def geocode_acc(results):
with open(os.path.join('./tests/resources', '10_acc.txt'), 'a') as datafile:
input_num = 0
output_num = 0
distance_list = []
for paper in results:
pmid = str(paper['MedlineCitation']['PMID'])
datafile.write('\nPMID: ' + pmid + '\n')
author_list = paper['MedlineCitation']['Article']['AuthorList']
for author in author_list:
for a in author['AffiliationInfo']:
if 'lat' in a: # coordinates have been found manually
formatted_address = format_address_10(a['Affiliation']) # change format_address
if formatted_address:
datafile.write('\tInput address: ' + a['Affiliation'] + '\n')
place = geocode.get_location(formatted_address)
datafile.write('\t\tFormatted address: ' + formatted_address + '\n')
if place:
input_num += 1
datafile.write('\tOutput address: ' + place['name'] + '\n')
datafile.write('\tResult coordinates: ' + str(place['geometry']['location']) + '\n')
distance = getDistanceFromLatLonInKm(
place['geometry']['location']['lat'],
place['geometry']['location']['lng'],
a['lat'],
a['lng'])
distance_list.append(distance)
if distance < 5:
output_num += 1
datafile.write('\t\tDistance from target: ' + str(distance) + ' km\n')
else:
datafile.write('\t\tOutput address: NONE' + '\n')
datafile.write(str(distance_list) + '\n\n')
datafile.write('\nMEAN DISTANCE: ' + str(statistics.mean(distance_list)) + ' km\n')
datafile.write('\n1 STANDARD DEVIATION: ' + str(statistics.stdev(distance_list)) + ' km\n')
if input_num > 0:
datafile.write('\nSUCCESS RATE: ' + str(output_num / input_num * 100) + '%\n')
datafile.close()
def geocode_hit(results):
with open(os.path.join('./tests/resources', '10_hit.txt'), 'a') as datafile:
input_num = 0
output_num = 0
alphanumeric_addresses = set() # do not analyse duplicate addresses
for paper in results:
pmid = str(paper['MedlineCitation']['PMID'])
datafile.write('\nPMID: ' + pmid + '\n')
author_list = paper['MedlineCitation']['Article']['AuthorList']
for author in author_list:
for place in author['AffiliationInfo']:
individual_addresses = place['Affiliation'].split(';')
for f in individual_addresses:
formatted_address = format_address_10(f) # change format_address
alphanumeric = re.sub('[\W]', '', formatted_address).upper()
if alphanumeric != '' and alphanumeric not in alphanumeric_addresses and formatted_address:
alphanumeric_addresses.add(alphanumeric)
datafile.write('\tInput address: ' + f + '\n')
input_num += 1
place = geocode.get_location(formatted_address)
datafile.write('\tFormatted address: ' + formatted_address + '\n')
if place:
datafile.write('\tOutput address: ' + place['name'] + '\n')
output_num += 1
else:
datafile.write('\tOutput address: NONE' + '\n')
if input_num > 0:
datafile.write('\nSUCCESS RATE: ' + str(output_num / input_num * 100) + '%\n')
datafile.close()
def doublecheck():
place = """TN, USA"""
print(geocode.get_location(place))
