def __load_collection_json(bioc_json: str, is_file: bool = True):
"""load a json bioc collection .
It will return a bioc collection object.
:param bioc_json: a str path to a bioc file or a bioc input json string
:param is_file: if True bioc_input is a path else it is a string
:returns: a bioc collection object
"""
if is_file:
with open(bioc_json, 'r') as fp:
collection = biocjson.load(fp)
return (collection)
else:
collection = biocjson.loads(bioc_json)
return (collection)
def test_loads():
with open(file, encoding='utf8') as fp:
s = fp.read()
collection = biocjson.loads(s)
assert_everything(collection)
def test_dumps():
with open(file, encoding='utf8') as fp:
collection = biocjson.load(fp)
s = biocjson.dumps(collection)
collection = biocjson.loads(s)
assert_everything(collection)