def test__get_field_names(self):
from biocrnpyler import Parameter
with self.assertRaises(AssertionError):
Parameter._get_field_names(field_names=None,
accepted_field_names=None)
with self.assertRaises(AssertionError):
Parameter._get_field_names(field_names={}, accepted_field_names={})
accepted_field_names = {
'mechanism': ['mechanism', 'mechanism_id'],
'param_name':
["parameter_name", "parameter", "param", "param_name"],
'part_id': ['part_id', 'part'],
'param_val': ["val", "value", "param_val", "parameter_value"]
}
ret_dict = Parameter._get_field_names(
field_names=[''], accepted_field_names=accepted_field_names)
self.assertEqual(accepted_field_names.keys(), ret_dict.keys())
field_names = ['part_id']
with self.assertWarns(Warning):
Parameter._get_field_names(field_names, accepted_field_names)
accepted_field_names = {
'dummy': ['dumb', 'dumber'],
}
with self.assertWarns(Warning):
Parameter._get_field_names(field_names, accepted_field_names)
def test__get_field_names(self):
test_accepted_field_names = {
'mechanism': ['mechanism', 'mechanism_id']
}
valid_field_names = ['part_id']
# test None as field_names
with self.assertRaisesRegexp(ValueError,
'field_names must be a list of strings'):
Parameter._get_field_names(
field_names=None,
accepted_field_names=test_accepted_field_names)
# test invalid field_names type
with self.assertRaisesRegexp(ValueError,
'field_names must be a list of strings'):
Parameter._get_field_names(
field_names={}, accepted_field_names=test_accepted_field_names)
# test empty field_names list
with self.assertRaisesRegexp(ValueError,
'field_names cannot be empty list!'):
Parameter._get_field_names(
field_names=[], accepted_field_names=test_accepted_field_names)
# test None as accepted_field_names
with self.assertRaisesRegexp(
ValueError, 'accepted_field_names must be a dictionary'):
Parameter._get_field_names(field_names=valid_field_names,
accepted_field_names=None)
# test invalid accepted_field_names type
with self.assertRaisesRegexp(
ValueError, 'accepted_field_names must be a dictionary'):
Parameter._get_field_names(field_names=valid_field_names,
accepted_field_names=[])
# test empty field_names list
with self.assertRaisesRegexp(
ValueError, 'accepted_field_names cannot be empty dictionary'):
Parameter._get_field_names(field_names=valid_field_names,
accepted_field_names={})
accepted_field_names = {
'mechanism': ['mechanism', 'mechanism_id'],
'param_name':
["parameter_name", "parameter", "param", "param_name"],
'part_id': ['part_id', 'part'],
'param_val': ["val", "value", "param_val", "parameter_value"]
}
ret_dict = Parameter._get_field_names(
field_names=[''], accepted_field_names=accepted_field_names)
self.assertEqual(accepted_field_names.keys(), ret_dict.keys())
with self.assertWarns(Warning):
Parameter._get_field_names(valid_field_names, accepted_field_names)
accepted_field_names = {
'dummy': ['dumb', 'dumber'],
}
with self.assertWarns(Warning):
Parameter._get_field_names(valid_field_names, accepted_field_names)