def setUp(self):
self.xml_file = os.path.abspath(
os.path.join('tests', 'test_processes_local', 'helloworld.xml'))
self.tst_out_file = os.path.abspath(
os.path.join('tests', 'test_processes_local', 'helloworld.txt'))
ConfigAccess(
os.path.abspath(
os.path.join('tests', 'test_config', 'config_local.json')))
runner_name = sys.argv[2]
runner_name = runner_name.upper()
# create the config file from config_sample.json
bioimagepy_dir = os.path.join(os.path.dirname(os.path.realpath(__file__)))
package_dir = Path(bioimagepy_dir).parent
config_json = read_json(os.path.join(bioimagepy_dir, 'config_sample.json'))
config_json["process"]["xml_dirs"] = [ os.path.join(package_dir,
"toolboxes", "tools")]
config_json["process"]["categories"] = os.path.join(package_dir,
"toolboxes",
"toolboxes.json")
config_json["process"]["tools"] = os.path.join(package_dir, "toolboxes",
"tools.json")
config_json["runner"]["service"] = runner_name
if runner_name == 'DOCKER':
config_json["runner"]["working_dir"] = os.path.join(package_dir, "userdata")
config_json["gui"] = {"tmp": os.path.join(package_dir, "userdata")}
config_json["user"]["name"] = user_name
config_json["formats"]["file"] = os.path.join(package_dir, "formats.json")
config_file = os.path.join(package_dir, 'config.json')
write_json(config_json, config_file)
# run toolboxes build
ConfigAccess(config_file)
builder = Toolboxes()
builder.build()
def test_access(self):
ConfigAccess(self.config_local_file)
content = ConfigAccess.instance().config
self.assertTrue(_check_content(content))
def setUp(self):
self.xml_file = os.path.join('tests', 'test_processes_local', 'svdeconv', 'svdeconv2d.xml')
ConfigAccess(os.path.join('tests', 'test_config','config_local.json'))