def test_abspath_cp_url(local_v6_txt, url_test_path) -> "AutoURI":
"""Test copying local_v6_txt to the following destination storages:
url_test_path: local -> url
This will fail as intended since URL is read-only.
"""
u = AbsPath(local_v6_txt)
basename = os.path.basename(local_v6_txt)
for test_path in (url_test_path, ):
u_dest = AutoURI(os.path.join(test_path, "test_abspath_cp", basename))
with pytest.raises(ReadOnlyStorageError):
_, ret = u.cp(u_dest, return_flag=True)
def test_abspath_md5_from_file(local_v6_txt, v6_txt_md5_hash):
u_md5 = AbsPath(local_v6_txt + URIBase.MD5_FILE_EXT)
if u_md5.exists:
u_md5.rm()
assert not u_md5.exists
u = AbsPath(local_v6_txt)
assert u.md5_from_file is None
u.get_metadata(make_md5_file=True)
assert u_md5.exists
assert u.md5_from_file == v6_txt_md5_hash
u_md5.rm()
assert not u_md5.exists
def test_abspath_rm(local_test_path):
u = AbsPath(local_test_path + "/test_abspath_rm.tmp")
assert not u.exists
u.write("")
assert u.exists
u.rm()
assert not u.exists
# this will be tested more with multiple threads in test_race_cond.py
assert not u.exists
u.write("", no_lock=True)
assert u.exists
u.rm()
assert not u.exists
def test_abspath_find_all_files(local_test_path):
"""Make a directory structure with empty files and an empty directory.
Check if find_all_files() returns correct file (not sub-directory) paths.
Also check if find_all_files() does not return an empty sub-directory.
"""
prefix = os.path.join(local_test_path, "test_abspath_find_all_files")
all_files = make_files_in_dir(prefix, make_local_empty_dir_d_a=True)
empty_sub_dir = os.path.join(prefix, "d", "a")
assert os.path.exists(empty_sub_dir) and os.path.isdir(empty_sub_dir)
all_files_found = AbsPath(prefix).find_all_files()
assert sorted(all_files_found) == sorted(all_files)
for file in all_files:
assert AbsPath(file).exists
assert file.rstrip("/") != empty_sub_dir.rstrip("/")
def test_localize_self_ref(
local_test_path,
gcs_j1_json_self_ref,
gcs_v41_json_self_ref,
gcs_v421_tsv_self_ref,
gcs_v5_csv_self_ref,
gcs_v6_txt_self_ref,
) -> Tuple[str, bool]:
"""Test detection of direct/indirect self reference
while localizing GCS files on local storage.
This is not only for detecting self references but also for any deep recursion
beyond the depth limit (10 by default)
Indirect self referencing in GCS files suffixed with _self_ref:
v1.json -> v421.tsv -> v1.json -> ...
"""
loc_prefix = os.path.join(local_test_path, "test_localize_self_ref")
# localization from remote storages
for j1_json in (gcs_j1_json_self_ref, ):
u_j1_json = AutoURI(j1_json)
loc_prefix_ = loc_prefix + u_j1_json.__class__.get_loc_suffix()
with pytest.raises(AutoURIRecursionError):
loc_uri, localized = AbsPath.localize(u_j1_json,
recursive=True,
loc_prefix=loc_prefix_)
def test_abspath_get_mapped_url(local_v6_txt):
u = AbsPath(local_v6_txt)
dirname = os.path.dirname(local_v6_txt)
basename = os.path.basename(local_v6_txt)
url_prefix = "http://my.test.com"
AbsPath.init_abspath(map_path_to_url={dirname: url_prefix})
assert u.get_mapped_url() == os.path.join(url_prefix, basename)
AbsPath.init_abspath(map_path_to_url=dict())
assert u.get_mapped_url() is None
def test_abspath_get_metadata(local_v6_txt, v6_txt_size, v6_txt_md5_hash):
u = AbsPath(local_v6_txt)
m1 = u.get_metadata()
assert m1.md5 == v6_txt_md5_hash
assert m1.size == v6_txt_size
m2 = u.get_metadata(skip_md5=True)
assert m2.md5 is None
assert m2.size == v6_txt_size
u_md5 = AbsPath(local_v6_txt + ".md5")
if u_md5.exists:
u_md5.rm()
m3 = u.get_metadata(make_md5_file=True)
assert m3.md5 == v6_txt_md5_hash
assert m3.size == v6_txt_size
assert u_md5.exists
assert u_md5.read() == v6_txt_md5_hash
def test_abspath_mtime(local_v6_txt):
u = AbsPath(local_v6_txt + ".tmp")
u.write("temp file for testing")
now = time.time()
assert now - 10 < u.mtime < now + 10
u.rm()
assert not u.exists
def test_abspath_rmdir(local_test_path):
"""Make a directory structure with empty files and an empty directory.
