self.type()
args = self.args()
if typ == 'plot':
obj = pg.PlotWidget(name=self.name(), **args)
elif typ == 'imageView':
obj = pg.ImageView(**args)
elif typ == 'canvas':
obj = Canvas.Canvas(**args)
elif typ == 'fileInput':
obj = FileLoader.FileLoader(host.dataManager(), **args)
#elif typ == 'database':
#obj = DatabaseGui.DatabaseGui(host.dataManager(), **args)
elif typ == 'table':
obj = pg.TableWidget(**args)
elif typ == 'dataTree':
obj = pg.DataTreeWidget(**args)
elif typ == 'parameterTree':
obj = pg.parametertree.ParameterTree(**args)
elif typ == 'graphicsView':
obj = pg.GraphicsView(**args)
elif typ == 'graphicsLayout':
obj = pg.GraphicsLayoutWidget(**args)
elif typ == 'viewBox':
obj = pg.GraphicsView()
obj.setCentralItem(pg.ViewBox(**args))
else:
raise Exception(
"Cannot automatically create element '%s' (type=%s)" %
(self.name, typ))
#self.setObject(obj) ## handled indirectly..
return obj
def __init__(self, parent=None):
Qt.QWidget.__init__(self, parent)
self.layout = Qt.QGridLayout()
self.setLayout(self.layout)
self.view = pg.ImageView()
self.layout.addWidget(self.view, 0, 0)
self.ctrlWidget = Qt.QWidget()
self.layout.addWidget(self.ctrlWidget, 0, 1)
self.maskItem = pg.ImageItem()
self.maskItem.setZValue(10)
self.maskItem.setCompositionMode(Qt.QPainter.CompositionMode_Multiply)
lut = np.zeros((256, 3), dtype='ubyte')
lut[:, 0:2] = np.arange(256).reshape(256, 1)
self.maskItem.setLookupTable(lut)
kern = np.fromfunction(
lambda x, y: np.clip(((5 - (x - 5)**2 +
(y - 5)**2)**0.5 * 255), 0, 255), (11, 11))
self.maskItem.setDrawKernel(kern, mask=kern, center=(5, 5), mode='add')
self.view.addItem(self.maskItem)
self.view.sigTimeChanged.connect(self.updateMaskImage)
def __init__(self):
QtGui.QWidget.__init__(self)
self.layout = QtGui.QVBoxLayout()
self.setLayout(self.layout)
self.imv1 = pg.ImageView()
self.layout.addWidget(self.imv1)
self.plt1 = pg.PlotWidget()
self.layout.addWidget(self.plt1)
self.base_time_rgn = pg.LinearRegionItem([0.07, 0.099])
self.test_time_rgn = pg.LinearRegionItem([0.104, 0.112])
for time_rgn in (self.base_time_rgn, self.test_time_rgn):
self.plt1.addItem(time_rgn)
time_rgn.sigRegionChangeFinished.connect(self.time_rgn_changed)
self.plot_data = []
def __init__(self, *args):
AnalysisModule.__init__(self, *args)
self.layout = Qt.QGridLayout()
self.setLayout(self.layout)
self.splitter = Qt.QSplitter()
self.layout.addWidget(self.splitter)
self.ptree = ParameterTree()
self.splitter.addWidget(self.ptree)
self.imageView = pg.ImageView()
self.splitter.addWidget(self.imageView)
self.params = Parameter(name='imager', children=[
dict(name='scanner', type='interface', interfaceTypes=['scanner']),
dict(name='detectors', type='group', addText="Add detector.."),
dict(name='decomb', type='float', readonly=False, value=20e-6, suffix='s', siPrefix=True, bounds=[0, 1e-3], step=1e-6, decimals=5, children=[
dict(name='auto', type='action'),
dict(name='subpixel', type='bool', value=False),
]),
dict(name='downsample', type='int', value=1, suffix='x', bounds=[1,None]),
dict(name='display', type='bool', value=True),
dict(name='scanProgram', type='list', values=[]),
dict(name='Objective', type='str', value='Unknown', readonly=True),
dict(name='Filter', type='str', value='Unknown', readonly=True),
])
self.ptree.setParameters(self.params, showTop=False)
self.params.sigTreeStateChanged.connect(self.update)
self.params.child('detectors').sigAddNew.connect(self.addDetectorClicked)
self.params.child('decomb', 'auto').sigActivated.connect(self.autoDecomb)
self.man = getManager()
self.scannerDev = self.man.getDevice(self.params['scanner'])
# find first scope device that is parent of scanner
dev = self.scannerDev
while dev is not None and not isinstance(dev, Microscope):
dev = dev.parentDevice()
self.scopeDev = dev
self.lastFrame = None
# self.SUF = SUFA.ScannerUtilities()
# self.ui.alphaSlider.valueChanged.connect(self.imageAlphaAdjust)
self.img = pg.ImageItem() ## image shown in camera module
self.img.setLookupTable(self.imageView.ui.histogram.getLookupTable) # image fetches LUT from the ImageView
self.imageView.ui.histogram.sigLevelsChanged.connect(self._updateCamModImage)
self.imageView.imageItem.setAutoDownsample(True)
def setCurrentFile(self, file):
#print "=============== set current file ============"
if file is self.current:
