def test_mixed_genomes_case_3(self):
g1_data = [
">A",
"# data :: fragment : name=scaffold1",
"1 2 3 4 5 6 $"
]
g2_data = [
">B",
"1 3 2 4 5 6 $"
]
bg = GRIMMWriterTestCase._populate_bg(data=g1_data + g2_data)
self.assertEqual(scj(bg), 6)
def test_linear_genomes_case_6(self):
g1_data = [
">A",
"# data :: fragment : name=scaffold1",
"1 2 3 4 5 6 $",
]
g2_data = [
">B",
"-3 -2 -1 -6 -5 -4 $"
]
bg = GRIMMWriterTestCase._populate_bg(data=g1_data + g2_data)
self.assertEqual(scj(bg), 2)
def test_mixed_genomes_case_1(self):
g1_data = [
">A",
"# data :: fragment : name=scaffold1",
"1 2 3 4 5 $",
"6 @"
]
g2_data = [
">B",
"-3 -2 -1 @",
"-6 -5 -4 $"
]
bg = GRIMMWriterTestCase._populate_bg(data=g1_data + g2_data)
self.assertEqual(scj(bg), 4)
def test_circular_genomes_case_1(self):
g1_data = [
">A",
"# data :: fragment : name=scaffold1",
"1 2 3 @",
"# data :: fragment : name=scaffold2",
"4 5 6 @"
]
g2_data = [
">B",
"1 3 -2 @",
"6 5 4 @"
]
bg = GRIMMWriterTestCase._populate_bg(data=g1_data + g2_data)
self.assertEqual(scj(bg), 12)