Check if rmdir() deletes the root directory itself including
all empty files and empty directory on given $prefix.
"""
prefix = os.path.join(local_test_path, "test_abspath_rmdir")
all_files = make_files_in_dir(prefix, make_local_empty_dir_d_a=True)
empty_sub_dir = os.path.join(prefix, "d", "a")
assert os.path.exists(empty_sub_dir) and os.path.isdir(empty_sub_dir)
# test rmdir(dry_run=True)
AbsPath(prefix).rmdir(dry_run=True)
for file in all_files:
assert AbsPath(file).exists
# test rmdir(dry_run=False)
AbsPath(prefix).rmdir(dry_run=False)
for file in all_files:
assert not AbsPath(file).exists
assert not os.path.exists(empty_sub_dir)
assert not os.path.exists(prefix)
def test_localize_mixed(
local_test_path,
mixed_j1_json,
mixed_v41_json,
mixed_v421_tsv,
mixed_v5_csv,
mixed_v6_txt,
) -> Tuple[str, bool]:
"""Test recursive localization of files on mixed storages
Target is local storage.
"""
loc_prefix = os.path.join(local_test_path, "test_localize_mixed")
# localization from remote storages
for j1_json in (mixed_j1_json, ):
u_j1_json = AutoURI(j1_json)
loc_prefix_ = loc_prefix + u_j1_json.__class__.get_loc_suffix()
loc_uri, localized = AbsPath.localize(u_j1_json,
recursive=True,
return_flag=True,
loc_prefix=loc_prefix_)
# check if all URIs defeind in localized JSON file exist
recurse_raise_if_uri_not_exist(loc_uri)
def test_abspath_size(local_v6_txt, v6_txt_size):
assert AbsPath(local_v6_txt).size == v6_txt_size
def test_abspath_exists(local_v6_txt):
assert AbsPath(local_v6_txt).exists
assert not AbsPath(local_v6_txt + ".should-not-be-here").exists
assert not AbsPath("/hey/this/should/not/be/here.txt").exists
def test_abspath_mkdirname(local_test_path):
f = os.path.join(local_test_path, "test_abspath_mkdirname", "tmp.txt")
AbsPath(f).mkdir_dirname()
assert os.path.exists(os.path.dirname(f))
def test_abspath_basename_wo_ext(path) -> str:
assert (AbsPath(path).basename_wo_ext == os.path.splitext(
os.path.basename(os.path.expanduser(path)))[0])
def test_abspath_ext(path) -> str:
assert AbsPath(path).ext == os.path.splitext(os.path.expanduser(path))[1]
def test_abspath_read(local_v6_txt):
u = AbsPath(local_v6_txt)
assert u.read() == v6_txt_contents()
assert u.read(byte=True) == v6_txt_contents().encode()
def test_abspath_is_valid(path) -> bool:
"""Also tests AutoURI auto-conversion since it's based on is_valid property
"""
expected = os.path.isabs(os.path.expanduser(path))
assert AbsPath(path).is_valid == expected
assert not expected or type(AutoURI(path)) == AbsPath
def test_abspath_localize(
local_test_path,
local_j1_json,
local_v41_json,
local_v421_tsv,
local_v5_csv,
local_v6_txt,
s3_j1_json,
s3_v41_json,
s3_v421_tsv,
s3_v5_csv,
s3_v6_txt,
gcs_j1_json,
gcs_v41_json,
gcs_v421_tsv,
gcs_v5_csv,
gcs_v6_txt,
url_j1_json,
url_v41_json,
url_v421_tsv,
url_v5_csv,
url_v6_txt,
) -> Tuple[str, bool]:
"""Recursive localization is supported for the following file extensions:
.json:
Files defined only in values (not keys) can be recursively localized.
