def _defineParams(self, form):
ProtImportFiles._defineParams(self, form)
form.addParam('inputMicrographs', PointerParam, pointerClass='SetOfMicrographs',
label='Input micrographs',
help='Select the particles that you want to import coordinates.')
form.addParam('boxSize', IntParam, label='Box size')
form.addParam('scale', FloatParam,
label='Scale', default=1,
help='factor to scale coordinates')
form.addParam('invertX', BooleanParam, default=False,
label='Invert X')
form.addParam('invertY', BooleanParam, default=False,
label='Invert Y')
def _defineParams(self, form):
ProtImportFiles._defineParams(self, form)
form.addParam(
'inputMicrographs',
PointerParam,
pointerClass='SetOfMicrographs',
label='Input micrographs',
help=
'Select the micrographs for which you want to import coordinates.')
form.addParam('boxSize', IntParam, label='Box size')
form.addParam('scale',
FloatParam,
label='Scale',
default=1,
help='Factor to scale coordinates')
form.addParam('invertX', BooleanParam, default=False, label='Invert X')
form.addParam('invertY', BooleanParam, default=False, label='Invert Y')
def _validate(self):
errors = ProtImportFiles._validate(self)
# Check that files are proper EM images, only when importing from
# files and not using streaming. In the later case we could
# have partial files not completed.
if (self.importFrom == self.IMPORT_FROM_FILES
and not self.dataStreaming):
errors += self._validateImages()
return errors
def _validate(self):
errors = ProtImportFiles._validate(self)
# Check that files are proper EM images, only when importing from
# files and not using streaming. In the later case we could
# have partial files not completed.
if (self.importFrom == self.IMPORT_FROM_FILES and
not self.dataStreaming):
errors += self._validateImages()
return errors
def __init__(self, **args):
ProtImportFiles.__init__(self, **args)
def _defineParams(self, form):
ProtImportFiles._defineParams(self, form)
self._defineAcquisitionParams(form)
def __init__(self, **args):
ProtImportFiles.__init__(self, **args)
def _defineParams(self, form):
ProtImportFiles._defineParams(self, form)
self._defineAcquisitionParams(form)
def _validate(self):
errors = ProtImportFiles._validate(self)
if self.importFrom == self.IMPORT_FROM_FILES:
errors += self._validateImages()
return errors
def _defineParams(self, form):
ProtImportFiles._defineParams(self, form)
def _defineParams(self, form):
ProtImportFiles._defineParams(self, form)
def _validate(self):
errors = ProtImportFiles._validate(self)
if self.importFrom == self.IMPORT_FROM_FILES:
errors += self._validateImages()
return errors