def create_app():
"""This function initializes the app.
The app will be as a [Flask](https://palletsprojects.com/p/flask/) app initialized.
In addition all the api routes and databases will be initialized here.
The list of routes and the initialization method for them can be found here: `api.resources`
The database initialization methods can be found here: `api.db`
"""
app = Flask(__name__)
init_resources(app)
config = ProductionConfig
if app.config['ENV'] == 'development':
config = DevelopmentConfig
elif app.config['ENV'] == 'testing':
config = TestingConfig
app.config.from_object(config)
if app.config['ENV'] == 'testing':
from api.db import init_db_mock
init_db_mock(app)
else:
from api.db import init_db
init_db(app)
return app
def run_database_update():
# Create a temporary application
# Init the database
init_db(context=False)
# # Load factory tables
# # Run known ingest
jobs = [
('milestone',
factory_milestones,
{}
),
('country',
factory_countries,
{}
),
('product',
'https://raw.githubusercontent.com/c19-rnd-dashboard/py-api-vac-rnd-dash/master/data/vaccines/vaccineworkfile4.csv',
{'loader': "unfiltered_csv"}
),
('trial',
'https://raw.githubusercontent.com/ebmdatalab/covid_trials_tracker-covid/master/notebooks/processed_data_sets/trial_list_2020-05-26.csv',
{}
),
]
for job in jobs:
run_ingest(category=job[0], source=job[1], **job[2])
def app():
"""Fixture to return an app instance from the factory."""
db_fd, db_path = tempfile.mkstemp()
app = create_app({
'TESTING': True,
'DATABASE': db_path,
})
with app.app_context():
init_db()
yield app
os.close(db_fd)
os.unlink(db_path)
from api.db import init_db from endpoints import app init_db() app.run()
if txn is None:
return
if exception:
db.session.rollback()
else:
db.session.commit()
@app.route('/')
def hello_world():
return 'Hello World!'
todo_view = views.TodoApi.as_view('todo_api')
app.add_url_rule('/todos/',
defaults={'todo_id': None},
view_func=todo_view,
methods=[
'GET',
])
app.add_url_rule('/todos/', view_func=todo_view, methods=[
'POST',
])
app.add_url_rule('/todos/<int:todo_id>',
view_func=todo_view,
methods=['GET', 'PUT', 'DELETE'])
if not db.session:
db.init_db()
from api import views, db, server
import unittest
import sys
db.init_db('todo_test')
db.Base.metadata.create_all(bind=db.engine)
server.app.debug = True
import api
from api.db import init_db
from api.utils.ingest import run_ingest
init_db(context=False)
source = 'https://raw.githubusercontent.com/c19-rnd-dashboard/py-api-vac-rnd-dash/master/data/vaccines/vaccineworkfile2.csv'
params = {'loader': "unfiltered_csv"}
run_ingest(category='product', source=source, **params)
def test_init_db_command(self):
out = StringIO()
init_db(out)
output = out.getvalue().strip()
print('init-db output: ', output)
self.assertIn('init', output)