.tsv/.csv:
Files defined in all values can be recursively localized.
This function will test localizing j1.json file on each remote storage.
This JSON file has file paths including .tsv and .csv, which also include
other files in its contents.
Therefore, when the recursive flag is on, all files in these JSON, TSV, CSV
files should be localized recursively with correct file names
(controlled by cls.loc_prefix and cls.loc_suffix).
Filenaming for (recursive) localization:
cls.loc_prefix + remote_file_path_without_scheme + cls.loc_suffix (for recursvely only)
For example,
s3://test-bucket/j1.json has some file paths on s3://.
With recursive localization, all these files must be localized on /tmp/user/loc_prefix/ with
a correct directory structure (keeping original structure on source: i.e. bucket name, path)
and the name of the JSON file should be j1.local.json since contents of this file should be
modified to point to localized files in it. This is recursively done for all files in it too.
Without recursive localization, autouri doesn't look inside that JSON file and just localize
the file itself alone on /tmp/user/loc_prefix/ while keeping the same filename j1.local.json.
Test localizing on a local storage from the following remote storages:
local_test_path: local -> local
s3_test_path: s3 -> local
gcs_test_path: gcs -> local
url_test_path: url -> local
Parameters to be tested:
make_md5_file:
Make md5 file on destination only when it's REQUIRED.
It's required only if we need to compare md5 hash of source and target.
This is already tested cp and it's actually needed for local storage.
Cloud URIs will provide md5 hash info in their metadata so md5 file
is not required and hence will not be created even with this flag on.
recursive:
j1.json
"""
loc_prefix = os.path.join(local_test_path, "test_abspath_localize")
for j1_json in (local_j1_json, ):
# localization from local storage
u_j1_json = AutoURI(j1_json)
loc_prefix_ = loc_prefix + u_j1_json.__class__.get_loc_suffix()
# for localization both with or without recursive
# nothing should be localized actually
# since they are already on a local storage
# so loc_prefix directory itself shouldn't be created
loc_uri, localized = AbsPath.localize(u_j1_json,
recursive=False,
return_flag=True,
loc_prefix=loc_prefix_)
assert loc_uri == u_j1_json.uri and not localized
assert not os.path.exists(loc_prefix)
loc_uri, localized = AbsPath.localize(u_j1_json,
recursive=True,
return_flag=True,
loc_prefix=loc_prefix_)
assert loc_uri == u_j1_json.uri and not localized
assert not os.path.exists(loc_prefix)
# check if all URIs defeind in localized JSON file exist
recurse_raise_if_uri_not_exist(loc_uri)
# localization from remote storages
for j1_json in (gcs_j1_json, s3_j1_json, url_j1_json):
u_j1_json = AutoURI(j1_json)
loc_prefix_ = loc_prefix + u_j1_json.__class__.get_loc_suffix()
loc_uri, localized = AbsPath.localize(u_j1_json,
recursive=False,
return_flag=True,
loc_prefix=loc_prefix_)
assert loc_uri == os.path.join(loc_prefix_, u_j1_json.loc_dirname,
u_j1_json.basename)
assert localized and os.path.exists(loc_uri)
