def main(arglist): # Parse parser = create_parser() args = parser.parse_args(arglist) kwargs = vars(args) if 'run_keys' not in kwargs and not kwargs['run_keys']: kwargs['run_keys'] = ["fsf", "feat"] if 'vars' not in kwargs: template_vars = {} else: template_vars = dict(kwargs.pop("vars")) # Logger loglevel = get_loglevel(args.verbosity) log = create_logger("coordinate_subjects", loglevel, args.log) subjects = kwargs.pop("subjects") for subject in subjects: try: log.title("Subject: %s" % subject) template_vars['subject'] = subject fromYamlSubject(user_template_vars=template_vars, logger=log, **kwargs) del template_vars['subject'] except (LoggerError, LoggerCritical) as err: pass
def main(arglist): # Parse parser = create_parser() args = parser.parse_args(arglist) kwargs = vars(args) if 'run_keys' not in kwargs: kwargs['run_keys'] = ["decon", "reml", "beta_series"] if 'vars' not in kwargs: template_vars = {} else: template_vars = dict(kwargs.pop("vars")) subjects = kwargs.pop("subjects") for subject in subjects: try: template_vars['subject'] = subject fromYamlSubject(user_template_vars=template_vars, **kwargs) del template_vars['subject'] except (LoggerError, LoggerCritical) as err: pass