def test():
"""
test
"""
l = open('forces.log', 'w')
logger = Logger(sys.stderr, l)
check_forces('apbs-forces.out', 'polarforces', 'apolarforces', logger)
def test():
"""
test
"""
lval = open("forces.log", "w")
logger = Logger(sys.stderr, lval)
check_forces("apbs-forces.out", "polarforces", "apolarforces", logger)
def test():
"""
Run the test
"""
lval = open("energy.log", "w")
logger = Logger(sys.stderr, lval) # noqa F841
energy_list = check_energies("actio_stdout.txt")
print(energy_list)
def test():
"""
Run the test
"""
l = open('energy.log', 'w')
logger = Logger(sys.stderr, l)
energy_list = check_energies('actio_stdout.txt')
print(energy_list)
def main():
"""
Parse command line options and run tests with given options
"""
parser = OptionParser()
# Describes the available options.
parser.add_option(
"-e",
"--executable",
dest="executable",
type="string",
default="apbs",
help="Set the apbs executable to FILE",
metavar="FILE",
)
parser.add_option(
"-c",
"--test_config",
dest="test_config",
type="string",
default="test_cases.cfg",
help="Set the test configuration file to FILE",
metavar="FILE",
)
parser.add_option(
"-t",
"--target_test",
dest="target_test",
type="string",
action="append",
default=[],
help="Set the test to run to TEST",
metavar="TEST",
)
parser.add_option(
"-o",
"--ocd",
action="store_true",
dest="ocd",
help="Run APBS in OCD mode",
)
parser.add_option(
"-l",
"--log_file",
dest="log_file",
type="string",
default="test.log",
help="Save the test log to FILE.",
metavar="FILE",
)
parser.add_option(
"-b",
"--benchmark",
action="store_const",
const=1,
dest="benchmark",
help="Perform benchmarking.",
)
# Parse the command line and extract option values
(options, args) = parser.parse_args()
# Messages will go to stdout, log messages will go to the supplied log file
message_fd = sys.stderr
logfile_fd = sys.stderr
# Verify that the log file is writable
try:
logfile_fd = open(options.log_file, "w")
except IOError as err:
parser.error(
f"Couldn't open log_file {options.log_file}: {err.strerror}")
# Set up the logger with the message and log file descriptor
logger = Logger(message_fd, logfile_fd)
# Read the test cases file
config = ConfigParser()
config.optionxform = str
config.read(options.test_config)
# Make sure that the apbs binary can be found
binary = test_binary(options.executable, logger)
# Get the names of all the test sections to run.
test_sections = []
if "all" in options.target_test or options.target_test == []:
test_sections = config.sections()
print("Testing all sections")
else:
test_sections = options.target_test
print("The following sections will be tested: " + ", ".join(test_sections))
print("=" * 80)
# Run each test that has been requested
for test_name in test_sections:
print("Running tests for " + test_name + " section")
# Verify that the test is described in the test cases file
if test_name not in config.sections():
print(" " + test_name + " section not found in " +
options.test_config)
return 1
# Grab the test directory
test_directory = config.get(test_name, "input_dir")
config.remove_option(test_name, "input_dir")
# Check if there is a setup step.
test_setup = None
try:
test_setup = config.get(test_name, "setup")
config.remove_option(test_name, "setup")
except NoOptionError:
pass
# Run the test!
run_test(
binary,
config.items(test_name),
test_name,
test_directory,
test_setup,
logger,
options.ocd,
)
return 0
def main():
"""
Parse command line options and run tests with given options
"""
parser = OptionParser()
#Describes the available options.
parser.add_option(
'-c', '--test_config', dest='test_config',
type='string', default='test_cases.cfg',
help="Set the test configuration file to FILE", metavar="FILE"
)
parser.add_option(
'-t', '--target_test', dest='target_test',
type='string', action='append', default=[],
help="Set the test to run to TEST", metavar="TEST"
)
parser.add_option(
'-o', '--ocd', action='store_true', dest='ocd',
help="Run APBS in OCD mode"
)
parser.add_option(
'-l', '--log_file', dest='log_file', type='string', default='test.log',
help="Save the test log to FILE.", metavar="FILE"
)
# Parse the command line and extract option values
( options, args ) = parser.parse_args()
# Messages will go to stdout, log messages will go to the supplied log file
message_fd = sys.stdout
logfile_fd = None
# Verify that the log file is writable
try:
logfile_fd = open( options.log_file, 'w' )
except IOError as err:
parser.error( "Could't open log_file %s: %s" % ( options.log_file, err.strerror ) )
# Set up the logger with the message and log file descriptor
logger = Logger( message_fd, logfile_fd )
# Read the test cases file
config = ConfigParser()
config.read( options.test_config )
# Make sure that the apbs binary can be found
binary = test_binary()
if binary == '':
parser.error( "Coulnd't detect an apbs binary in the path or local bin directory" )
# Get the names of all the test sections to run.
test_sections = []
if 'all' in options.target_test or options.target_test == []:
test_sections = config.sections()
print "Testing all sections"
else:
test_sections = options.target_test
print "The following sections will be tested: " + ', '.join( test_sections )
print '=' * 80
# Run each test that has been requested
for test_name in test_sections:
print "Running tests for " + test_name + " section"
# Verify that the test is described in the test cases file
if test_name not in config.sections():
print " " + test_name + " section not found in " + options.test_config
print " skipping..."
continue
# As each test runs, remove the value so it can't be run twice
test_directory = config.get( test_name, 'input_dir' )
config.remove_option( test_name, 'input_dir' )
# Run the test!
run_test( binary, config.items( test_name ), test_name, test_directory, logger, options.ocd )