return
## What if we just want to update the data display?
#self.clear()
if file is None:
self.current = None
return
if file.isDir():
## Sequence or not?
return
else:
typ = file.fileType()
if typ is None:
return
else:
image = False
with pg.BusyCursor():
data = file.read()
if typ == 'ImageFile':
image = True
elif typ == 'MetaArray':
if data.ndim == 2 and not data.axisHasColumns(
0) and not data.axisHasColumns(1):
image = True
elif data.ndim > 2:
image = True
else:
return
with pg.BusyCursor():
if image:
if self.currentType == 'image' and len(self.widgets) > 0:
try:
self.widgets[0].setImage(data, autoRange=False)
except:
print "widget types:", map(type, self.widgets)
raise
else:
self.clear()
w = pg.ImageView(self)
#print "add image:", w.ui.roiPlot.plotItem
#self.plots = [weakref.ref(w.ui.roiPlot.plotItem)]
self.addWidget(w)
w.setImage(data)
self.widgets.append(w)
self.currentType = 'image'
else:
self.clear()
w = pg.MultiPlotWidget(self)
self.addWidget(w)
w.plot(data)
self.currentType = 'plot'
self.widgets.append(w)
#print "add mplot:", w.mPlotItem.plots
#self.plots = [weakref.ref(p[0]) for p in w.mPlotItem.plots]
if (hasattr(data, 'implements') and data.implements('MetaArray')):
if self.dictWidget is None:
w = DictView(data._info)
self.dictWidget = w
#w.setText(str(data._info[-1]))
self.addWidget(w)
self.widgets.append(w)
h = self.size().height()
self.setSizes([h * 0.8, h * 0.2])
else:
self.dictWidget.setData(data._info)
def __init__(self, mod, dev, mode, recordDir):
self.mod = weakref.ref(mod)
self.dev = dev
self.mode = mode
self.writable = mode != None
self.recordDir = recordDir.getDir(self.dev, create=self.writable)
if self.writable:
self.recordDir.setInfo(mode=mode)
else:
mode = self.recordDir.info()['mode']
if mode[0] == 'v':
self.units = 'A'
else:
self.units = 'V'
self.rawDataFile = None
self.envelopeFile = None
self.spectrogramFile = None
self.resetDisplay = True
self.showNewRecords = True
Qt.QSplitter.__init__(self, Qt.Qt.Vertical)
self.plot = pg.PlotWidget(labels={
'left': ('Primary', self.units),
'bottom': ('Time', 's')
},
title="%s (%s)" % (dev, mode))
self.plot.setDownsampling(auto=True)
self.plot.setClipToView(True)
self.addWidget(self.plot)
self.envelopePlot = pg.PlotWidget(labels={
'left': ('Mean, Stdev, Peaks', self.units),
'bottom': ('Time', 's')
})
self.addWidget(self.envelopePlot)
self.specView = pg.PlotItem(labels={
'left': ('Frequency', 'Hz'),
'bottom': ('Time', 's')
})
self.spectrogram = pg.ImageView(view=self.specView)
self.specView.setAspectLocked(False)
self.spectrogram.imageItem.setAutoDownsample(True)
self.addWidget(self.spectrogram)
self.setStretchFactor(0, 10)
self.setStretchFactor(1, 15)
self.setStretchFactor(2, 30)
self.specLine = pg.InfiniteLine()
self.spectrogram.addItem(self.specLine)
self.envLine = pg.InfiniteLine(movable=True)
self.envelopePlot.addItem(self.envLine)
self.envLine.sigDragged.connect(self.lineDragged)
if not self.writable:
# Load previously collected data
self.loadRecord()