def processResults(resultsdict, searchresults):
try:
if isinstance(resultsdict["IdList"]["Id"], basestring):
resultsdict["IdList"]["Id"] = [resultsdict["IdList"]["Id"]]
for res in resultsdict["IdList"]["Id"]:
if res not in searchresults.keys():
searchresults[res] = {}
searchresults[res]["id"] = res
searchresults[res]["grade"] = 0.0
searchresults[res]["strength"] = 0.0
searchresults[res]["meshdistance"] = 0.0
title, abstract, date, meshterms, pubtypes = articledata.getData(
res)
searchresults[res]["title"] = title
searchresults[res]["abstract"] = abstract
searchresults[res]["date"] = date
searchresults[res]["pubtypes"] = pubtypes
searchresults[res]["meshterms"] = meshterms
searchresults[res]["keywords"] = []
except TypeError:
print "TypeError"
print "Likely cause: no query results"
print "Number of results: " + resultsdict["Count"]
except KeyError:
print "Keyerror"
print "Likely cause: only one result"
return searchresults
def processResults(resultsdict, searchresults):
try:
if isinstance(resultsdict["IdList"]["Id"], basestring):
resultsdict["IdList"]["Id"] = [resultsdict["IdList"]["Id"]]
for res in resultsdict["IdList"]["Id"]:
if res not in searchresults.keys():
searchresults[res] = {}
searchresults[res]["id"] = res
searchresults[res]["grade"] = 0.0
searchresults[res]["strength"] = 0.0
searchresults[res]["meshdistance"] = 0.0
title, abstract, date, meshterms, pubtypes = articledata.getData(res)
searchresults[res]["title"] = title
searchresults[res]["abstract"] = abstract
searchresults[res]["date"] = date
searchresults[res]["pubtypes"] = pubtypes
searchresults[res]["meshterms"] = meshterms
searchresults[res]["keywords"] = []
except TypeError:
print "TypeError"
print "Likely cause: no query results"
print "Number of results: " + resultsdict["Count"]
except KeyError:
print "Keyerror"
print "Likely cause: only one result"
return searchresults
# If there is only one result, PubMed will return it as a string
# rather than a list. In this case, convert it to a list with one element
try:
if isinstance(resultsdict["IdList"]["Id"], basestring):
resultsdict["IdList"]["Id"] = [resultsdict["IdList"]["Id"]]
# initialize results dictionary and look up article data
for res in resultsdict["IdList"]["Id"]:
if res not in searchresults.keys():
searchresults[res] = {}
searchresults[res]["id"] = res
searchresults[res]["grade"] = 0.0
searchresults[res]["strength"] = 0.0
searchresults[res]["meshdistance"] = 0.0
title, abstract, date, meshterms, pubtypes = articledata.getData(res)
searchresults[res]["title"] = title
searchresults[res]["abstract"] = abstract
searchresults[res]["date"] = date
searchresults[res]["pubtypes"] = pubtypes
searchresults[res]["meshterms"] = meshterms
searchresults[res]["keywords"] = []
except TypeError:
print "Query 1 TypeError"
print "Likely cause: no query results"
print "Number of results: " + resultsdict["Count"]
# QUERY 2
# perform query
resp, content = h.request(baseURL + "esearch.fcgi?db=pubmed&retmode=xml&sort=relevance&retmax=100&term=" + query2.replace(" ", "+"))