def post(self, request, *args):
response = {
'id': '',
'taxon_name': '',
}
taxonomy = None
gbif_key = self.request.POST.get('gbifKey', None)
taxon_name = self.request.POST.get('taxonName', None)
taxon_group = self.request.POST.get('taxonGroup', None)
rank = self.request.POST.get('rank', None)
if gbif_key:
taxonomy = process_taxon_identifier(key=gbif_key,
fetch_parent=True,
get_vernacular=False)
elif taxon_name and rank:
taxonomy, created = Taxonomy.objects.get_or_create(
scientific_name=taxon_name,
canonical_name=taxon_name,
rank=rank)
if taxon_group:
try:
taxon_group = TaxonGroup.objects.get(name=taxon_group)
taxon_group.taxonomies.add(taxonomy)
except TaxonGroup.DoesNotExist:
pass
if taxonomy:
response['id'] = taxonomy.id
response['taxon_name'] = taxonomy.canonical_name
return Response(response)
def test_get_all_parent(self):
taxon_identifier = process_taxon_identifier(self.gbif_key)
parent = 0
while taxon_identifier.parent:
self.assertIsNotNone(taxon_identifier.parent)
parent += 1
taxon_identifier = taxon_identifier.parent
self.assertTrue(parent == 2)
def handle(self, *args, **options):
models.signals.pre_save.disconnect(
taxonomy_pre_save_handler,
)
models.signals.post_save.disconnect(
collection_post_save_handler,
)
taxonomy_gbif_keys = Taxonomy.objects.values_list(
'gbif_key',
flat=True
)
taxa = Taxon.objects.all().exclude(
gbif_id__in=taxonomy_gbif_keys
)
for taxon in taxa:
print('Migrate %s' % taxon.scientific_name)
taxon_identifier = process_taxon_identifier(taxon.gbif_id)
if taxon_identifier:
taxon_identifier.iucn_data = taxon.iucn_data
taxon_identifier.iucn_redlist_id = taxon.iucn_redlist_id
taxon_identifier.author = taxon.author
taxon_identifier.endemism = taxon.endemism
taxon_identifier.save()
if taxon.iucn_status:
iucn_status = IUCNStatus.objects.get(
pk=taxon.iucn_status.pk)
taxonomy = Taxonomy.objects.get(id=taxon_identifier.id)
taxonomy.iucn_status = iucn_status
taxonomy.save()
collections = BiologicalCollectionRecord.objects.filter(
taxonomy__isnull=True,
)
for collection in collections:
update_collection_record(collection)
models.signals.post_save.connect(
collection_post_save_handler,
)
def test_get_children(self):
taxon_identifier = process_taxon_identifier(self.gbif_key)
parent = taxon_identifier.parent
self.assertTrue(len(parent.get_direct_children()) > 0)
def test_process_taxon(self):
taxon_identifier = process_taxon_identifier(self.gbif_key, False)
scientific_name = 'Elasmobranchii'
self.assertEqual(scientific_name, taxon_identifier.scientific_name)
