def bst_openaire_altmetric():
"""
"""
recids = search_pattern(p="0->Z", f="0247_a")
a = Altmetric()
for recid in recids:
try:
# Check if we already have an Altmetric id
sysno_inst = get_fieldvalues(recid, "035__9")
if ['Altmetric'] in sysno_inst:
continue
doi_val = get_fieldvalues(recid, "0247_a")[0]
json_res = a.doi(doi_val)
rec = {}
record_add_field(rec, "001", controlfield_value=str(recid))
if json_res:
record_add_field(rec, '035', subfields=[('a',
str(json_res['altmetric_id'])), ('9', 'Altmetric')])
bibupload(rec, opt_mode='correct')
except AltmetricHTTPException, e:
register_exception(prefix='Altmetric error (status code %s): %s' %
(e.status_code, str(e)), alert_admin=False)
def bst_openaire_altmetric():
"""
"""
recids = search_pattern(p="0->Z", f="0247_a")
a = Altmetric()
for recid in recids:
try:
# Check if we already have an Altmetric id
sysno_inst = get_fieldvalues(recid, "035__9")
if ['Altmetric'] in sysno_inst:
continue
doi_val = get_fieldvalues(recid, "0247_a")[0]
json_res = a.doi(doi_val)
rec = {}
record_add_field(rec, "001", controlfield_value=str(recid))
if json_res:
record_add_field(rec,
'035',
subfields=[('a',
str(json_res['altmetric_id'])),
('9', 'Altmetric')])
bibupload(rec, opt_mode='correct')
except AltmetricHTTPException, e:
register_exception(prefix='Altmetric error (status code %s): %s' %
(e.status_code, str(e)),
alert_admin=False)
def openaire_altmetric_update(recids, upload=True):
"""
Retrieve Altmetric information for a record.
"""
logger.debug("Checking Altmetric for recids %s" % recids)
a = Altmetric()
records = []
for recid in recids:
logger.debug("Checking Altmetric for recid %s" % recid)
try:
# Check if we already have an Altmetric id
sysno_inst = get_fieldvalues(recid, "035__9")
if ['Altmetric'] in sysno_inst:
continue
doi_val = get_fieldvalues(recid, "0247_a")[0]
logger.debug("Found DOI %s" % doi_val)
json_res = a.doi(doi_val)
logger.debug("Altmetric response: %s" % json_res)
rec = {}
record_add_field(rec, "001", controlfield_value=str(recid))
if json_res:
record_add_field(rec,
'035',
subfields=[('a',
str(json_res['altmetric_id'])),
('9', 'Altmetric')])
records.append(rec)
except AltmetricHTTPException as e:
logger.warning(
'Altmetric error for recid %s with DOI %s (status code %s): %s'
% (recid, doi_val, e.status_code, str(e)))
register_exception(prefix='Altmetric error (status code %s): %s' %
(e.status_code, str(e)),
alert_admin=False)
except IndexError:
logger.debug("No DOI found")
pass
if upload and records:
if len(records) == 1:
bibupload(record=records[0], file_prefix="altmetric")
else:
bibupload(collection=records, file_prefix="altmetric")
return records
def getAltScore(inputDF):
"""This function reads in an already existing dataframe, typically the one
obtained from the searchPubMed function. It returns said dataframe with an
additional column, giving the Altmetric score for a given article DOI in the
table according to Altmetrics.
Parameters:
inputDF(Pandas.DataFrame): this is a Pandas dataframe with PubMed ID as indices,
and a column labelled "DOI" with all the DOIs for the associated PubMed ID.
Returns:
Pandas.DataFrame, identical to input with addition of column "Altmetric Score,"
giving the Altmetric score, calculated by Altmetrics, for a given article.
Example:
queryDF = getAltScore(queryDF)"""
#First gather the DOI for each article in the dataframe.
doiList = inputDF["DOI"].tolist()
listAltScore = []
count = 1
print("Getting Altmetrics Score")
#Now for every DOI, use CrossRef to find the associated Altmetrics score.
for entry in doiList:
print(count)
try:
if entry != "":
a = Altmetric()
thisDOI = a.doi(entry)
extractScore = thisDOI["score"]
listAltScore.append(extractScore)
else:
listAltScore.append(None)
except:
listAltScore.append(None)
count = count + 1
#Now add a column of Altmetrics scores to the dataframe.
inputDF["Altmetric Score"] = listAltScore
print("Altmetrics Search Complete!")
return inputDF
def openaire_altmetric_update(recids, upload=True):
"""
Retrieve Altmetric information for a record.
