def test_table_no_header(self):
t = Table(('Key', 'Value'))
t.add_row(Key="Employee name", Value="John Doe")
self.assertEqual(
t.html(), "<table>\n"
"<tr><th>Key</th><th>Value</th></tr>\n"
"<tr><td>Employee name</td><td>John Doe</td></tr>\n"
"</table>")
t.no_header()
self.assertEqual(
t.html(), "<table>\n"
"<tr><td>Employee name</td><td>John Doe</td></tr>\n"
"</table>")
toc.add(toc_list)
# Files
files_info = report.add_section("Stats files")
stats_files = "Statistics: %s" % Link(
"[TSV]", os.path.relpath(stats_file, os.path.dirname(out_file)))
if xlsx_file is not None:
stats_files += " | %s" % Link(
"[XLSX]", os.path.relpath(xlsx_file, os.path.dirname(out_file)))
files_info.add(stats_files)
toc_list.add_item(Link(files_info.title, files_info))
# General info
general_info = report.add_section("General info", name="general_info")
tbl = Table(columns=('name', 'value'))
tbl.no_header()
data_items = (('Total #reads', 'total_reads'), ('Total assigned #reads',
'total_assigned_reads'),
('Total #barcodes', 'total_barcodes'), ('Assigned #barcodes',
'assigned_barcodes'))
for item in data_items:
name, key = item
tbl.add_row(name=name, value=data[key])
general_info.add(tbl)
# Reads at each stage
cols = ['Nreads', 'Nreads_filtered', 'Nreads_trimmed']
if contaminant_filtered:
cols.append('Nreads_contaminant_filtered')
plot_filen = os.path.join(out_dir, "reads_per_stage.png")
reads_per_stage = \
