def signup():
"""Register a new user
Returns
-------
json
Info about the user
"""
if current_app.iniconfig.getboolean("askomics",
"disable_account_creation"):
return jsonify({
'error': True,
'errorMessage': "Account creation is disabled",
'user': {}
}), 500
user = {}
data = request.get_json()
local_auth = LocalAuth(current_app, session)
local_auth.check_inputs(data)
if not local_auth.get_error():
user = local_auth.persist_user(data)
local_auth.create_user_directories(user['id'], user['username'])
session['user'] = user
return jsonify({
'error': local_auth.get_error(),
'errorMessage': local_auth.get_error_message(),
'user': user
})
def main(self):
"""Insert the user and the eventualy galaxy account"""
# Inseret user in database
inputs = {
"fname": self.args.first_name,
"lname": self.args.last_name,
"username": self.args.username,
"email": self.args.email,
"password": self.args.password,
"apikey": self.args.api_key
}
local_auth = LocalAuth(self.application, self.session)
if local_auth.get_number_of_users() > 0:
self.application.logger.error(
"Database is not empty, user {} will not be created".format(
self.args.username))
return
self.application.logger.info("Create user {}".format(
self.args.username))
self.user = local_auth.persist_user(inputs)
self.session["user"] = self.user
local_auth.create_user_directories(self.user["id"],
self.user["username"])
# insert Galaxy account if set
if self.args.galaxy_url and self.args.galaxy_apikey:
result = local_auth.add_galaxy_account(self.user,
self.args.galaxy_url,
self.args.galaxy_apikey)
self.user = result["user"]
def test_persist_user(self):
self.tps.clean_up()
local_auth = LocalAuth(self.settings, self.request.session)
local_auth.persist_user('jdoe', '*****@*****.**', 'jdoe')
local_auth.persist_user('jsmith', '*****@*****.**', 'jsmith')
local_auth.set_auth_type('ldap')
local_auth.persist_user('ldap_jdoe', '*****@*****.**')
assert self.tps.test_row_presence('users', 'username, email, password', ('ldap_jdoe', '*****@*****.**', None))
assert self.tps.test_row_presence('users', 'username, email', ('jdoe', '*****@*****.**'))
assert self.tps.test_row_presence('users', 'username, email', ('jsmith', '*****@*****.**'))
def create_user(self, username):
"""Summary
Parameters
----------
username : TYPE
Description
Returns
-------
TYPE
Description
"""
galaxy = None
if username == "jdoe":
galaxy = {"url": "http://*****:*****@askomics.org"
if username == "jdoe" else "*****@*****.**",
"apikey": "0000000001" if username == "jdoe" else "0000000002",
"galaxy": None,
"quota": 0 if username == "jdoe" else 0,
}
auth = LocalAuth(self.app, self.session)
user = auth.persist_user(uinfo)
if galaxy:
self.session["user"] = user
user = auth.add_galaxy_account(user, galaxy["url"],
galaxy["apikey"])["user"]
self.session = {}
auth.create_user_directories(user["id"], user["username"])
return user
def test_persist_user(self):
self.tps.clean_up()
local_auth = LocalAuth(self.settings, self.request.session)
local_auth.persist_user('jdoe', '*****@*****.**', 'jdoe')
local_auth.persist_user('jsmith', '*****@*****.**', 'jsmith')
local_auth.set_auth_type('ldap')
local_auth.persist_user('ldap_jdoe', '*****@*****.**')
assert self.tps.test_row_presence(
'users', 'username, email, password',
('ldap_jdoe', '*****@*****.**', None))
assert self.tps.test_row_presence('users', 'username, email',
('jdoe', '*****@*****.**'))
assert self.tps.test_row_presence('users', 'username, email',
('jsmith', '*****@*****.**'))