loc_uri, localized = AbsPath.localize(u_j1_json,
recursive=True,
return_flag=True,
loc_prefix=loc_prefix_)
assert loc_uri == os.path.join(
loc_prefix_,
u_j1_json.loc_dirname,
u_j1_json.basename_wo_ext + AbsPath.get_loc_suffix() +
u_j1_json.ext,
)
assert localized and os.path.exists(loc_uri)
# check if all URIs defeind in localized JSON file exist
recurse_raise_if_uri_not_exist(loc_uri)
def test_abspath_dirname_wo_scheme(path) -> str:
assert AbsPath(path).dirname_wo_scheme == os.path.dirname(
os.path.expanduser(path))
def test_abspath_write_no_permission():
u = AbsPath("/test-permission-denied/x.tmp")
with pytest.raises(PermissionError):
u.write("test")
def test_abspath_get_loc_prefix() -> str:
test_loc_prefix = "test_abspath_get_loc_prefix"
AbsPath.init_abspath(loc_prefix=test_loc_prefix)
assert AbsPath.get_loc_prefix() == test_loc_prefix
AbsPath.init_abspath(loc_prefix="")
assert AbsPath.get_loc_prefix() == ""
def test_abspath_get_schemes() -> Tuple[str, ...]:
assert AbsPath.get_schemes() == tuple()
def test_abspath_get_path_sep() -> str:
assert AbsPath.get_path_sep() == os.path.sep
def test_abspath_get_abspath_if_exists():
# write a local file on CWD.
test_local_file_abspath = os.path.join(os.getcwd(), "test.txt")
u = AbsPath(test_local_file_abspath)
if u.exists:
u.rm()
# if it doesn't exist
assert AbsPath.get_abspath_if_exists("test.txt") == "test.txt"
assert AbsPath.get_abspath_if_exists(AutoURI("test.txt")) == "test.txt"
u.write("hello-world")
# if it exists
assert AbsPath.get_abspath_if_exists("test.txt") == test_local_file_abspath
assert AbsPath.get_abspath_if_exists(
AutoURI("test.txt")) == test_local_file_abspath
assert AbsPath.get_abspath_if_exists(
"tttttttttest.txt") == "tttttttttest.txt"
assert (AbsPath.get_abspath_if_exists(
AutoURI("tttttttttest.txt")) == "tttttttttest.txt")
assert (AbsPath.get_abspath_if_exists("~/if-it-does-not-exist") ==
"~/if-it-does-not-exist")
assert AbsPath.get_abspath_if_exists(
"non-existing-file") == "non-existing-file"
u.rm()
def test_abspath_md5(local_v6_txt, v6_txt_md5_hash):
assert AbsPath(local_v6_txt).md5 == v6_txt_md5_hash
def test_abspath_loc_dirname(path) -> str:
assert AbsPath(path).loc_dirname == os.path.dirname(
os.path.expanduser(path)).strip(os.path.sep)
def test_abspath_uri_wo_scheme(path) -> str:
assert AbsPath(path).uri_wo_scheme == os.path.expanduser(path)
def test_abspath_basename(path) -> str:
assert AbsPath(path).basename == os.path.basename(os.path.expanduser(path))
def test_abspath_get_loc_suffix() -> str:
assert AbsPath.get_loc_suffix() == ".local"
def test_abspath_soft_link(local_test_path, local_v6_txt):
u_src = AbsPath(local_v6_txt)
f = os.path.join(local_test_path, "test_abspath_soft_link", "v6.txt")
u_target = AbsPath(f)
u_target.mkdir_dirname()
u_src.soft_link(u_target)
assert u_target.exists and u_target.read() == v6_txt_contents()
assert u_src.uri == os.path.realpath(u_target.uri)
with pytest.raises(OSError):
# file already exists
u_src.soft_link(u_target)
# no error if force
u_src.soft_link(u_target, force=True)
u_target.rm()
