def test_export_data_event_bad_extension(self):
fname_name = "testfile_TestSimGroupView.blah"
expected_fname = fname_name + ".csv"
with temp_fname(fname_name) as fname_path:
with temp_fname(expected_fname):
model_view = self._get_model_view()
model_view.do_export_data(fname_name)
found = os.listdir(os.path.dirname(fname_path))
self.assertNotIn(fname_name, found)
self.assertIn(expected_fname, found)
def test_export_data_event(self):
fname_name = "testfile_TestSimGroupView.csv"
with temp_fname(fname_name) as fname_path:
model_view = self._get_model_view()
model_view.do_export_data(fname_name)
found = os.listdir(os.path.dirname(fname_path))
self.assertIn(fname_name, found)
def test_save_task_no_ext(self):
filename_no_ext = "testing_tempfile_kromatography3"
task = self.task
with temp_fname(filename_no_ext):
task.save_project_as(filename_no_ext)
self.assertFalse(isfile(filename_no_ext))
correct_file = filename_no_ext + KROM_EXTENSION
self.assertTrue(isfile(correct_file))
attempt_remove_file(correct_file)
def test_plot_export(self):
data = XYData(name="test",
x_data=arange(20),
y_data=arange(20),
x_metadata={"units": "min"},
y_metadata={"units": "AU"})
filepath = "test.png"
with temp_fname(filepath):
data.mpl_show(filepath=filepath)
self.assertIn(filepath, listdir("."))
def write_sim_to_input_file_and_check(self, sim):
cadet_input = build_cadet_input(sim)
output_file = "test.h5"
with temp_fname(output_file):
write_to_h5(output_file,
cadet_input,
root='/input',
overwrite=True)
self.assertTrue(exists(output_file))
with h5py.File(F1NAME, "r") as h5:
self.assertEqual(h5.keys(), [u"input"])
expected = [
u'CHROMATOGRAPHY_TYPE', u'discretization', u'model',
u'sensitivity', u'solver'
]
self.assertEqual(set(h5[u"input"].keys()), set(expected))
data_found = read_from_h5(output_file)
return data_found
def test_export_data_event(self):
fname_seed = "testfile_TestBindingModelOptimizerView.csv"
with temp_fname(fname_seed) as fname:
model_view = self._get_model_view()
model_view.do_export_data(fname)
self.assertIn(fname_seed, os.listdir(os.path.dirname(fname)))
def test_save_task(self):
filename = "testing_tempfile_kromatography" + KROM_EXTENSION
task = self.task
with temp_fname(filename):
task.save_project_as(filename)
self.assertTrue(isfile(filename))
def test_plot_export_to_jpeg(self):
data = XYData(name="test", x_data=arange(20), y_data=arange(20))
filepath = "test.jpg"
with temp_fname(filepath):
data.mpl_show(filepath=filepath)
self.assertIn(filepath, listdir("."))