def test_scan_label_quality(self):
tmp_dir = tempfile.mkdtemp()
repository = XnatRepo(
project_id=self.project,
server=SERVER, cache_dir=tmp_dir)
tree = repository.tree(
subject_ids=[self.SUBJECT],
visit_ids=[self.VISIT])
for accepted, expected in (
(None, '1unusable'),
((None, 'questionable', 'usable'), '2unlabelled'),
(('questionable', 'usable'), '3questionable'),
('usable', '4usable')):
inpt = InputFilesets('dummy', order=0, valid_formats=text_format,
acceptable_quality=accepted)
matched = inpt.match(tree).item(subject_id=self.SUBJECT,
visit_id=self.VISIT)
self.assertEqual(matched.name, expected)
def test_cache_on_path_access(self):
tmp_dir = tempfile.mkdtemp()
repository = XnatRepo(
project_id=self.project,
server=SERVER, cache_dir=tmp_dir)
tree = repository.tree(
subject_ids=[self.SUBJECT],
visit_ids=[self.VISIT])
# Get a fileset
fileset = list(list(list(tree.subjects)[0].sessions)[0].filesets)[0]
fileset.format = text_format
self.assertEqual(fileset._path, None)
target_path = op.join(
tmp_dir, self.project,
'{}_{}'.format(self.project, self.SUBJECT),
'{}_{}_{}'.format(self.project, self.SUBJECT, self.VISIT),
fileset.basename, fileset.fname)
# This should implicitly download the fileset
self.assertEqual(fileset.path, target_path)
with open(target_path) as f:
self.assertEqual(f.read(),
self.INPUT_FILESETS[fileset.basename])