def getZip(self, pzip):
try:
path_zip = archives_path() + "/" + pzip
extension = "zip"
filename = pzip.split("/")[1]
file_size = os.path.getsize(path_zip)
if dico_mimetypes.has_key(extension):
response.content_type = dico_mimetypes[extension]
else:
response.content_type = 'text/plain'
response.headers['X-Sendfile'] = path_zip
response.headers['Content-Disposition'] = 'attachement; filename=%s' % (filename)
response.content_length = '%s' % (file_size)
return None
except:
flash("Impossible to download the zip", "error")
print_traceback()
raise abort(403)
def getZip(self, pzip):
try:
path_zip = archives_path() + "/" + pzip
extension = "zip"
filename = pzip.split("/")[1]
file_size = os.path.getsize(path_zip)
if dico_mimetypes.has_key(extension):
response.content_type = dico_mimetypes[extension]
else:
response.content_type = 'text/plain'
response.headers['X-Sendfile'] = path_zip
response.headers[
'Content-Disposition'] = 'attachement; filename=%s' % (
filename)
response.content_length = '%s' % (file_size)
return None
except:
flash("Impossible to download the zip", "error")
print_traceback()
raise abort(403)
def public_link(self, sha1, *args, **kw):
#get the measurements selected id
m_id = kw.get('m_id', None)
f = DBSession.query(Files_up).filter(Files_up.sha1 == sha1).first()
#if used with BAM_visualisation
if f is None:
try:
tmp = sha1.split('.')
sha1 = tmp[0]
if len(tmp) == 2:
f = DBSession.query(Files_up).filter(Files_up.sha1 == sha1).first()
elif len(tmp) == 3:
f_bam = DBSession.query(Files_up).filter(Files_up.sha1 == sha1).first()
fullname = f_bam.filename
name_tmp = fullname.split('.')
name = name_tmp[0]
f = DBSession.query(Files_up).filter(Files_up.filename == name + ".bam.bai").first()
if f is None:
flash("Sorry, your URL seems to be wrong. File corresponding to sha1 : " + str(sha1) + " and m_id : " + str(m_id) + " does not exist.", "error")
raise abort(403)
except:
flash("Sorry, this file is not referenced into BioRepo.", "error")
raise abort(403)
list_meas = f.measurements
for m in list_meas:
if len(list_meas) == 1:
if m.status_type:
path_fu = f.path + "/" + f.sha1
extension = f.extension
filename = f.filename
file_size = os.path.getsize(path_fu)
if dico_mimetypes.has_key(extension):
response.content_type = dico_mimetypes[extension]
else:
response.content_type = 'text/plain'
response.headers['X-Sendfile'] = path_fu
response.headers['Content-Disposition'] = 'attachement; filename=%s' % (filename)
response.content_length = '%s' % (file_size)
return None
else:
flash("Sorry, this file is not allowed to be extracted out of BioRepo.", "error")
raise abort(403)
#/!\lil hack : the same file can be used by several (or same) user in public AND private, and for this case it's tested in helpers.py
else:
meas = DBSession.query(Measurements).filter(Measurements.id == m_id).first()
list_fus = meas.fus
if len(list_fus) == 1 and meas.status_type:
for other_f in list_fus:
sha1 = other_f.sha1
path_fu = other_f.path + "/" + sha1
extension = other_f.extension
filename = other_f.filename
file_size = os.path.getsize(path_fu)
if dico_mimetypes.has_key(extension):
response.content_type = dico_mimetypes[extension]
else:
response.content_type = 'text/plain'
response.headers['X-Sendfile'] = path_fu
response.headers['Content-Disposition'] = 'attachement; filename=%s' % (filename)
response.content_length = '%s' % (file_size)
return None
elif not meas.status_type:
flash("Sorry, this file is not allowed to be extracted out of BioRepo.", "error")
raise abort(403)
else:
flash("Problem with the attached file", "error")
raise abort(403)
def public_link(self, sha1, *args, **kw):
#get the measurements selected id
m_id = kw.get('m_id', None)
f = DBSession.query(Files_up).filter(Files_up.sha1 == sha1).first()
#if used with BAM_visualisation
if f is None:
try:
tmp = sha1.split('.')
sha1 = tmp[0]
if len(tmp) == 2:
f = DBSession.query(Files_up).filter(
Files_up.sha1 == sha1).first()
elif len(tmp) == 3:
f_bam = DBSession.query(Files_up).filter(
Files_up.sha1 == sha1).first()
fullname = f_bam.filename
name_tmp = fullname.split('.')
name = name_tmp[0]
f = DBSession.query(Files_up).filter(
Files_up.filename == name + ".bam.bai").first()
if f is None:
flash(
"Sorry, your URL seems to be wrong. File corresponding to sha1 : "
+ str(sha1) + " and m_id : " + str(m_id) +
" does not exist.", "error")
raise abort(403)
except:
flash("Sorry, this file is not referenced into BioRepo.",
"error")
raise abort(403)
list_meas = f.measurements
for m in list_meas:
if len(list_meas) == 1:
if m.status_type:
path_fu = f.path + "/" + f.sha1
extension = f.extension
filename = f.filename
file_size = os.path.getsize(path_fu)
if dico_mimetypes.has_key(extension):
response.content_type = dico_mimetypes[extension]
else:
response.content_type = 'text/plain'
response.headers['X-Sendfile'] = path_fu
response.headers[
'Content-Disposition'] = 'attachement; filename=%s' % (
filename)
response.content_length = '%s' % (file_size)
return None
else:
flash(
"Sorry, this file is not allowed to be extracted out of BioRepo.",
"error")
raise abort(403)
#/!\lil hack : the same file can be used by several (or same) user in public AND private, and for this case it's tested in helpers.py
else:
meas = DBSession.query(Measurements).filter(
Measurements.id == m_id).first()
list_fus = meas.fus
if len(list_fus) == 1 and meas.status_type:
for other_f in list_fus:
sha1 = other_f.sha1
path_fu = other_f.path + "/" + sha1
extension = other_f.extension
filename = other_f.filename
file_size = os.path.getsize(path_fu)
if dico_mimetypes.has_key(extension):
response.content_type = dico_mimetypes[extension]
else:
response.content_type = 'text/plain'
response.headers['X-Sendfile'] = path_fu
response.headers[
'Content-Disposition'] = 'attachement; filename=%s' % (
filename)
response.content_length = '%s' % (file_size)
return None
elif not meas.status_type:
flash(
"Sorry, this file is not allowed to be extracted out of BioRepo.",
"error")
raise abort(403)
else:
flash("Problem with the attached file", "error")
raise abort(403)
