def test_080_add_subfolder2_to_folder2( self ):
     """Testing adding subfolder2 to a folder2"""
     # logged in as admin_user
     name = "Subfolder2"
     description = "Subfolder2 description"
     self.add_folder( 'library_admin',
                      self.security.encode_id( library2.id ),
                      self.security.encode_id( folder2.id ),
                      name=name,
                      description=description )
     global subfolder2
     subfolder2 = get_folder( folder2.id, name, description )
     assert subfolder2 is not None, 'Problem retrieving subfolder2 from the database'
 def test_160_add_folder6_to_library6( self ):
     """Testing adding a folder to library6"""
     # Logged in as admin_user
     # Add a folder to library5
     folder = library6.root_folder
     name = "folder"
     description = "folder description"
     self.add_folder( 'library_admin',
                      self.security.encode_id( library6.id ),
                      self.security.encode_id( folder.id ),
                      name=name,
                      description=description )
     global folder6
     folder6 = get_folder( folder.id, name, description )
 def test_085_add_folder3_to_library3( self ):
     """Testing adding a folder to library3"""
     # Logged in as admin_user
     # Add a folder to library3
     folder = library3.root_folder
     name = "folder"
     description = "folder description"
     self.add_folder( 'library_admin',
                      self.security.encode_id( library3.id ),
                      self.security.encode_id( folder.id ),
                      name=name,
                      description=description )
     global folder3
     folder3 = get_folder( folder.id, name, description )
 def test_070_add_folder2_to_library2( self ):
     """Testing adding folder2 to a library2"""
     # logged in as admin_user
     root_folder = library2.root_folder
     name = "Folder2"
     description = "Folder2 description"
     self.add_folder( 'library_admin',
                      self.security.encode_id( library2.id ),
                      self.security.encode_id( root_folder.id ),
                      name=name,
                      description=description )
     global folder2
     folder2 = get_folder( root_folder.id, name, description )
     assert folder2 is not None, 'Problem retrieving folder2 from the database'
 def test_020_add_folder_to_library1( self ):
     """Testing adding a folder1 to a library1"""
     # logged in as admin_user
     root_folder = library1.root_folder
     name = "Folder1"
     description = "Folder1 description"
     self.add_folder( 'library_admin',
                      self.security.encode_id( library1.id ),
                      self.security.encode_id( root_folder.id ),
                      name=name,
                      description=description )
     global folder1
     folder1 = get_folder( root_folder.id, name, description )
     assert folder1 is not None, 'Problem retrieving folder1 from the database'
Пример #6
0
 def test_040_add_2nd_folder_to_library1(self):
     """Testing adding a 2nd folder to a library1"""
     # logged in as admin_user
     name = "folder2"
     description = "folder2 description"
     self.add_folder('library_admin',
                     self.security.encode_id(library1.id),
                     self.security.encode_id(library1.root_folder.id),
                     name=name,
                     description=description)
     global folder2
     folder2 = get_folder(library1.root_folder.id, name, description)
     assert folder2 is not None, 'Problem retrieving library folder named "%s" from the database' % name
     self.browse_library(
         cntrller='library_admin',
         library_id=self.security.encode_id(library1.id),
         strings_displayed=[folder2.name, folder2.description])
Пример #7
0
 def test_035_add_subfolder_to_folder(self):
     """Testing adding a folder to a folder"""
     # logged in as admin_user
     name = "Folder One's Subfolder"
     description = "This is the Folder One's subfolder"
     self.add_folder('library_admin',
                     self.security.encode_id(library1.id),
                     self.security.encode_id(folder1.id),
                     name=name,
                     description=description)
     global subfolder1
     subfolder1 = get_folder(folder1.id, name, description)
     assert subfolder1 is not None, 'Problem retrieving subfolder1 from the database'
     self.browse_library(cntrller='library_admin',
                         library_id=self.security.encode_id(library1.id),
                         strings_displayed=[
                             escape(subfolder1.name),
                             escape(subfolder1.description)
                         ])
Пример #8
0
 def test_120_populate_public_library2(self):
     """Testing library datasets within a library"""
     # Logged in as admin_user
     # Add a folder named Three to library2 root
     root_folder = library2.root_folder
     name = "One"
     description = "One description"
     self.add_folder('library_admin',
                     self.security.encode_id(library2.id),
                     self.security.encode_id(root_folder.id),
                     name=name,
                     description=description)
     global folder3
     folder3 = get_folder(root_folder.id, name, description)
     assert folder3 is not None, 'Problem retrieving library folder named "%s" from the database' % name
     # Upload dataset 1.bed to folder One
     filename = '1.bed'
     ldda_message = "Testing uploading %s" % filename
     self.upload_library_dataset(
         cntrller='library_admin',
         library_id=self.security.encode_id(library2.id),
         folder_id=self.security.encode_id(folder3.id),
         filename=filename,
         file_type='bed',
         dbkey='hg18',
         ldda_message=ldda_message,
         strings_displayed=['Upload files'])
     global ldda5
     ldda5 = get_latest_ldda_by_name(filename)
     assert ldda5 is not None, 'Problem retrieving LibraryDatasetDatasetAssociation ldda5 from the database'
     # Add a sub-folder named Two to folder One
     name = "Two"
     description = "Two description"
     self.add_folder('library_admin',
                     self.security.encode_id(library2.id),
                     self.security.encode_id(folder3.id),
                     name=name,
                     description=description)
     global folder4
     folder4 = get_folder(folder3.id, name, description)
     assert folder4 is not None, 'Problem retrieving library folder named "%s" from the database' % name
     # Upload dataset 2.bed to folder Two
     filename = '2.bed'
     ldda_message = "Testing uploading %s" % filename
     self.upload_library_dataset(
         cntrller='library_admin',
         library_id=self.security.encode_id(library2.id),
         folder_id=self.security.encode_id(folder4.id),
         filename=filename,
         file_type='bed',
         dbkey='hg18',
         ldda_message=ldda_message,
         strings_displayed=['Upload files'])
     global ldda6
     ldda6 = get_latest_ldda_by_name(filename)
     assert ldda6 is not None, 'Problem retrieving LibraryDatasetDatasetAssociation ldda6 from the database'
     # Add a folder named Three to library2 root
     name = "Three"
     description = "Three description"
     self.add_folder('library_admin',
                     self.security.encode_id(library2.id),
                     self.security.encode_id(root_folder.id),
                     name=name,
                     description=description)
     global folder5
     folder5 = get_folder(root_folder.id, name, description)
     assert folder5 is not None, 'Problem retrieving library folder named "%s" from the database' % name
     # Upload dataset 3.bed to library2 root folder
     filename = '3.bed'
     ldda_message = "Testing uploading %s" % filename
     self.upload_library_dataset(
         cntrller='library_admin',
         library_id=self.security.encode_id(library2.id),
         folder_id=self.security.encode_id(root_folder.id),
         filename=filename,
         file_type='bed',
         dbkey='hg18',
         ldda_message=ldda_message,
         strings_displayed=['Upload files'])
     global ldda7
     ldda7 = get_latest_ldda_by_name(filename)
     assert ldda7 is not None, 'Problem retrieving LibraryDatasetDatasetAssociation ldda7 from the database'