def test_080_add_subfolder2_to_folder2( self ):
"""Testing adding subfolder2 to a folder2"""
# logged in as admin_user
name = "Subfolder2"
description = "Subfolder2 description"
self.add_folder( 'library_admin',
self.security.encode_id( library2.id ),
self.security.encode_id( folder2.id ),
name=name,
description=description )
global subfolder2
subfolder2 = get_folder( folder2.id, name, description )
assert subfolder2 is not None, 'Problem retrieving subfolder2 from the database'
def test_160_add_folder6_to_library6( self ):
"""Testing adding a folder to library6"""
# Logged in as admin_user
# Add a folder to library5
folder = library6.root_folder
name = "folder"
description = "folder description"
self.add_folder( 'library_admin',
self.security.encode_id( library6.id ),
self.security.encode_id( folder.id ),
name=name,
description=description )
global folder6
folder6 = get_folder( folder.id, name, description )
def test_085_add_folder3_to_library3( self ):
"""Testing adding a folder to library3"""
# Logged in as admin_user
# Add a folder to library3
folder = library3.root_folder
name = "folder"
description = "folder description"
self.add_folder( 'library_admin',
self.security.encode_id( library3.id ),
self.security.encode_id( folder.id ),
name=name,
description=description )
global folder3
folder3 = get_folder( folder.id, name, description )
def test_070_add_folder2_to_library2( self ):
"""Testing adding folder2 to a library2"""
# logged in as admin_user
root_folder = library2.root_folder
name = "Folder2"
description = "Folder2 description"
self.add_folder( 'library_admin',
self.security.encode_id( library2.id ),
self.security.encode_id( root_folder.id ),
name=name,
description=description )
global folder2
folder2 = get_folder( root_folder.id, name, description )
assert folder2 is not None, 'Problem retrieving folder2 from the database'
def test_020_add_folder_to_library1( self ):
"""Testing adding a folder1 to a library1"""
# logged in as admin_user
root_folder = library1.root_folder
name = "Folder1"
description = "Folder1 description"
self.add_folder( 'library_admin',
self.security.encode_id( library1.id ),
self.security.encode_id( root_folder.id ),
name=name,
description=description )
global folder1
folder1 = get_folder( root_folder.id, name, description )
assert folder1 is not None, 'Problem retrieving folder1 from the database'
def test_040_add_2nd_folder_to_library1(self):
"""Testing adding a 2nd folder to a library1"""
# logged in as admin_user
name = "folder2"
description = "folder2 description"
self.add_folder('library_admin',
self.security.encode_id(library1.id),
self.security.encode_id(library1.root_folder.id),
name=name,
description=description)
global folder2
folder2 = get_folder(library1.root_folder.id, name, description)
assert folder2 is not None, 'Problem retrieving library folder named "%s" from the database' % name
self.browse_library(
cntrller='library_admin',
library_id=self.security.encode_id(library1.id),
strings_displayed=[folder2.name, folder2.description])
def test_035_add_subfolder_to_folder(self):
"""Testing adding a folder to a folder"""
# logged in as admin_user
name = "Folder One's Subfolder"
description = "This is the Folder One's subfolder"
self.add_folder('library_admin',
self.security.encode_id(library1.id),
self.security.encode_id(folder1.id),
name=name,
description=description)
global subfolder1
subfolder1 = get_folder(folder1.id, name, description)
assert subfolder1 is not None, 'Problem retrieving subfolder1 from the database'
self.browse_library(cntrller='library_admin',
library_id=self.security.encode_id(library1.id),
strings_displayed=[
escape(subfolder1.name),
escape(subfolder1.description)
])
def test_120_populate_public_library2(self):
"""Testing library datasets within a library"""
# Logged in as admin_user
# Add a folder named Three to library2 root
root_folder = library2.root_folder
name = "One"
description = "One description"
self.add_folder('library_admin',
self.security.encode_id(library2.id),
self.security.encode_id(root_folder.id),
name=name,
description=description)
global folder3
folder3 = get_folder(root_folder.id, name, description)
assert folder3 is not None, 'Problem retrieving library folder named "%s" from the database' % name
# Upload dataset 1.bed to folder One
filename = '1.bed'
ldda_message = "Testing uploading %s" % filename
self.upload_library_dataset(
cntrller='library_admin',
library_id=self.security.encode_id(library2.id),
folder_id=self.security.encode_id(folder3.id),
filename=filename,
file_type='bed',
dbkey='hg18',
ldda_message=ldda_message,
strings_displayed=['Upload files'])
global ldda5
ldda5 = get_latest_ldda_by_name(filename)
assert ldda5 is not None, 'Problem retrieving LibraryDatasetDatasetAssociation ldda5 from the database'
# Add a sub-folder named Two to folder One
name = "Two"
description = "Two description"
self.add_folder('library_admin',
self.security.encode_id(library2.id),
self.security.encode_id(folder3.id),
name=name,
description=description)
global folder4
folder4 = get_folder(folder3.id, name, description)
assert folder4 is not None, 'Problem retrieving library folder named "%s" from the database' % name
# Upload dataset 2.bed to folder Two
filename = '2.bed'
ldda_message = "Testing uploading %s" % filename
self.upload_library_dataset(
cntrller='library_admin',
library_id=self.security.encode_id(library2.id),
folder_id=self.security.encode_id(folder4.id),
filename=filename,
file_type='bed',
dbkey='hg18',
ldda_message=ldda_message,
strings_displayed=['Upload files'])
global ldda6
ldda6 = get_latest_ldda_by_name(filename)
assert ldda6 is not None, 'Problem retrieving LibraryDatasetDatasetAssociation ldda6 from the database'
# Add a folder named Three to library2 root
name = "Three"
description = "Three description"
self.add_folder('library_admin',
self.security.encode_id(library2.id),
self.security.encode_id(root_folder.id),
name=name,
description=description)
global folder5
folder5 = get_folder(root_folder.id, name, description)
assert folder5 is not None, 'Problem retrieving library folder named "%s" from the database' % name
# Upload dataset 3.bed to library2 root folder
filename = '3.bed'
ldda_message = "Testing uploading %s" % filename
self.upload_library_dataset(
cntrller='library_admin',
library_id=self.security.encode_id(library2.id),
folder_id=self.security.encode_id(root_folder.id),
filename=filename,
file_type='bed',
dbkey='hg18',
ldda_message=ldda_message,
strings_displayed=['Upload files'])
global ldda7
ldda7 = get_latest_ldda_by_name(filename)
assert ldda7 is not None, 'Problem retrieving LibraryDatasetDatasetAssociation ldda7 from the database'