"""
logger.debug("Checking Altmetric for recids %s" % recids)
a = Altmetric()
records = []
for recid in recids:
logger.debug("Checking Altmetric for recid %s" % recid)
try:
# Check if we already have an Altmetric id
sysno_inst = get_fieldvalues(recid, "035__9")
if ["Altmetric"] in sysno_inst:
continue
doi_val = get_fieldvalues(recid, "0247_a")[0]
logger.debug("Found DOI %s" % doi_val)
json_res = a.doi(doi_val)
logger.debug("Altmetric response: %s" % json_res)
rec = {}
record_add_field(rec, "001", controlfield_value=str(recid))
if json_res:
record_add_field(rec, "035", subfields=[("a", str(json_res["altmetric_id"])), ("9", "Altmetric")])
records.append(rec)
except AltmetricHTTPException as e:
logger.warning(
"Altmetric error for recid %s with DOI %s (status code %s): %s"
% (recid, doi_val, e.status_code, str(e))
)
register_exception(
prefix="Altmetric error (status code %s): %s" % (e.status_code, str(e)), alert_admin=False
)
except IndexError:
logger.debug("No DOI found")
pass
if upload and records:
if len(records) == 1:
bibupload(record=records[0], file_prefix="altmetric")
else:
bibupload(collection=records, file_prefix="altmetric")
return records
def openaire_altmetric_update(recids, upload=True):
"""
Retrieve Altmetric information for a record.
"""
logger.debug("Checking Altmetric for recids %s" % recids)
a = Altmetric()
records = []
for recid in recids:
logger.debug("Checking Altmetric for recid %s" % recid)
try:
# Check if we already have an Altmetric id
sysno_inst = get_fieldvalues(recid, "035__9")
if ['Altmetric'] in sysno_inst:
continue
doi_val = get_fieldvalues(recid, "0247_a")[0]
logger.debug("Found DOI %s" % doi_val)
json_res = a.doi(doi_val)
logger.debug("Altmetric response: %s" % json_res)
rec = {}
record_add_field(rec, "001", controlfield_value=str(recid))
if json_res:
record_add_field(rec, '035', subfields=[
('a', str(json_res['altmetric_id'])),
('9', 'Altmetric')
])
records.append(rec)
except AltmetricHTTPException, e:
logger.warning(
'Altmetric error for recid %s with DOI %s (status code %s): %s'
% (recid, doi_val, e.status_code, str(e))
)
register_exception(
prefix='Altmetric error (status code %s): %s' % (
e.status_code, str(e)),
alert_admin=False
)
except IndexError:
logger.debug("No DOI found")
pass
def update(self):
rsp = None
a = Altmetric(settings.ALTMETRIC_API_KEY)
ids = self.paper.get_ids()
# Fetch altmetric data based on paper supported id
try:
if 'doi' in ids:
rsp = a.doi(ids.get('doi', ''))
if not rsp and 'arx' in ids:
rsp = a.arxiv(ids.get('arx'))
if not rsp and 'pmi' in ids:
rsp = a.pmid(ids.get('pmi'))
except AltmetricHTTPException:
raise
# Parse json
if rsp:
self.score = rsp.get('score')
self.altmetric_id = rsp.get('altmetric_id')
self.altmetric_jid = rsp.get('altmetric_jid', '')
self.score_1d = rsp.get('history').get('1d')
self.score_2d = rsp.get('history').get('2d')
self.score_3d = rsp.get('history').get('3d')
self.score_4d = rsp.get('history').get('4d')
self.score_5d = rsp.get('history').get('5d')
self.score_6d = rsp.get('history').get('6d')
self.score_1w = rsp.get('history').get('1w')
self.score_1m = rsp.get('history').get('1m')
self.score_3m = rsp.get('history').get('3m')
self.score_6m = rsp.get('history').get('6m')
self.score_1y = rsp.get('history').get('1y')
self.cited_by_posts_count = rsp.get('cited_by_posts_count', 0)
self.cited_by_delicious_count = rsp.get('cited_by_delicious_count',
0)
self.cited_by_fbwalls_count = rsp.get('cited_by_fbwalss_count', 0)
self.cited_by_feeds_count = rsp.get('cited_by_feeds_count', 0)
self.cited_by_forum_count = rsp.get('cited_by_forum_count', 0)
self.cited_by_gplus_count = rsp.get('cited_by_gplus_count', 0)
self.cited_by_linkedin_count = rsp.get('cited_by_linkedin_count',
0)
self.cited_by_msm_count = rsp.get('cited_by_msm_count', 0)
self.cited_by_peer_review_sites_count = rsp.get(
'cited_by_peer_review_sites_count', 0)
self.cited_by_pinners_count = rsp.get('cited_by_pinners_count', 0)
self.cited_by_policies_count = rsp.get('cited_by_policies_count',
0)
self.cited_by_qs_count = rsp.get('cited_by_qs_count', 0)
self.cited_by_rdts_count = rsp.get('cited_by_rdts_count', 0)
self.cited_by_rh_count = rsp.get('cited_by_rh_count', 0)
self.cited_by_tweeters_count = rsp.get('cited_by_tweeters_count',
0)
self.cited_by_videos_count = rsp.get('cited_by_videos_count', 0)
self.cited_by_weibo_count = rsp.get('cited_by_weibo_count', 0)
self.cited_by_wikipedia_count = rsp.get('cited_by_wikipedia_count',
0)
if isinstance(rsp.get('readers'), dict):
self.readers_citeulike = rsp.get('readers').get('citeulike')
self.readers_mendeley = rsp.get('readers').get('mendeley')
self.image = rsp.get('images').get('small')
match = re.findall(r'types=(P?[\w]+)', self.image)
if match:
self.type = match[0]
# save
self.save()
