def probematch_async(handle_files, cmdoptions):
service = RDPTools()
try:
jobid = service.probematch_submit(handle_files[0], cmdoptions, handle_files[1])
except urllib2.URLError:
raise SystemExit("Failed to connect to KBase server")
except subprocess.CalledProcessError, args:
raise SystemExit("Failed to execute command: " + " ".join(args))
def classifier_async(handle_files, cmdoptions):
service = RDPTools()
try:
jobid = service.classify_submit(handle_files, cmdoptions)
except urllib2.URLError:
raise SystemExit("Failed to connect to KBase server")
except RuntimeError:
raise SystemExit("Failed to upload job to AWE")
print "Got jobID", jobid
while True:
status, detail_handle, hier_handle = service.classify_check(jobid)
print "status =", status
if status == "completed":
return detail_handle, hier_handle
elif status == "suspend":
print "Failed to execute job"
return None, None
time.sleep(1)
def seqmatch_async(handle_files, cmdoptions):
service = RDPTools()
try:
jobid = service.seqmatch_submit(
handle_files[0], handle_files[1], cmdoptions)
except urllib2.URLError:
raise SystemExit("Failed to connect to KBase server")
except RuntimeError:
raise SystemExit("Failed to upload job to AWE server")
print "Got jobID", jobid
while True:
status, result_handle = service.seqmatch_check(jobid)
print "status =", status
if status == "completed":
return result_handle
elif status == "suspend":
print "Failed to execute job"
return None
time.sleep(1)
def probematch_sync(handle_files, cmdoptions):
service = RDPTools()
return service.probematch(handle_files[0], cmdoptions, handle_files[1])
def classifier_sync(handle_files, cmdoptions):
service = RDPTools()
return service.classify(handle_files, cmdoptions)
def seqmatch_sync(handle_files, cmdoptions):
service = RDPTools()
return service.seqmatch(handle_files[0], handle_files[1], cmdoptions)