def to_client_json(self, model):
result = model.asdict()
# Participants that withdrew more than 48 hours ago should have fields other than
# WITHDRAWN_PARTICIPANT_FIELDS cleared.
if (model.withdrawalStatus == WithdrawalStatus.NO_USE
and model.withdrawalTime <
clock.CLOCK.now() - WITHDRAWN_PARTICIPANT_VISIBILITY_TIME):
result = {k: result.get(k) for k in WITHDRAWN_PARTICIPANT_FIELDS}
result['participantId'] = to_client_participant_id(model.participantId)
biobank_id = result.get('biobankId')
if biobank_id:
result['biobankId'] = to_client_biobank_id(biobank_id)
date_of_birth = result.get('dateOfBirth')
if date_of_birth:
result['ageRange'] = get_bucketed_age(date_of_birth,
clock.CLOCK.now())
else:
result['ageRange'] = UNSET
format_json_hpo(result, self.hpo_dao, 'hpoId')
_initialize_field_type_sets()
for fieldname in _DATE_FIELDS:
format_json_date(result, fieldname)
for fieldname in _CODE_FIELDS:
format_json_code(result, self.code_dao, fieldname)
for fieldname in _ENUM_FIELDS:
format_json_enum(result, fieldname)
if (model.withdrawalStatus == WithdrawalStatus.NO_USE
or model.suspensionStatus == SuspensionStatus.NO_CONTACT):
result['recontactMethod'] = 'NO_CONTACT'
# Strip None values.
result = {k: v for k, v in result.iteritems() if v is not None}
return result
def to_client_json(self, model):
client_json = {
'participantId': to_client_participant_id(model.participantId),
'hpoId': model.hpoId,
'awardee': model.hpoId,
'organization': model.organizationId,
'siteId': model.siteId,
'biobankId': to_client_biobank_id(model.biobankId),
'lastModified': model.lastModified.isoformat(),
'signUpTime': model.signUpTime.isoformat(),
'providerLink': json.loads(model.providerLink),
'withdrawalStatus': model.withdrawalStatus,
'withdrawalTime': model.withdrawalTime,
'suspensionStatus': model.suspensionStatus,
'suspensionTime': model.suspensionTime
}
format_json_hpo(client_json, self.hpo_dao, 'hpoId'),
format_json_org(client_json, self.organization_dao, 'organization'),
format_json_site(client_json, self.site_dao, 'site'),
format_json_enum(client_json, 'withdrawalStatus')
format_json_enum(client_json, 'suspensionStatus')
format_json_date(client_json, 'withdrawalTime')
format_json_date(client_json, 'suspensionTime')
client_json['awardee'] = client_json['hpoId']
if 'siteId' in client_json:
del client_json['siteId']
return client_json
def __dict_to_mayo_xml__(self, order):
root = etree.fromstring(self.payload_template)
# A super lame way to do this, sorry ? :-)
root[0][0].text = order['order']['collected']
root[0][1].text = str(self.account)
root[0][2].text = order['order']['number']
root[0][3][0].text = order['order']['patient']['medical_record_number']
root[0][3][1].text = order['order']['patient']['first_name']
root[0][3][2].text = order['order']['patient']['last_name']
root[0][3][3].text = order['order']['patient']['middle_name']
root[0][3][4].text = order['order']['patient']['birth_date']
root[0][3][5].text = order['order']['patient']['gender']
root[0][3][6].text = order['order']['patient']['address1']
root[0][3][7].text = order['order']['patient']['address2']
root[0][3][8].text = order['order']['patient']['city']
root[0][3][9].text = order['order']['patient']['state']
root[0][3][10].text = order['order']['patient']['postal_code']
root[0][3][11].text = order['order']['patient']['phone']
root[0][3][12].text = order['order']['patient']['account_number']
root[0][3][13].text = format_json_enum(order['order']['patient'],
'race')
root[0][3][14].text = order['order']['patient']['ethnic_group']
root[0][4][0].text = order['order']['physician']['name']
root[0][4][1].text = order['order']['physician']['phone']
root[0][4][2].text = order['order']['physician']['npi']
root[0][5].text = order['order']['report_notes']
root[0][6][0][0].text = order['order']['tests']['test']['code']
root[0][6][0][1].text = order['order']['tests']['test']['name']
root[0][6][0][2].text = order['order']['tests']['test']['comments']
root[0][7].text = order['order']['comments']
request = etree.tostring(root)
