def test_fasta():
fasta = FASTA()
fasta.load_fasta(None)
fasta.load_fasta("P43403")
fasta.load_fasta("P43403") # already there
fasta.header
fasta.gene_name
fasta.sequence
fasta.fasta
fasta.identifier
fh = tempfile.NamedTemporaryFile(delete=False)
fasta.save_fasta(fh.name)
fasta.read_fasta(fh.name)
fh.delete = True
fh.close()
def read_fasta(file_name):
'''
:param file_name:
:return: the fasta raw data
'''
f = FASTA.read_fasta(file_name)
return f._fasta