return request
def to_client_json(self, model):
client_json = {
'participantId': to_client_participant_id(model.participantId),
'biobankId': to_client_biobank_id(model.biobankId),
'lastModified': model.lastModified.isoformat(),
'signUpTime': model.signUpTime.isoformat(),
'providerLink': json.loads(model.providerLink),
'withdrawalStatus': model.withdrawalStatus,
'withdrawalTime': model.withdrawalTime,
'suspensionStatus': model.suspensionStatus,
'suspensionTime': model.suspensionTime
}
format_json_enum(client_json, 'withdrawalStatus')
format_json_enum(client_json, 'suspensionStatus')
format_json_date(client_json, 'withdrawalTime')
format_json_date(client_json, 'suspensionTime')
return client_json
def to_client_json(self, model, for_update=False):
if for_update:
result = dict()
reduced_model = model['orders']['order']
result['biobankStatus'] = reduced_model['status']
result['barcode'] = reduced_model['reference_number']
result['received'] = reduced_model['received']
result['biobankOrderId'] = reduced_model['number']
result['biobankTrackingId'] = reduced_model['patient'][
'medical_record_number']
else:
result = model.asdict()
result['orderStatus'] = format_json_enum(result, 'orderStatus')
result['shipmentStatus'] = format_json_enum(
result, 'shipmentStatus')
format_json_code(result, self.code_dao, 'stateId')
result['state'] = result['state'][-2:] # Get the abbreviation
del result['id'] # PK for model
result = {k: v for k, v in result.items() if v is not None}
if 'participantId' in result:
result['participantId'] = to_client_participant_id(
result['participantId'])
return result
def to_client_json(self, model):
result = model.asdict()
# Participants that withdrew more than 48 hours ago should have fields other than
# WITHDRAWN_PARTICIPANT_FIELDS cleared.
if (model.withdrawalStatus == WithdrawalStatus.NO_USE and
(model.withdrawalTime is None or model.withdrawalTime <
clock.CLOCK.now() - WITHDRAWN_PARTICIPANT_VISIBILITY_TIME)):
result = {k: result.get(k) for k in WITHDRAWN_PARTICIPANT_FIELDS}
elif model.withdrawalStatus != WithdrawalStatus.NO_USE and \
model.suspensionStatus == SuspensionStatus.NO_CONTACT:
for i in SUSPENDED_PARTICIPANT_FIELDS:
result[i] = UNSET
result['participantId'] = to_client_participant_id(model.participantId)
biobank_id = result.get('biobankId')
if biobank_id:
result['biobankId'] = to_client_biobank_id(biobank_id)
date_of_birth = result.get('dateOfBirth')
if date_of_birth:
result['ageRange'] = get_bucketed_age(date_of_birth,
clock.CLOCK.now())
else:
result['ageRange'] = UNSET
if result.get('primaryLanguage') is None:
result['primaryLanguage'] = UNSET
if 'organizationId' in result:
result['organization'] = result['organizationId']
del result['organizationId']
format_json_org(result, self.organization_dao, 'organization')
if result.get('genderIdentityId'):
del result[
'genderIdentityId'] # deprecated in favor of genderIdentity
# Note: leaving for future use if we go back to using a relationship to PatientStatus table.
# def format_patient_status_record(status_obj):
# status_dict = self.patient_status_dao.to_client_json(status_obj)
# return {
# 'organization': status_dict['organization'],
# 'status': status_dict['patient_status'],
# }
# result['patientStatus'] = map(format_patient_status_record, model.patientStatus)
result['patientStatus'] = model.patientStatus
format_json_hpo(result, self.hpo_dao, 'hpoId')
result['awardee'] = result['hpoId']
_initialize_field_type_sets()
for fieldname in _DATE_FIELDS:
format_json_date(result, fieldname)
for fieldname in _CODE_FIELDS:
format_json_code(result, self.code_dao, fieldname)
for fieldname in _ENUM_FIELDS:
format_json_enum(result, fieldname)
for fieldname in _SITE_FIELDS:
format_json_site(result, self.site_dao, fieldname)
if (model.withdrawalStatus == WithdrawalStatus.NO_USE
or model.suspensionStatus == SuspensionStatus.NO_CONTACT):
result['recontactMethod'] = 'NO_CONTACT'
# Strip None values.
result = {k: v for k, v in result.iteritems() if v is not None}
return result